Rroxscaffold_5G00376910
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010335
Physical Location & Seq
Reverse (-)
57481974 .. 57484322
2349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00376910.1

Sequence Viewer

Length: 1152 bp
ATGCAGGGTTCAAAAATGAGTTTGTATGTGAAAGCCTTGGAGGAAGAGAGGCAAAAGATTCAAGTTTTCCAAAGAGAGCTGCCTCTCTGCTTGGAGCTTGTCACTCAAGCTATTGAGAGGTGTAAGCAGGAGCTGTCGGATAATAGCATAGAGTACAGGCATGGGCAATCCGAGTGTTCGGAGCAGACTTCAAGTGAGGGACATGTGTTTGAGGAGTTTATACCATTGAAAAGGAGTTCATGTTATGATAGTGATAATGATGAGGAGCTAGAAGAGTCTGATCATCAGCAGATTAAGATTGATGACAAGGATAAGAGTAACAGTGGTGACAAGAAGAAATCAGACTGGCTTAGATCTGTTCAGCTTTGGAATACAACCCCAGATTTACCCCAGAAAGAGGAATTGCCTAGAAAGGCTTTAGTGGTGGAGGTTAAGAGAAATGGGGGTGCTTTTCAGCCTTTCCAAAGGGAGAAAGGCATTGGGAAGACTAATGGGGCAGTGGCGAAGTCGCCTGCTTCGGCTCCGGCCACTAGCTCAACCGCTGACACCGTCAGCGGTGGCAGCGGCGGTGGAAACAGCAAGAAGGAAGATAAGGAGGGGCAGAGGAAACAGAGGCGGAACTGGTCGCCGGAGTTGCATCGCCGGTTCTTGCATGCCCTTCAACAGCTTGGTGGCTCGCACACTGCTACACCTAAGCAAATTAGAGAGCTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTCTACACACTCGAAGGCCAACTCCAACAATCCATAACAACAACAACAACAGCAATGCACAAGCACCACAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCCCAAGACTACAATGCAGCAATCGCAGCTGCAAACACAGCTCCAGGCGAAGCAGCCAGGGTTGCTGTTGCAGCCAATGGAATATATGCACCAGTGGCTTCAACACCTTCTACTGTCACACAGGTGTCACCATCAGCAATGCATAGACTGCGACCAAAGAAACCAGAGCCCCCTTCTCATTCGGAAGAAAGAGCCAGCCATAGCGGTGAAGGTCGCGGTCACTCCAACTCCACGGCTACATCACCCTCCTCCACTCACACCCCTGCCTCCCCTCCTGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

383

Amino Acids

42.06

Weight (kDa)

8.47

Isoelectric Point (pI)

