FvH4_4g27990
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0010335
Physical Location & Seq
Reverse (-)
28774220 .. 28776711
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g27990.t1

Sequence Viewer

Length: 1179 bp
ATGTTAATGAATTCGACAGAGGAAATGCAGGGTTCAAAGCTTGGTTTGTATGTGAAGGCCTTGGAGGTAGAGAAGCAAAAGATTCAAGTTTTCCAAAGAGAACTGCCTTTGTGCTTGGAGCTTGTCACTCAAGCTATTGAGAGGTGTAAGCAGGAGATATCGGATAATAGTATTGAGTATAGACATGGGCAATCCGAGTGTTCGGAGCAGACATCAAGTGAGGGACATGTGTTTGAGGAGTTTATACCATTGAAGAGGAGTTCATCATCTGATAGTGATGATGAGGAGCTAGAAGAGTCTGATCATCTCCGGAATAAGAATAATGACAAGGATAAGAGTAACAGCGGTGATAAGAAGAAATCTGACTGGCTTAGATCTGTTCAGCTTTGGAATACAACCCCAGATGTACCCCAAAAAGAGGAATTGCCTAGGAAGGCTTCAGTGGTGGAGGTTAAGAGAAATGGGGGTGCTTTTCATCCTTTCCAGAAGGAGAAAAGCATTGGGAATACTAATGGGGCAGTGGCGAAATCGCCTGCTTCGGCTCCAGCCACGAGCTCAACTGCTGATACTGTTAGCGGTGGCAGCGGGGGTGGAAACAGCAAGAAGGAGGATAAAGAAGGACAAAGGAAACAGAGGAGGAACTGGTCGCCGGAGTTGCATCGCCGGTTTCTGCATGCACTTCAACAGCTTGGAGGTTCACACACTGCTACACCTAAGCAAATTAGGGAGCTGATGAAGGTTGATGGGCTAACTAATGATGAAGTCAAAAGCCATTTACAGAAATATCGTCTACACACTCGAAGGCCAACTCCAACAATCCATAACAACAACAACAACAACAACAGCAATGCACAGGCACCACAATTTGTGGTTGTGGGAGGCATTTGGGTGCCACCGCAAGATTACAATGCAGCAGTAGCTGCTGCAAACACCGCCTCAGGCGAAGCAACCAGGGTTGCTGCTGCAGCCAATGGAATATATGCACCCGTGGCTTCAGCACCTTCTGCAGTCACTCAGGTGTCCCCATCAACGATGCATAGACCGCGACTGAAGAAACCAGAGCCCTCTTCCCATTCGGAAGAAAGGGCCAGTCATAGCAGCGAAGTTCGCGGTCACTCCAAGTCCTCGGCTACATCACCCTCCTCCACTCACACCCCTGCCTCCCCTCCTGTGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

393

Amino Acids

42.89

Weight (kDa)

