MD16G1047300.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0010335
Physical Location & Seq
Reverse (-)
3292076 .. 3294467
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1047300.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGAGTCCACAGAGGAAATGCAGACTTCTGCAAAGTTGGGTTTCCGTGAGTATGTCAAGGCTTTGGAGGAGGAGAGGAATAAGATTCAAGTTTTCCAGAGGGAGCTCCCTCTCTGCTTGGAGCTTGTCACCCAAGCTATTGAGAGGTGCAGGCAGCAGATTTCAGATACAACCGCCGATTACCTGCATGGACAATCTGAGTGTTCTGAGCAGACTTCAAGTGAGGGGCATGTTTTTGAGGAATTCATTCCATTAAAACGGATTTCATCTTCAGACAGTGATGAGGATGAAGTTCAAGAGTCTCAGGAGGCTAAGGACACTGAGAAGGATGATAAGAAAAAACCAGACTGGCTTAGATCTGTACAGCTGTGGAATACAACCCCAGATGCACCACTCAAAGAGGAATTGCCTAGAAAGGCTTTAGTAATGGAGGTGAAGAGAAATGGGGGTGCTTTTCAGCCTTTCCAAAGGGAAAAAAGCATTGGAAAGACAAATGGACCGGTGGCTAAAGAACCTTCTTCGGCTCCGGCTACTAGTTCCACCACGGACACCGCGAGTGGAGGCAGTGGTGGGAGCAACAAGAAAGAAGAGAAAGATGGACAAGGTCAGAGGAAACAAAGGCGAAACTGGTCACCGGAGTTGCACCGCCGGTTCTTGCATGCTCTTCAACAGCTTGGTGGTTCACATGCTGCTACACCAAAACAAATTAGAGAGTTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTGCAGAAATATCGTTTACATACTCGAAGACCAACTCCAACAATGCACGGCAACAGTAACAGCGGCGCACCAGCACCGCAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCCCAGGAGTACGCAGCAATGGCAGCAACCACTGCTTCTGGGGAGGCAGCCAATGGAATATATGCACCCTTGGCTTCAACTCCTGCTGTCACACAGGTCTCACCACCAATTCAAAGACCGCGGCCAAAGCAACCCAAACCCTTTCATTCAGACGAAAGGGTCAGCCACAGCGAAGGCCGCGGTCACTCCAATTCGACTGCTACGTCATCCTCCACTCACACCCCTGCTTCCCCTGTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

371

Amino Acids

40.81

Weight (kDa)

6.88

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 15 - 54 2e-14 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 207 - 258 2.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1028, 1072
Acc36I ACCTGC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 865
AccII CGCG 3 cut(s) 554, 991, 1050
AciI CCGC 9 cut(s) 174, 552, 646, 822, 836, 989, 991, 1048, 1050
AcoI YGGCCR 1 cut(s) 992
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 2 cut(s) 363, 881
AgeI ACCGGT 1 cut(s) 499
AgsI TTSAA 6 cut(s) 89, 219, 296, 668, 948, 983
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 1 cut(s) 873
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 5 cut(s) 106, 124, 137, 367, 673
AluI AGCT 5 cut(s) 106, 124, 137, 367, 673
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 2 cut(s) 306, 973
AoxI GGCC 2 cut(s) 992, 1045
ApeKI GCWGC 5 cut(s) 154, 689, 884, 893, 917
ApoI RAATTY 1 cut(s) 242
AsiGI ACCGGT 1 cut(s) 499
Asp700I GAANNNNTTC 1 cut(s) 246
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 1 cut(s) 497
AsuHPI GGTGA 4 cut(s) 121, 445, 624, 963
AvaII GGWCC 1 cut(s) 497
BanI GGYRCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 1 cut(s) 793
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 5 cut(s) 166, 676, 896, 905, 929
BccI CCATC 2 cut(s) 590, 722
BceAI ACGGC 1 cut(s) 823
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 1 cut(s) 875