61.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 4 - 45 5.8e-15 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 205 - 256 2.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 862
AccI GTMKAC 1 cut(s) 769
AccII CGCG 1 cut(s) 1083
AciI CCGC 7 cut(s) 540, 555, 564, 567, 616, 1071, 1083
AcoI YGGCCR 1 cut(s) 525
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 397
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 6 cut(s) 12, 62, 192, 229, 662, 969
AjnI CCWGG 2 cut(s) 910, 923
AleI CACNNNNGTG 1 cut(s) 989
AlwNI CAGNNNCTG 1 cut(s) 133
AoxI GGCC 2 cut(s) 525, 782
ApeKI GCWGC 7 cut(s) 79, 561, 884, 893, 896, 920, 938
AsuHPI GGTGA 4 cut(s) 338, 987, 1085, 1101
BanI GGYRCC 1 cut(s) 862
BanII GRGCYC 1 cut(s) 1038
BbsI GAAGAC 1 cut(s) 491
BbvI GCAGC 7 cut(s) 66, 573, 883, 896, 905, 932, 950
BccI CCATC 2 cut(s) 716, 1006
BceAI ACGGC 1 cut(s) 1116
BciT130I CCWGG 2 cut(s) 912, 925
BclI TGATCA 1 cut(s) 280
BfaI CTAG 3 cut(s) 269, 408, 531
BglII AGATCT 1 cut(s) 353
BisI GCNGC 8 cut(s) 80, 562, 565, 885, 894, 897, 921, 939
BlsI GCNGC 8 cut(s) 81, 563, 566, 886, 895, 898, 922, 940
Bme1390I CCNGG 2 cut(s) 912, 925
BmiI GGNNCC 2 cut(s) 522, 864
BmrFI CCNGG 2 cut(s) 912, 925
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 491
BpmI CTGGAG 1 cut(s) 894
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 90
BsaJI CCNNGG 3 cut(s) 36, 924, 1098
BsaXI ACNNNNNCTCC 4 cut(s) 226, 256, 1079, 1109
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse118I RCCGGY 1 cut(s) 642
Bse1I ACTGG 3 cut(s) 350, 626, 959
Bse3DI GCAATG 2 cut(s) 826, 1011
BseBI CCWGG 2 cut(s) 912, 925
BseDI CCNNGG 3 cut(s) 36, 924, 1098
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 2 cut(s) 826, 1011
BseNI ACTGG 3 cut(s) 350, 626, 959
BseRI GAGGAG 3 cut(s) 227, 278, 1105
BseXI GCAGC 7 cut(s) 66, 573, 883, 896, 905, 932, 950
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 2 cut(s) 527, 784
BshNI GGYRCC 1 cut(s) 862
BsiSI CCGG 3 cut(s) 524, 629, 643
BslFI GGGAC 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 213
BsnI GGCC 2 cut(s) 527, 784
Bsp1286I GDGCHC 1 cut(s) 1038
Bsp143I GATC 2 cut(s) 280, 353
BspACI CCGC 7 cut(s) 540, 555, 564, 567, 616, 1071, 1083
BspANI GGCC 2 cut(s) 527, 784
BspFNI CGCG 1 cut(s) 1083
BspLI GGNNCC 2 cut(s) 522, 864
BspT107I GGYRCC 1 cut(s) 862
BsrDI GCAATG 2 cut(s) 826, 1011
BsrFI RCCGGY 1 cut(s) 642
BsrI ACTGG 3 cut(s) 350, 626, 959
BssAI RCCGGY 1 cut(s) 642
BssECI CCNNGG 3 cut(s) 36, 924, 1098
BssMI GATC 2 cut(s) 280, 353
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 912, 925
Bst4CI ACNGT 3 cut(s) 323, 550, 982
Bst6I CTCTTC 2 cut(s) 39, 267
BstAPI GCANNNNNTGC 1 cut(s) 1015
BstC8I GCNNGC 4 cut(s) 513, 654, 677, 1063
BstDEI CTNAG 2 cut(s) 350, 693
BstDSI CCRYGG 1 cut(s) 1098
BstFNI CGCG 1 cut(s) 1083
BstKTI GATC 2 cut(s) 283, 356
BstMBI GATC 2 cut(s) 280, 353
BstMWI GCNNNNNNNGC 9 cut(s) 561, 634, 890, 893, 905, 929, 938, 962, 1015
BstNI CCWGG 2 cut(s) 912, 925
BstNSI RCATGY 2 cut(s) 206, 656
BstSCI CCNGG 2 cut(s) 910, 923
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 7 cut(s) 66, 573, 883, 896, 905, 932, 950
BstV2I GAAGAC 1 cut(s) 491
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuRI GGCC 2 cut(s) 527, 784
BtgI CCRYGG 1 cut(s) 1098
BtgZI GCGATG 1 cut(s) 623
BtsI GCAGTG 2 cut(s) 504, 681
BtsIMutI CAGTG 4 cut(s) 328, 504, 681, 966
Cac8I GCNNGC 4 cut(s) 513, 654, 677, 1063
CaiI CAGNNNCTG 1 cut(s) 133
Cfr10I RCCGGY 1 cut(s) 642
Csp6I GTAC 1 cut(s) 154
CviAII CATG 4 cut(s) 161, 203, 240, 653
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 2 cut(s) 350, 693
DpnI GATC 2 cut(s) 282, 355
DpnII GATC 2 cut(s) 280, 353
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 39, 267
EarI CTCTTC 2 cut(s) 39, 267
EciI GGCGGA 1 cut(s) 631
Eco130I CCWWGG 1 cut(s) 36
Eco24I GRGCYC 1 cut(s) 1038
EcoRII CCWGG 2 cut(s) 910, 923
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 1011
EcoT38I GRGCYC 1 cut(s) 1038
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 4 cut(s) 164, 206, 243, 656