8.71

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHO5_N PF26575 7 - 53 1.6e-13 HHO5-like, N-terminal domain
Myb_DNA-binding PF00249 212 - 263 2.4e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 856, 889
AccI GTMKAC 1 cut(s) 790
AccII CGCG 2 cut(s) 1045, 1110
AccIII TCCGGA 1 cut(s) 309
AciI CCGC 7 cut(s) 345, 576, 585, 896, 933, 1043, 1110
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 3 cut(s) 423, 978, 1070
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 1 cut(s) 418
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 4 cut(s) 36, 86, 253, 683
AjnI CCWGG 1 cut(s) 950
AleI CACNNNNGTG 1 cut(s) 1016
AluBI AGCT 9 cut(s) 40, 121, 134, 289, 385, 555, 688, 730, 920
AluI AGCT 9 cut(s) 40, 121, 134, 289, 385, 555, 688, 730, 920
Alw21I GWGCWC 1 cut(s) 557
AlwNI CAGNNNCTG 1 cut(s) 920
Aor13HI TCCGGA 1 cut(s) 309
AoxI GGCC 3 cut(s) 57, 803, 1086
ApeKI GCWGC 8 cut(s) 582, 911, 920, 923, 959, 962, 965, 1098
ApoI RAATTY 1 cut(s) 10
AspA2I CCTAGG 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 1086
AsuHPI GGTGA 2 cut(s) 359, 1128
AvrII CCTAGG 1 cut(s) 428
AxyI CCTNAGG 1 cut(s) 937
BanI GGYRCC 2 cut(s) 856, 889
BanII GRGCYC 2 cut(s) 557, 1065
BauI CACGAG 1 cut(s) 550
Bbv12I GWGCWC 1 cut(s) 557
BbvI GCAGC 8 cut(s) 594, 907, 910, 923, 946, 949, 977, 1110
BccI CCATC 2 cut(s) 737, 1033
BciT130I CCWGG 1 cut(s) 952
BclI TGATCA 1 cut(s) 301
BfaI CTAG 2 cut(s) 290, 429
BfmI CTRYAG 2 cut(s) 963, 1005
BglII AGATCT 1 cut(s) 374
BisI GCNGC 8 cut(s) 583, 912, 921, 924, 960, 963, 966, 1099
BlnI CCTAGG 1 cut(s) 428
BlsI GCNGC 8 cut(s) 584, 913, 922, 925, 961, 964, 967, 1100
Bme1390I CCNGG 1 cut(s) 952
BmgT120I GGNCC 1 cut(s) 1086
BmiI GGNNCC 3 cut(s) 543, 858, 891
BmrFI CCNGG 1 cut(s) 952
BmsI GCATC 2 cut(s) 667, 1023
BpmI CTGGAG 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 60, 428, 951, 987, 1125
BsaWI WCCGGW 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 418
Bse118I RCCGGY 1 cut(s) 663
Bse1I ACTGG 3 cut(s) 371, 647, 1089
Bse21I CCTNAGG 1 cut(s) 937
Bse3DI GCAATG 1 cut(s) 853
BseAI TCCGGA 1 cut(s) 309
BseBI CCWGG 1 cut(s) 952
BseDI CCNNGG 5 cut(s) 60, 428, 951, 987, 1125
BseGI GGATG 1 cut(s) 475
BseLI CCNNNNNNNGG 1 cut(s) 418
BseMI GCAATG 1 cut(s) 853
BseMII CTCAG 2 cut(s) 951, 1028
BseNI ACTGG 3 cut(s) 371, 647, 1089
BseRI GAGGAG 5 cut(s) 251, 271, 299, 649, 1132
BseXI GCAGC 8 cut(s) 594, 907, 910, 923, 946, 949, 977, 1110
Bsh1236I CGCG 2 cut(s) 1045, 1110
BshFI GGCC 3 cut(s) 59, 805, 1088
BshNI GGYRCC 2 cut(s) 856, 889
BsiHKAI GWGCWC 1 cut(s) 557
BsiSI CCGG 3 cut(s) 310, 650, 664
BslFI GGGAC 2 cut(s) 237, 1006
BslI CCNNNNNNNGG 1 cut(s) 418
BsmFI GGGAC 2 cut(s) 237, 1006
BsnI GGCC 3 cut(s) 59, 805, 1088
Bsp1286I GDGCHC 2 cut(s) 557, 1065
Bsp13I TCCGGA 1 cut(s) 309
Bsp143I GATC 2 cut(s) 301, 374
BspACI CCGC 7 cut(s) 345, 576, 585, 896, 933, 1043, 1110
BspANI GGCC 3 cut(s) 59, 805, 1088
BspCNI CTCAG 2 cut(s) 950, 1027
BspEI TCCGGA 1 cut(s) 309
BspFNI CGCG 2 cut(s) 1045, 1110
BspLI GGNNCC 3 cut(s) 543, 858, 891
BspMAI CTGCAG 2 cut(s) 967, 1009