BcoDI GTCTC 2 cut(s) 306, 973
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 2 cut(s) 411, 534
BfuAI ACCTGC 1 cut(s) 192
BglII AGATCT 1 cut(s) 356
BisI GCNGC 8 cut(s) 155, 690, 823, 885, 894, 918, 992, 1048
BlsI GCNGC 8 cut(s) 156, 691, 824, 886, 895, 919, 993, 1049
Bme1390I CCNGG 1 cut(s) 875
Bme18I GGWCC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 497
BmiI GGNNCC 2 cut(s) 525, 867
BmrFI CCNGG 1 cut(s) 875
BmsI GCATC 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 793
Bpu10I CCTNAGC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 973
BsaJI CCNNGG 5 cut(s) 543, 873, 939, 989, 1048
BsaWI WCCGGW 2 cut(s) 499, 634
Bse118I RCCGGY 2 cut(s) 499, 648
Bse1I ACTGG 2 cut(s) 353, 632
Bse3DI GCAATG 1 cut(s) 894
BseBI CCWGG 1 cut(s) 875
BseDI CCNNGG 5 cut(s) 543, 873, 939, 989, 1048
BseGI GGATG 3 cut(s) 292, 334, 1076
BseMI GCAATG 1 cut(s) 894
BseMII CTCAG 4 cut(s) 189, 198, 312, 317
BseNI ACTGG 2 cut(s) 353, 632
BseRI GAGGAG 2 cut(s) 83, 86
BseXI GCAGC 5 cut(s) 166, 676, 896, 905, 929
BsgI GTGCAG 1 cut(s) 169
Bsh1236I CGCG 3 cut(s) 554, 991, 1050
BshFI GGCC 2 cut(s) 994, 1047
BshNI GGYRCC 1 cut(s) 865
BshTI ACCGGT 1 cut(s) 499
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 4 cut(s) 500, 527, 635, 649
BsmAI GTCTC 2 cut(s) 306, 973
BsnI GGCC 2 cut(s) 994, 1047
Bso31I GGTCTC 1 cut(s) 973
Bsp1286I GDGCHC 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 361
Bsp143I GATC 1 cut(s) 356
BspACI CCGC 9 cut(s) 174, 552, 646, 822, 836, 989, 991, 1048, 1050
BspANI GGCC 2 cut(s) 994, 1047
BspCNI CTCAG 4 cut(s) 190, 199, 313, 316
BspFNI CGCG 3 cut(s) 554, 991, 1050
BspLI GGNNCC 2 cut(s) 525, 867
BspMI ACCTGC 1 cut(s) 192
BspQI GCTCTTC 1 cut(s) 669
BspT107I GGYRCC 1 cut(s) 865
BspTNI GGTCTC 1 cut(s) 973
BsrDI GCAATG 1 cut(s) 894
BsrFI RCCGGY 2 cut(s) 499, 648
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 2 cut(s) 353, 632
BssAI RCCGGY 2 cut(s) 499, 648
BssECI CCNNGG 5 cut(s) 543, 873, 939, 989, 1048
BssMI GATC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 939
Bst2UI CCWGG 1 cut(s) 875
Bst4CI ACNGT 2 cut(s) 278, 815
Bst6I CTCTTC 3 cut(s) 431, 582, 669
BstAPI GCANNNNNTGC 1 cut(s) 902
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 2 cut(s) 152, 660
BstDEI CTNAG 6 cut(s) 198, 207, 303, 312, 321, 353
BstDSI CCRYGG 3 cut(s) 543, 989, 1048
BstEII GGTNACC 1 cut(s) 630
BstF5I GGATG 3 cut(s) 292, 334, 1076
BstFNI CGCG 3 cut(s) 554, 991, 1050
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 1 cut(s) 359
BstMAI GTCTC 2 cut(s) 306, 973
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 6 cut(s) 890, 893, 902, 941, 997, 1047
BstNI CCWGG 1 cut(s) 875
BstNSI RCATGY 3 cut(s) 233, 662, 689
BstPI GGTNACC 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 873
BstUI CGCG 3 cut(s) 554, 991, 1050
BstV1I GCAGC 5 cut(s) 166, 676, 896, 905, 929
BstV2I GAAGAC 1 cut(s) 793
BstX2I RGATCY 1 cut(s) 356
