MD13G1045700.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0010335
Physical Location & Seq
Reverse (-)
3160004 .. 3162550
2547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1045700.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGAGTCCACAGAGGAAATGCAGGCTTCTTCAAAGCTAGGTTTCCGTGAGTATGTCAAGGCTTTGGAGGAGGAGAGGCATAAGATTCAAGTTTTTCAGAGAGAGCTCCCTCTCTGCTTCGAGCTTGTCACTCAAGCTATTGAGAGGTGCAAGCAGCCGGTTTCAGATACAACCGCAGATTATATGCATGGACAATCTGAGTGTTCTCAGCAGACTTCGAGTGAGGGGCATGTTTTTGAGGAATTTATTCCATTAAAAAGGACTTCATCTTCTGATAGTGAGGACGATGAAGTGCACGAGTCTCAGGAGGCTAAGGACAATGAGAAGGATGATAAGATTGCAGGAGGTGATAAGAAAAAATCAGATTGGCTTAGATCTGTACAGCTTTGGAATACAACCCCAGATGCACCACTCAAGGAGGAATTGCCTAGGAAGGCTTTGGTTATGGAGGTAAATAGAAATGGGGGTGCTTTTCAGCCTTTCCAAAAGGAGAAAAGCATTGGGAAGACTAGTGTACCGGTGGCTAAACAACCTTCCTCGGCTGCGGCGACTAGTTCTACCACGGACACCGTGAGCGGAGGCAGTGGTGAAAACAACAAGAAAGAAGAGAAAGATGGACTGGGTCAGAGGAAACAAAGGCGGAACTGGTCGCCGGAATTGCACCGCCGGTTCTTAAATGCTCTTCAACAGCTTGGTGGTTCACATGCTGCTACACCCAAACAAATTAGAGAGTTAATGAAGGTTGATGGACTTACTAATGATGAAGTCAAAAGCCATTTGCAGAAATATCGTTTACACACTAGAAGACCGACTCCAACAATTCGCGGCAACAACAACGCCGCACAAGCACCACAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCCCAGGACTACGCAGCAGTGGCAGCAACCACTGCTTCCGGGGAGGCAGCCAATAATGGAATATATGCACCTGTGGCTTCAACTCCTGCTGTCACACAGGTCTCACCACCAGTCCAAAGACTGCGGCTAAAGCAACCCGAACCCTCTCATTCAGACGAAAGGGTCAGCCACAACGAAGGCCGCGGTCACTCCAATTCGACCGCTACATCATCCTCCCCTCACACCCCTCCATCCCCTGCGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

377

Amino Acids

41.44

Weight (kDa)

6.66

Isoelectric Point (pI)

