Rorug04G0288700
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010335
Physical Location & Seq
Forward (+)
46180510 .. 46181318
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0288700.1

Sequence Viewer

Length: 594 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

197

Amino Acids

21.61

Weight (kDa)

5.35

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 6.2e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 1 cut(s) 528
AclI AACGTT 1 cut(s) 549
AclWI GGATC 3 cut(s) 141, 327, 340
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 1 cut(s) 91
AfeI AGCGCT 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 1 cut(s) 425
AhlI ACTAGT 2 cut(s) 314, 359
AjnI CCWGG 2 cut(s) 92, 414
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 562, 584
AluI AGCT 4 cut(s) 53, 199, 562, 584
Alw21I GWGCWC 2 cut(s) 450, 564
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 3 cut(s) 141, 327, 340
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 578
Aor51HI AGCGCT 1 cut(s) 499
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 50, 293, 584
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 3 cut(s) 164, 306, 450
BamHI GGATCC 1 cut(s) 332
BanII GRGCYC 2 cut(s) 262, 564
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 450, 564
BbvI GCAGC 3 cut(s) 62, 280, 571
BccI CCATC 2 cut(s) 368, 583
BceAI ACGGC 2 cut(s) 72, 466
BciT130I CCWGG 2 cut(s) 94, 416
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 359
BfaI CTAG 3 cut(s) 315, 360, 592
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 501
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 585
BlpI GCTNAGC 1 cut(s) 563
BlsI GCNGC 3 cut(s) 52, 295, 586
Bme1390I CCNGG 2 cut(s) 94, 416
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 4 cut(s) 6, 245, 334, 355
BmrFI CCNGG 2 cut(s) 94, 416
BpmI CTGGAG 3 cut(s) 93, 179, 282
Bpu10I CCTNAGC 1 cut(s) 523
Bpu1102I GCTNAGC 1 cut(s) 563
BpuEI CTTGAG 2 cut(s) 113, 578
BsaHI GRCGYC 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 1 cut(s) 449
Bse1I ACTGG 2 cut(s) 205, 299
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 94, 416
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 2 cut(s) 386, 575
BseLI CCNNNNNNNGG 1 cut(s) 449
BseMII CTCAG 2 cut(s) 537, 577
BseNI ACTGG 2 cut(s) 205, 299
BseRI GAGGAG 3 cut(s) 44, 417, 420
BseSI GKGCMC 3 cut(s) 164, 306, 450
BseXI GCAGC 3 cut(s) 62, 280, 571
BsiHKAI GWGCWC 2 cut(s) 450, 564
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 262, 306, 450, 564
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 4 cut(s) 133, 186, 332, 409
Bsp1720I GCTNAGC 1 cut(s) 563
BspACI CCGC 1 cut(s) 528
BspCNI CTCAG 2 cut(s) 536, 576
BspEI TCCGGA 1 cut(s) 578
BspLI GGNNCC 4 cut(s) 6, 245, 334, 355
BspPI GGATC 3 cut(s) 141, 327, 340
BsrI ACTGG 2 cut(s) 205, 299
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 4 cut(s) 133, 186, 332, 409
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 416
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 1 cut(s) 435
BstACI GRCGYC 1 cut(s) 459
BstDEI CTNAG 2 cut(s) 523, 563
BstEII GGTNACC 2 cut(s) 467, 530
BstF5I GGATG 2 cut(s) 386, 575
BstH2I RGCGCY 1 cut(s) 501
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 4 cut(s) 136, 189, 335, 412
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 133, 186, 332, 409
BstNI CCWGG 2 cut(s) 94, 416
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 2 cut(s) 467, 530
BstSCI CCNGG 2 cut(s) 92, 414
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 450
BstV1I GCAGC 3 cut(s) 62, 280, 571
BstX2I RGATCY 3 cut(s) 133, 186, 332
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 3 cut(s) 133, 186, 332