BstYI RGATCY 1 cut(s) 356
BsuRI GGCC 2 cut(s) 994, 1047
BtgI CCRYGG 3 cut(s) 543, 989, 1048
BtsCI GGATG 3 cut(s) 292, 334, 1076
BtsI GCAGTG 2 cut(s) 571, 900
BtsIMutI CAGTG 4 cut(s) 283, 318, 571, 900
BveI ACCTGC 1 cut(s) 192
Cac8I GCNNGC 2 cut(s) 152, 660
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 2 cut(s) 499, 648
Cfr13I GGNCC 1 cut(s) 497
Cfr42I CCGCGG 2 cut(s) 992, 1051
Csp6I GTAC 2 cut(s) 362, 880
CspAI ACCGGT 1 cut(s) 499
CviAII CATG 4 cut(s) 188, 230, 659, 686
CviQI GTAC 2 cut(s) 362, 880
DdeI CTNAG 6 cut(s) 198, 207, 303, 312, 321, 353
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
DrdI GACNNNNNNGTC 2 cut(s) 1028, 1072
DseDI GACNNNNNNGTC 2 cut(s) 1028, 1072
EaeI YGGCCR 1 cut(s) 992
Eam1104I CTCTTC 3 cut(s) 431, 582, 669
EarI CTCTTC 3 cut(s) 431, 582, 669
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 939
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 973
Eco47I GGWCC 1 cut(s) 497
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 255
Eco91I GGTNACC 1 cut(s) 630
EcoICRI GAGCTC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 630
EcoRI GAATTC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 873
EcoT14I CCWWGG 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 939
FaeI CATG 4 cut(s) 191, 233, 662, 689
FaiI YATR 8 cut(s) 54, 189, 231, 660, 687, 780, 931, 933
FatI CATG 4 cut(s) 187, 229, 658, 685
Fnu4HI GCNGC 8 cut(s) 155, 690, 823, 885, 894, 918, 992, 1048
FokI GGATG 3 cut(s) 299, 341, 1063
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 8 cut(s) 155, 690, 823, 885, 894, 918, 992, 1048
FspBI CTAG 2 cut(s) 411, 534
GlaI GCGC 1 cut(s) 826
GluI GCNGC 8 cut(s) 155, 690, 823, 885, 894, 918, 992, 1048
HaeIII GGCC 2 cut(s) 994, 1047
HapII CCGG 4 cut(s) 500, 527, 635, 649
HhaI GCGC 1 cut(s) 827
Hin1II CATG 4 cut(s) 191, 233, 662, 689
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HinfI GANTC 3 cut(s) 5, 85, 299
HpaII CCGG 4 cut(s) 500, 527, 635, 649
HphI GGTGA 4 cut(s) 121, 445, 624, 963
Hpy166II GTNNAC 3 cut(s) 9, 683, 776
Hpy188I TCNGA 6 cut(s) 166, 199, 208, 274, 609, 1021
Hpy188III TCNNGA 3 cut(s) 97, 296, 305
Hpy8I GTNNAC 3 cut(s) 9, 683, 776
HpyAV CCTTC 4 cut(s) 319, 525, 715, 1037
HpyCH4III ACNGT 2 cut(s) 278, 815
HpyCH4IV ACGT 1 cut(s) 1073
HpyF10VI GCNNNNNNNGC 6 cut(s) 890, 893, 902, 941, 997, 1047
HpyF3I CTNAG 6 cut(s) 198, 207, 303, 312, 321, 353
HpySE526I ACGT 1 cut(s) 1073
Hsp92II CATG 4 cut(s) 191, 233, 662, 689
HspAI GCGC 1 cut(s) 825
KspI CCGCGG 2 cut(s) 992, 1051
Kzo9I GATC 1 cut(s) 356
LguI GCTCTTC 1 cut(s) 669
LmnI GCTCC 5 cut(s) 103, 111, 121, 529, 573
Lsp1109I GCAGC 5 cut(s) 166, 676, 896, 905, 929
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 411, 534
MaeII ACGT 1 cut(s) 1073
MaeIII GTNAC 5 cut(s) 127, 630, 815, 958, 1052
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 6 cut(s) 261, 448, 510, 599, 656, 798