61.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 15 - 52 3.8e-14 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 213 - 264 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1046
AccB1I GGYRCC 1 cut(s) 880
AccBSI CCGCTC 1 cut(s) 576
AccII CGCG 2 cut(s) 825, 1068
AcsI RAATTY 1 cut(s) 242
AfaI GTAC 2 cut(s) 381, 516
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 4 cut(s) 33, 89, 686, 966
AhlI ACTAGT 2 cut(s) 509, 551
AjnI CCWGG 1 cut(s) 888
AluBI AGCT 6 cut(s) 37, 106, 124, 137, 385, 691
AluI AGCT 6 cut(s) 37, 106, 124, 137, 385, 691
Alw21I GWGCWC 2 cut(s) 108, 297
Alw26I GTCTC 2 cut(s) 306, 991
Alw44I GTGCAC 1 cut(s) 293
AoxI GGCC 1 cut(s) 1063
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 6 cut(s) 154, 542, 707, 899, 908, 932
ApoI RAATTY 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 517
Asp700I GAANNNNTTC 1 cut(s) 246
AspA2I CCTAGG 1 cut(s) 428
AsuC2I CCSGG 1 cut(s) 925
AsuHPI GGTGA 3 cut(s) 359, 599, 981
AvrII CCTAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 297
BaeI ACNNNNGTAYC 2 cut(s) 498, 531
BanI GGYRCC 1 cut(s) 880
BanII GRGCYC 1 cut(s) 108
BauI CACGAG 1 cut(s) 296
BbsI GAAGAC 2 cut(s) 512, 811
Bbv12I GWGCWC 2 cut(s) 108, 297
BbvI GCAGC 6 cut(s) 166, 529, 694, 911, 920, 944
BccI CCATC 3 cut(s) 608, 740, 1123
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 1 cut(s) 890
BcnI CCSGG 1 cut(s) 925
BcoDI GTCTC 2 cut(s) 306, 991
BcuI ACTAGT 2 cut(s) 509, 551
BfaI CTAG 5 cut(s) 38, 429, 510, 552, 801
BglII AGATCT 1 cut(s) 374
BlnI CCTAGG 1 cut(s) 428
Bme1390I CCNGG 2 cut(s) 890, 925
BmiI GGNNCC 1 cut(s) 882
BmrFI CCNGG 2 cut(s) 890, 925
BmrI ACTGGG 1 cut(s) 629
BmsI GCATC 1 cut(s) 394
BmuI ACTGGG 1 cut(s) 629
BpiI GAAGAC 2 cut(s) 512, 811
Bpu10I CCTNAGC 1 cut(s) 312
BpuEI CTTGAG 2 cut(s) 117, 398
BpuMI CCSGG 1 cut(s) 925
BsaI GGTCTC 1 cut(s) 991
BsaJI CCNNGG 6 cut(s) 428, 537, 561, 888, 924, 1066
BsaWI WCCGGW 1 cut(s) 517
Bse118I RCCGGY 3 cut(s) 157, 517, 666
Bse1I ACTGG 3 cut(s) 624, 650, 995
BseBI CCWGG 1 cut(s) 890
BseDI CCNNGG 6 cut(s) 428, 537, 561, 888, 924, 1066
BseGI GGATG 3 cut(s) 334, 1094, 1115
BseMII CTCAG 3 cut(s) 189, 221, 317
BseNI ACTGG 3 cut(s) 624, 650, 995
BseRI GAGGAG 2 cut(s) 83, 86
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 6 cut(s) 166, 529, 694, 911, 920, 944
Bsh1236I CGCG 2 cut(s) 825, 1068
Bsh1285I CGRYCG 1 cut(s) 1086
BshFI GGCC 1 cut(s) 1065
BshNI GGYRCC 1 cut(s) 880
BshTI ACCGGT 1 cut(s) 517
BsiEI CGRYCG 1 cut(s) 1086
BsiHKAI GWGCWC 2 cut(s) 108, 297
BsiSI CCGG 5 cut(s) 158, 518, 653, 667, 924
BsmAI GTCTC 2 cut(s) 306, 991
BsnI GGCC 1 cut(s) 1065
Bso31I GGTCTC 1 cut(s) 991
Bsp1286I GDGCHC 2 cut(s) 108, 297
Bsp1407I TGTACA 1 cut(s) 379
Bsp143I GATC 1 cut(s) 374
BspANI GGCC 1 cut(s) 1065
BspCNI CTCAG 3 cut(s) 190, 220, 316
BspFNI CGCG 2 cut(s) 825, 1068
BspLI GGNNCC 1 cut(s) 882
BspQI GCTCTTC 1 cut(s) 687
BspT107I GGYRCC 1 cut(s) 880
BspTNI GGTCTC 1 cut(s) 991
BsrBI CCGCTC 1 cut(s) 576