BtsCI GGATG 2 cut(s) 386, 575
BtsIMutI CAGTG 2 cut(s) 306, 544
CfoI GCGC 1 cut(s) 500
Cfr13I GGNCC 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 523, 563
DpnI GATC 4 cut(s) 135, 188, 334, 411
DpnII GATC 4 cut(s) 133, 186, 332, 409
Eam1104I CTCTTC 1 cut(s) 435
EarI CTCTTC 1 cut(s) 435
Ecl136II GAGCTC 1 cut(s) 562
Eco24I GRGCYC 2 cut(s) 262, 564
Eco47I GGWCC 1 cut(s) 354
Eco47III AGCGCT 1 cut(s) 499
Eco53kI GAGCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 467, 530
EcoICRI GAGCTC 1 cut(s) 562
EcoO65I GGTNACC 2 cut(s) 467, 530
EcoRII CCWGG 2 cut(s) 92, 414
EcoT38I GRGCYC 2 cut(s) 262, 564
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 5 cut(s) 71, 144, 210, 216, 308
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 585
FokI GGATG 2 cut(s) 373, 562
FriOI GRGCYC 2 cut(s) 262, 564
Fsp4HI GCNGC 3 cut(s) 51, 294, 585
FspBI CTAG 3 cut(s) 315, 360, 592
GlaI GCGC 1 cut(s) 499
GluI GCNGC 3 cut(s) 51, 294, 585
GsuI CTGGAG 3 cut(s) 93, 179, 282
HaeII RGCGCY 1 cut(s) 501
HapII CCGG 1 cut(s) 579
HhaI GCGC 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 579
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 2 cut(s) 357, 448
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 557, 579
Hpy8I GTNNAC 2 cut(s) 357, 448
HpyAV CCTTC 2 cut(s) 469, 485
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 3 cut(s) 252, 459, 549
HpyCH4V TGCA 2 cut(s) 394, 448
HpyF3I CTNAG 2 cut(s) 523, 563
HpySE526I ACGT 3 cut(s) 252, 459, 549
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 498
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 4 cut(s) 133, 186, 332, 409
LmnI GCTCC 2 cut(s) 301, 581
Lsp1109I GCAGC 3 cut(s) 62, 280, 571
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 360, 592
MaeII ACGT 3 cut(s) 252, 459, 549
MaeIII GTNAC 3 cut(s) 467, 506, 530
MalI GATC 4 cut(s) 135, 188, 334, 411
MboI GATC 4 cut(s) 133, 186, 332, 409
MboII GAAGA 1 cut(s) 422
MflI RGATCY 3 cut(s) 133, 186, 332
MhlI GDGCHC 5 cut(s) 164, 262, 306, 450, 564
MluCI AATT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 578
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 2 cut(s) 94, 416
MvaI CCWGG 2 cut(s) 94, 416
NdeII GATC 4 cut(s) 133, 186, 332, 409
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 4 cut(s) 6, 245, 334, 355
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 586
Psp124BI GAGCTC 1 cut(s) 564
Psp1406I AACGTT 1 cut(s) 549
Psp6I CCWGG 2 cut(s) 92, 414
PspEI GGTNACC 2 cut(s) 467, 530
PspGI CCWGG 2 cut(s) 92, 414
PspN4I GGNNCC 4 cut(s) 6, 245, 334, 355
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 3 cut(s) 133, 186, 332
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 564
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 585
Sau3AI GATC 4 cut(s) 133, 186, 332, 409
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 416
SduI GDGCHC 5 cut(s) 164, 262, 306, 450, 564
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 557
SmoI CTYRAG 3 cut(s) 128, 261, 557
SpeI ACTAGT 2 cut(s) 314, 359
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 528
SspMI CTAG 3 cut(s) 315, 360, 592
SstI GAGCTC 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 92, 414
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 3 cut(s) 255, 462, 552
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 346
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 306, 544
TseI GCWGC 3 cut(s) 50, 293, 584
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 306, 544
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 1 cut(s) 354
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 315, 360, 592
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.