MflI RGATCY 1 cut(s) 356
MhlI GDGCHC 1 cut(s) 108
MluCI AATT 6 cut(s) 242, 404, 705, 839, 978, 1060
MlyI GAGTC 2 cut(s) 14, 308
MmeI TCCRAC 1 cut(s) 821
MroXI GAANNNNTTC 1 cut(s) 246
MseI TTAA 2 cut(s) 254, 716
MslI CAYNNNNRTG 1 cut(s) 863
MspA1I CMGCKG 4 cut(s) 367, 822, 991, 1050
MspI CCGG 4 cut(s) 500, 527, 635, 649
MspR9I CCNGG 1 cut(s) 875
MvaI CCWGG 1 cut(s) 875
MvnI CGCG 3 cut(s) 554, 991, 1050
MwoI GCNNNNNNNGC 6 cut(s) 890, 893, 902, 941, 997, 1047
NdeII GATC 1 cut(s) 356
NlaIII CATG 4 cut(s) 191, 233, 662, 689
NlaIV GGNNCC 2 cut(s) 525, 867
NmuCI GTSAC 4 cut(s) 127, 630, 958, 1052
NspI RCATGY 3 cut(s) 233, 662, 689
PaeI GCATGC 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 669
PcsI WCGNNNNNNNCGW 2 cut(s) 551, 1070
PdmI GAANNNNTTC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 85
PflFI GACNNNGTC 1 cut(s) 603
PinAI ACCGGT 1 cut(s) 499
PkrI GCNGC 8 cut(s) 156, 691, 824, 886, 895, 919, 993, 1049
PleI GAGTC 2 cut(s) 13, 307
PpsI GAGTC 2 cut(s) 13, 307
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 873
PspEI GGTNACC 1 cut(s) 630
PspGI CCWGG 1 cut(s) 873
PspN4I GGNNCC 2 cut(s) 525, 867
PspPI GGNCC 1 cut(s) 497
PsuI RGATCY 1 cut(s) 356
PsyI GACNNNGTC 1 cut(s) 603
PvuII CAGCTG 1 cut(s) 367
RsaI GTAC 2 cut(s) 363, 881
RsaNI GTAC 2 cut(s) 362, 880
RseI CAYNNNNRTG 1 cut(s) 863
SacI GAGCTC 1 cut(s) 108
SacII CCGCGG 2 cut(s) 992, 1051
SapI GCTCTTC 1 cut(s) 669
SaqAI TTAA 2 cut(s) 254, 716
SatI GCNGC 8 cut(s) 155, 690, 823, 885, 894, 918, 992, 1048
Sau3AI GATC 1 cut(s) 356
Sau96I GGNCC 1 cut(s) 497
SchI GAGTC 2 cut(s) 14, 308
ScrFI CCNGG 1 cut(s) 875
SduI GDGCHC 1 cut(s) 108
SfaNI GCATC 1 cut(s) 376
Sfr303I CCGCGG 2 cut(s) 992, 1051
SgrBI CCGCGG 2 cut(s) 992, 1051
SinI GGWCC 1 cut(s) 497
SmiMI CAYNNNNRTG 1 cut(s) 863
SpeI ACTAGT 1 cut(s) 533
SphI GCATGC 1 cut(s) 662
Sse9I AATT 6 cut(s) 242, 404, 705, 839, 978, 1060
SsiI CCGC 9 cut(s) 174, 552, 646, 822, 836, 989, 991, 1048, 1050
SspMI CTAG 2 cut(s) 411, 534
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 873
StyI CCWWGG 1 cut(s) 939
TaaI ACNGT 2 cut(s) 278, 815
TaiI ACGT 1 cut(s) 1076
TaqI TCGA 2 cut(s) 784, 1064
TasI AATT 6 cut(s) 242, 404, 705, 839, 978, 1060
TatI WGTACW 1 cut(s) 361
TauI GCSGC 3 cut(s) 825, 994, 1050
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 254, 716
Tru9I TTAA 2 cut(s) 254, 716
TscAI CASTG 4 cut(s) 283, 325, 571, 907
TseFI GTSAC 4 cut(s) 127, 630, 958, 1052
TseI GCWGC 5 cut(s) 154, 689, 884, 893, 917
Tsp45I GTSAC 4 cut(s) 127, 630, 958, 1052
TspDTI ATGAA 6 cut(s) 235, 255, 303, 734, 759, 1004
TspGWI ACGGA 3 cut(s) 35, 274, 560
TspRI CASTG 4 cut(s) 283, 325, 571, 907
Tth111I GACNNNGTC 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 1 cut(s) 242
XceI RCATGY 3 cut(s) 233, 662, 689
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 2 cut(s) 411, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.