BsrFI RCCGGY 3 cut(s) 157, 517, 666
BsrGI TGTACA 1 cut(s) 379
BsrI ACTGG 3 cut(s) 624, 650, 995
BssAI RCCGGY 3 cut(s) 157, 517, 666
BssECI CCNNGG 6 cut(s) 428, 537, 561, 888, 924, 1066
BssMI GATC 1 cut(s) 374
BssSI CACGAG 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 296
Bst2UI CCWGG 1 cut(s) 890
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 2 cut(s) 600, 687
BstAPI GCANNNNNTGC 1 cut(s) 917
BstAUI TGTACA 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 24, 152
BstDEI CTNAG 5 cut(s) 198, 207, 303, 312, 371
BstDSI CCRYGG 2 cut(s) 561, 1066
BstF5I GGATG 3 cut(s) 334, 1094, 1115
BstFNI CGCG 2 cut(s) 825, 1068
BstKTI GATC 1 cut(s) 377
BstMAI GTCTC 2 cut(s) 306, 991
BstMBI GATC 1 cut(s) 374
BstMCI CGRYCG 1 cut(s) 1086
BstMWI GCNNNNNNNGC 7 cut(s) 658, 845, 905, 908, 917, 959, 1015
BstNI CCWGG 1 cut(s) 890
BstNSI RCATGY 2 cut(s) 233, 707
BstSCI CCNGG 2 cut(s) 888, 923
BstSLI GKGCMC 1 cut(s) 297
BstUI CGCG 2 cut(s) 825, 1068
BstV1I GCAGC 6 cut(s) 166, 529, 694, 911, 920, 944
BstV2I GAAGAC 2 cut(s) 512, 811
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 1 cut(s) 1065
BtgI CCRYGG 2 cut(s) 561, 1066
BtsCI GGATG 3 cut(s) 334, 1094, 1115
BtsI GCAGTG 3 cut(s) 589, 909, 915
BtsIMutI CAGTG 3 cut(s) 589, 909, 915
Cac8I GCNNGC 2 cut(s) 24, 152
Cfr10I RCCGGY 3 cut(s) 157, 517, 666
Cfr42I CCGCGG 1 cut(s) 1069
Csp6I GTAC 2 cut(s) 380, 515
CspAI ACCGGT 1 cut(s) 517
CviAII CATG 3 cut(s) 188, 230, 704
CviQI GTAC 2 cut(s) 380, 515
DdeI CTNAG 5 cut(s) 198, 207, 303, 312, 371
DpnI GATC 1 cut(s) 376
DpnII GATC 1 cut(s) 374
DrdI GACNNNNNNGTC 1 cut(s) 1046
DseDI GACNNNNNNGTC 1 cut(s) 1046
Eam1104I CTCTTC 2 cut(s) 600, 687
EarI CTCTTC 2 cut(s) 600, 687
EciI GGCGGA 1 cut(s) 655
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 991
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 888
EcoT14I CCWWGG 1 cut(s) 428
EcoT22I ATGCAT 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 3 cut(s) 191, 233, 707
FatI CATG 3 cut(s) 187, 229, 703
FokI GGATG 3 cut(s) 341, 1081, 1102
FriOI GRGCYC 1 cut(s) 108
FspBI CTAG 5 cut(s) 38, 429, 510, 552, 801
HaeIII GGCC 1 cut(s) 1065
HapII CCGG 5 cut(s) 158, 518, 653, 667, 924
Hin1II CATG 3 cut(s) 191, 233, 707
HinfI GANTC 4 cut(s) 5, 85, 299, 811
HpaII CCGG 5 cut(s) 158, 518, 653, 667, 924
HphI GGTGA 3 cut(s) 359, 599, 981
Hpy166II GTNNAC 5 cut(s) 9, 295, 515, 701, 794
Hpy188I TCNGA 7 cut(s) 99, 166, 199, 274, 364, 627, 1039
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 5 cut(s) 9, 295, 515, 701, 794
HpyAV CCTTC 5 cut(s) 319, 427, 543, 733, 1055
HpyCH4III ACNGT 1 cut(s) 571
HpyCH4V TGCA 9 cut(s) 22, 150, 187, 295, 341, 407, 661, 781, 953
HpyF10VI GCNNNNNNNGC 7 cut(s) 658, 845, 905, 908, 917, 959, 1015
HpyF3I CTNAG 5 cut(s) 198, 207, 303, 312, 371
Hsp92II CATG 3 cut(s) 191, 233, 707
KspI CCGCGG 1 cut(s) 1069
Kzo9I GATC 1 cut(s) 374
LguI GCTCTTC 1 cut(s) 687
LmnI GCTCC 1 cut(s) 111
Lsp1109I GCAGC 6 cut(s) 166, 529, 694, 911, 920, 944