BspT107I GGYRCC 2 cut(s) 856, 889
BsrDI GCAATG 1 cut(s) 853
BsrFI RCCGGY 1 cut(s) 663
BsrI ACTGG 3 cut(s) 371, 647, 1089
BssAI RCCGGY 1 cut(s) 663
BssECI CCNNGG 5 cut(s) 60, 428, 951, 987, 1125
BssMI GATC 2 cut(s) 301, 374
BssSI CACGAG 1 cut(s) 550
BssT1I CCWWGG 2 cut(s) 60, 428
Bst2BI CACGAG 1 cut(s) 550
Bst2UI CCWGG 1 cut(s) 952
Bst4CI ACNGT 1 cut(s) 571
Bst6I CTCTTC 3 cut(s) 248, 288, 1072
BstAPI GCANNNNNTGC 2 cut(s) 920, 1004
BstC8I GCNNGC 2 cut(s) 534, 675
BstDEI CTNAG 4 cut(s) 371, 714, 937, 1014
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 1 cut(s) 475
BstFNI CGCG 2 cut(s) 1045, 1110
BstKTI GATC 2 cut(s) 304, 377
BstMBI GATC 2 cut(s) 301, 374
BstNI CCWGG 1 cut(s) 952
BstNSI RCATGY 2 cut(s) 230, 677
BstSCI CCNGG 1 cut(s) 950
BstSFI CTRYAG 2 cut(s) 963, 1005
BstUI CGCG 2 cut(s) 1045, 1110
BstV1I GCAGC 8 cut(s) 594, 907, 910, 923, 946, 949, 977, 1110
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
Bsu36I CCTNAGG 1 cut(s) 937
BsuRI GGCC 3 cut(s) 59, 805, 1088
BtgI CCRYGG 1 cut(s) 987
BtgZI GCGATG 1 cut(s) 644
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 2 cut(s) 525, 702
BtsIMutI CAGTG 3 cut(s) 447, 525, 702
Cac8I GCNNGC 2 cut(s) 534, 675
CaiI CAGNNNCTG 1 cut(s) 920
Cfr10I RCCGGY 1 cut(s) 663
Cfr13I GGNCC 1 cut(s) 1086
Csp6I GTAC 1 cut(s) 407
CviAII CATG 3 cut(s) 185, 227, 674
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 4 cut(s) 371, 714, 937, 1014
DpnI GATC 2 cut(s) 303, 376
DpnII GATC 2 cut(s) 301, 374
Eam1104I CTCTTC 3 cut(s) 248, 288, 1072
EarI CTCTTC 3 cut(s) 248, 288, 1072
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 60, 428
Eco147I AGGCCT 1 cut(s) 59
Eco24I GRGCYC 2 cut(s) 557, 1065
Eco32I GATATC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 555
Eco57I CTGAAG 3 cut(s) 423, 978, 1070
Eco81I CCTNAGG 1 cut(s) 937
EcoICRI GAGCTC 1 cut(s) 555
EcoRI GAATTC 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 950
EcoRV GATATC 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 60, 428
EcoT22I ATGCAT 1 cut(s) 1038
EcoT38I GRGCYC 2 cut(s) 557, 1065
ErhI CCWWGG 2 cut(s) 60, 428
FaeI CATG 3 cut(s) 188, 230, 677
FaqI GGGAC 2 cut(s) 237, 1006
FatI CATG 3 cut(s) 184, 226, 673
FauI CCCGC 1 cut(s) 578
FbaI TGATCA 1 cut(s) 301
FblI GTMKAC 1 cut(s) 790
Fnu4HI GCNGC 8 cut(s) 583, 912, 921, 924, 960, 963, 966, 1099
FokI GGATG 1 cut(s) 462
FriOI GRGCYC 2 cut(s) 557, 1065
Fsp4HI GCNGC 8 cut(s) 583, 912, 921, 924, 960, 963, 966, 1099
FspBI CTAG 2 cut(s) 290, 429
GluI GCNGC 8 cut(s) 583, 912, 921, 924, 960, 963, 966, 1099
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 3 cut(s) 59, 805, 1088
HapII CCGG 3 cut(s) 310, 650, 664
Hin1II CATG 3 cut(s) 188, 230, 677
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 2 cut(s) 82, 296
HpaII CCGG 3 cut(s) 310, 650, 664
HphI GGTGA 2 cut(s) 359, 1128
Hpy166II GTNNAC 2 cut(s) 698, 791
Hpy188I TCNGA 7 cut(s) 163, 196, 205, 271, 301, 364, 1078
Hpy188III TCNNGA 2 cut(s) 310, 484
Hpy8I GTNNAC 2 cut(s) 698, 791
HpyAV CCTTC 8 cut(s) 49, 427, 481, 598, 611, 730, 795, 1011
HpyCH4III ACNGT 1 cut(s) 571