FaqI GGGAC 1 cut(s) 213
FatI CATG 4 cut(s) 160, 202, 239, 652
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 8 cut(s) 80, 562, 565, 885, 894, 897, 921, 939
FriOI GRGCYC 1 cut(s) 1038
Fsp4HI GCNGC 8 cut(s) 80, 562, 565, 885, 894, 897, 921, 939
FspBI CTAG 3 cut(s) 269, 408, 531
GluI GCNGC 8 cut(s) 80, 562, 565, 885, 894, 897, 921, 939
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 2 cut(s) 527, 784
HapII CCGG 3 cut(s) 524, 629, 643
Hin1II CATG 4 cut(s) 164, 206, 243, 656
HinfI GANTC 2 cut(s) 58, 275
HpaII CCGG 3 cut(s) 524, 629, 643
HphI GGTGA 4 cut(s) 338, 987, 1085, 1101
Hpy166II GTNNAC 1 cut(s) 770
Hpy188I TCNGA 6 cut(s) 139, 172, 181, 280, 343, 1051
Hpy8I GTNNAC 1 cut(s) 770
HpyAV CCTTC 7 cut(s) 577, 668, 709, 774, 984, 1050, 1070
HpyCH4III ACNGT 3 cut(s) 323, 550, 982
HpyCH4V TGCA 9 cut(s) 4, 637, 652, 824, 884, 899, 938, 956, 1009
HpyF10VI GCNNNNNNNGC 9 cut(s) 561, 634, 890, 893, 905, 929, 938, 962, 1015
HpyF3I CTNAG 2 cut(s) 350, 693
Hsp92II CATG 4 cut(s) 164, 206, 243, 656
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 280, 353
LmnI GCTCC 6 cut(s) 94, 130, 181, 265, 526, 913
Lsp1109I GCAGC 7 cut(s) 66, 573, 883, 896, 905, 932, 950
LweI GCATC 1 cut(s) 646
MaeI CTAG 3 cut(s) 269, 408, 531
MaeIII GTNAC 6 cut(s) 100, 317, 326, 982, 993, 1085
MalI GATC 2 cut(s) 282, 355
MboI GATC 2 cut(s) 280, 353
MboII GAAGA 6 cut(s) 56, 284, 346, 496, 599, 1064
MflI RGATCY 1 cut(s) 353
MhlI GDGCHC 1 cut(s) 1038
MluCI AATT 3 cut(s) 401, 699, 836
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 3 cut(s) 117, 815, 1116
Mph1103I ATGCAT 1 cut(s) 1011
MseI TTAA 3 cut(s) 294, 432, 1150
MslI CAYNNNNRTG 3 cut(s) 860, 989, 1071
MspA1I CMGCKG 4 cut(s) 542, 555, 564, 896
MspI CCGG 3 cut(s) 524, 629, 643
MspR9I CCNGG 2 cut(s) 912, 925
MvaI CCWGG 2 cut(s) 912, 925
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 9 cut(s) 561, 634, 890, 893, 905, 929, 938, 962, 1015
NdeII GATC 2 cut(s) 280, 353
NlaIII CATG 4 cut(s) 164, 206, 243, 656
NlaIV GGNNCC 2 cut(s) 522, 864
NmuCI GTSAC 5 cut(s) 100, 326, 982, 993, 1085
NsiI ATGCAT 1 cut(s) 1011
NspI RCATGY 2 cut(s) 206, 656
OliI CACNNNNGTG 1 cut(s) 989
PaeI GCATGC 1 cut(s) 656
PciI ACATGT 1 cut(s) 202
PfeI GAWTC 1 cut(s) 58
PflFI GACNNNGTC 1 cut(s) 548
PkrI GCNGC 8 cut(s) 81, 563, 566, 886, 895, 898, 922, 940
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PscI ACATGT 1 cut(s) 202
Psp6I CCWGG 2 cut(s) 910, 923
PspGI CCWGG 2 cut(s) 910, 923
PspN4I GGNNCC 2 cut(s) 522, 864
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 353
PsyI GACNNNGTC 1 cut(s) 548
PvuII CAGCTG 1 cut(s) 896
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 3 cut(s) 860, 989, 1071
SaqAI TTAA 3 cut(s) 294, 432, 1150
SatI GCNGC 8 cut(s) 80, 562, 565, 885, 894, 897, 921, 939
Sau3AI GATC 2 cut(s) 280, 353
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 912, 925
SduI GDGCHC 1 cut(s) 1038
SfaNI GCATC 1 cut(s) 646
SmiMI CAYNNNNRTG 3 cut(s) 860, 989, 1071
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
SphI GCATGC 1 cut(s) 656
Sse9I AATT 3 cut(s) 401, 699, 836
SsiI CCGC 7 cut(s) 540, 555, 564, 567, 616, 1071, 1083
SspMI CTAG 3 cut(s) 269, 408, 531
StyD4I CCNGG 2 cut(s) 910, 923
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 3 cut(s) 323, 550, 982
TaqI TCGA 1 cut(s) 778
TasI AATT 3 cut(s) 401, 699, 836
TatI WGTACW 1 cut(s) 153
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 3 cut(s) 294, 432, 1150
Tru9I TTAA 3 cut(s) 294, 432, 1150
TscAI CASTG 4 cut(s) 328, 504, 688, 966
TseFI GTSAC 5 cut(s) 100, 326, 982, 993, 1085
TseI GCWGC 7 cut(s) 79, 561, 884, 893, 896, 920, 938
Tsp45I GTSAC 5 cut(s) 100, 326, 982, 993, 1085
TspDTI ATGAA 3 cut(s) 228, 728, 753
TspRI CASTG 4 cut(s) 328, 504, 688, 966
Tth111I GACNNNGTC 1 cut(s) 548
XceI RCATGY 2 cut(s) 206, 656
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 3 cut(s) 269, 408, 531
Zsp2I ATGCAT 1 cut(s) 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.