LweI GCATC 1 cut(s) 394
MaeI CTAG 5 cut(s) 38, 429, 510, 552, 801
MaeIII GTNAC 3 cut(s) 127, 976, 1070
MalI GATC 1 cut(s) 376
MbiI CCGCTC 1 cut(s) 576
MboI GATC 1 cut(s) 374
MboII GAAGA 6 cut(s) 21, 261, 517, 617, 674, 816
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 108, 297
MluCI AATT 7 cut(s) 242, 422, 656, 723, 819, 854, 1078
MlyI GAGTC 3 cut(s) 14, 308, 805
MmeI TCCRAC 1 cut(s) 839
Mph1103I ATGCAT 1 cut(s) 189
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 4 cut(s) 254, 674, 734, 1129
MslI CAYNNNNRTG 1 cut(s) 878
MspA1I CMGCKG 1 cut(s) 1068
MspI CCGG 5 cut(s) 158, 518, 653, 667, 924
MspR9I CCNGG 2 cut(s) 890, 925
MvaI CCWGG 1 cut(s) 890
MvnI CGCG 2 cut(s) 825, 1068
MwoI GCNNNNNNNGC 7 cut(s) 658, 845, 905, 908, 917, 959, 1015
NciI CCSGG 1 cut(s) 925
NdeII GATC 1 cut(s) 374
NlaIII CATG 3 cut(s) 191, 233, 707
NlaIV GGNNCC 1 cut(s) 882
NmeAIII GCCGAG 1 cut(s) 518
NmuCI GTSAC 3 cut(s) 127, 976, 1070
NsiI ATGCAT 1 cut(s) 189
NspI RCATGY 2 cut(s) 233, 707
PciSI GCTCTTC 1 cut(s) 687
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 621
PinAI ACCGGT 1 cut(s) 517
PleI GAGTC 3 cut(s) 13, 307, 805
PpsI GAGTC 3 cut(s) 13, 307, 805
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 888
PspGI CCWGG 1 cut(s) 888
PspN4I GGNNCC 1 cut(s) 882
PsuI RGATCY 1 cut(s) 374
PsyI GACNNNGTC 1 cut(s) 621
RsaI GTAC 2 cut(s) 381, 516
RsaNI GTAC 2 cut(s) 380, 515
RseI CAYNNNNRTG 1 cut(s) 878
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 1 cut(s) 1069
SapI GCTCTTC 1 cut(s) 687
SaqAI TTAA 4 cut(s) 254, 674, 734, 1129
Sau3AI GATC 1 cut(s) 374
SchI GAGTC 3 cut(s) 14, 308, 805
ScrFI CCNGG 2 cut(s) 890, 925
SduI GDGCHC 2 cut(s) 108, 297
SfaNI GCATC 1 cut(s) 394
Sfr303I CCGCGG 1 cut(s) 1069
SgrBI CCGCGG 1 cut(s) 1069
SmiMI CAYNNNNRTG 1 cut(s) 878
SmlI CTYRAG 2 cut(s) 132, 413
SmoI CTYRAG 2 cut(s) 132, 413
SpeI ACTAGT 2 cut(s) 509, 551
Sse9I AATT 7 cut(s) 242, 422, 656, 723, 819, 854, 1078
SspMI CTAG 5 cut(s) 38, 429, 510, 552, 801
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 888, 923
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 3 cut(s) 120, 218, 1082
TaqII GACCGA 1 cut(s) 823
TasI AATT 7 cut(s) 242, 422, 656, 723, 819, 854, 1078
TatI WGTACW 1 cut(s) 379
TauI GCSGC 5 cut(s) 548, 828, 842, 1012, 1068
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 4 cut(s) 254, 674, 734, 1129
Tru9I TTAA 4 cut(s) 254, 674, 734, 1129
TscAI CASTG 3 cut(s) 589, 909, 922
TseFI GTSAC 3 cut(s) 127, 976, 1070
TseI GCWGC 6 cut(s) 154, 542, 707, 899, 908, 932
Tsp45I GTSAC 3 cut(s) 127, 976, 1070
TspDTI ATGAA 4 cut(s) 255, 303, 752, 777
TspGWI ACGGA 2 cut(s) 35, 578
TspRI CASTG 3 cut(s) 589, 909, 922
Tth111I GACNNNGTC 1 cut(s) 621
VneI GTGCAC 1 cut(s) 293
XapI RAATTY 1 cut(s) 242
XceI RCATGY 2 cut(s) 233, 707
XmaJI CCTAGG 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 5 cut(s) 38, 429, 510, 552, 801
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.