HpyF3I CTNAG 4 cut(s) 371, 714, 937, 1014
Hsp92II CATG 3 cut(s) 188, 230, 677
Kpn2I TCCGGA 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 2 cut(s) 301, 374
LmnI GCTCC 5 cut(s) 118, 205, 286, 547, 727
Lsp1109I GCAGC 8 cut(s) 594, 907, 910, 923, 946, 949, 977, 1110
LweI GCATC 2 cut(s) 667, 1023
MaeI CTAG 2 cut(s) 290, 429
MaeIII GTNAC 4 cut(s) 124, 338, 1009, 1112
MalI GATC 2 cut(s) 303, 376
MboI GATC 2 cut(s) 301, 374
MboII GAAGA 6 cut(s) 265, 305, 367, 1059, 1063, 1091
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 557, 1065
MluCI AATT 4 cut(s) 10, 422, 720, 863
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 836
Mph1103I ATGCAT 1 cut(s) 1038
MroI TCCGGA 1 cut(s) 309
MseI TTAA 3 cut(s) 5, 453, 1177
MslI CAYNNNNRTG 2 cut(s) 887, 1016
MspA1I CMGCKG 2 cut(s) 345, 585
MspI CCGG 3 cut(s) 310, 650, 664
MspR9I CCNGG 1 cut(s) 952
MvaI CCWGG 1 cut(s) 952
MvnI CGCG 2 cut(s) 1045, 1110
NdeII GATC 2 cut(s) 301, 374
NlaIII CATG 3 cut(s) 188, 230, 677
NlaIV GGNNCC 3 cut(s) 543, 858, 891
NmeAIII GCCGAG 1 cut(s) 1106
NmuCI GTSAC 3 cut(s) 124, 1009, 1112
NsiI ATGCAT 1 cut(s) 1038
NspI RCATGY 2 cut(s) 230, 677
OliI CACNNNNGTG 1 cut(s) 1016
PaeI GCATGC 1 cut(s) 677
PceI AGGCCT 1 cut(s) 59
PciI ACATGT 1 cut(s) 226
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 8 cut(s) 584, 913, 922, 925, 961, 964, 967, 1100
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
PscI ACATGT 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 950
PspGI CCWGG 1 cut(s) 950
PspN4I GGNNCC 3 cut(s) 543, 858, 891
PspPI GGNCC 1 cut(s) 1086
PstI CTGCAG 2 cut(s) 967, 1009
PstNI CAGNNNCTG 1 cut(s) 920
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 2 cut(s) 887, 1016
SacI GAGCTC 1 cut(s) 557
SaqAI TTAA 3 cut(s) 5, 453, 1177
SatI GCNGC 8 cut(s) 583, 912, 921, 924, 960, 963, 966, 1099
Sau3AI GATC 2 cut(s) 301, 374
Sau96I GGNCC 1 cut(s) 1086
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 952
SduI GDGCHC 2 cut(s) 557, 1065
SfaNI GCATC 2 cut(s) 667, 1023
SfcI CTRYAG 2 cut(s) 963, 1005
SmiMI CAYNNNNRTG 2 cut(s) 887, 1016
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SphI GCATGC 1 cut(s) 677
Sse9I AATT 4 cut(s) 10, 422, 720, 863
SseBI AGGCCT 1 cut(s) 59
SsiI CCGC 7 cut(s) 345, 576, 585, 896, 933, 1043, 1110
SspMI CTAG 2 cut(s) 290, 429
SstI GAGCTC 1 cut(s) 557
StuI AGGCCT 1 cut(s) 59
StyD4I CCNGG 1 cut(s) 950
StyI CCWWGG 2 cut(s) 60, 428
TaaI ACNGT 1 cut(s) 571
TaqI TCGA 2 cut(s) 14, 799
TasI AATT 4 cut(s) 10, 422, 720, 863
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 3 cut(s) 5, 453, 1177
Tru9I TTAA 3 cut(s) 5, 453, 1177
TscAI CASTG 3 cut(s) 447, 525, 709
TseFI GTSAC 3 cut(s) 124, 1009, 1112
TseI GCWGC 8 cut(s) 582, 911, 920, 923, 959, 962, 965, 1098
Tsp45I GTSAC 3 cut(s) 124, 1009, 1112
TspDTI ATGAA 5 cut(s) 23, 252, 464, 749, 774
TspRI CASTG 3 cut(s) 447, 525, 709
XapI RAATTY 1 cut(s) 10
XceI RCATGY 2 cut(s) 230, 677
XmaJI CCTAGG 1 cut(s) 428
XmiI GTMKAC 1 cut(s) 790
XspI CTAG 2 cut(s) 290, 429
Zsp2I ATGCAT 1 cut(s) 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.