AT1G26650

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011883
Physical Location & Seq
Forward (+)
9210051 .. 9211588
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26650.1

Sequence Viewer

Length: 1008 bp
ATGGAGACGGAAACGAATCAGGTTTTACGGAAACCGGAGCTAAAATCATACAGTCACAAACAATTTCACTCCTCAAATGCGTTAGAGATCTTAAGAGAAACAGTTCGAATTCTCCGGTACAATCTTGGTGCTTTAATGTTAACTACTGCTGTTTTGATCTGTCCTGTCTCTGCTTTGCTCTTACCAAACTTTTTAGTTGATCAATCATTAGTGAATAAACTCACAGTGAAGCTTCTTTTAGTGGCGAAATCAAGTGGTCTTCCTTTGCAGCCTTTTGTCAAACATTCTTGTCAGAAATTCGCTGAAACTGCTGTTTCGTCTGCAATGTGTTTCCCTGTGTTTATCACTGTGTCTCTGTTGTCTAAAGCAGCTGTGGTTTACTCAGTGGATTGTTCTTACTCGAGGGAAGTAGTTGATATAAGCAAGTTCTTGGTTATATTGCAGAAGATATGGAGGAGAGTTGTGTTCACTTACGTTTGGATTTGCATTCTGATTGTTGGTTGCTTCACTTTCTTTTGCGTTCTTCTTGTAGCAATCTGCAGTTCCTTCTCTGTTCTCGGCTTCTCTCCAGATTTCAATGTTTATGGAGCTATGCTAGTTGGTTTAGCCTTCTCTGTAGTTTTCGCTAACGCGATTATAATCTGCAACACTGCGATTGTGATCTCGGTTTTGGAAGATGTTTCAGGGTTAGGAGCATTGATGAGAGCTAGTGATTTGATCAAAGGGCAGATTCAGGTTGGTTTGTTGATGTTCCTTGGATCAACTTTAGGATTGGCGTTTGTGGAAGGATTGTTTGATCACAGAGTGAAGAAAGTTAGTTATGGAGATGGCTCTTCGAGGTTATGGGAAGGACCTCTTTTGGTGTTGATGTATTCCTTTGTGACACTTATAGATTCGATGATGAGTGCAGTGTTCTATTTTAGCTGCCGAGTTTATTATAGTATGGAAGCTTCTAGAGGTGAAACTCAGCCAATCATGGAAACGGTTACGGTTGTGGATGCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.02

Weight (kDa)

7.99

Isoelectric Point (pI)

29.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 638
AccII CGCG 1 cut(s) 632
AclWI GGATC 1 cut(s) 766
AcsI RAATTY 2 cut(s) 108, 296
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 1 cut(s) 119
AflII CTTAAG 1 cut(s) 91
AgsI TTSAA 1 cut(s) 577
AluBI AGCT 7 cut(s) 40, 232, 371, 590, 707, 924, 950
AluI AGCT 7 cut(s) 40, 232, 371, 590, 707, 924, 950
Alw26I GTCTC 2 cut(s) 172, 357
AlwI GGATC 1 cut(s) 766
Ama87I CYCGRG 1 cut(s) 400
ApeKI GCWGC 3 cut(s) 268, 368, 924
ApoI RAATTY 2 cut(s) 108, 296
Asp700I GAANNNNTTC 1 cut(s) 102
AspS9I GGNCC 1 cut(s) 851
AsuHPI GGTGA 1 cut(s) 971
AsuII TTCGAA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 400
AvaII GGWCC 1 cut(s) 851
BarI GAAGNNNNNNTAC 2 cut(s) 934, 966
BbsI GAAGAC 1 cut(s) 251
BbvI GCAGC 3 cut(s) 280, 380, 911
BccI CCATC 1 cut(s) 821
BclI TGATCA 3 cut(s) 199, 717, 796
BcoDI GTCTC 2 cut(s) 172, 357
BfaI CTAG 3 cut(s) 596, 708, 954
BfmI CTRYAG 2 cut(s) 538, 615
BfrI CTTAAG 1 cut(s) 91
BglII AGATCT 1 cut(s) 87
BisI GCNGC 3 cut(s) 269, 369, 925
BlsI GCNGC 3 cut(s) 270, 370, 926
Bme18I GGWCC 1 cut(s) 851
BmeT110I CYCGRG 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 851
BmsI GCATC 1 cut(s) 988
BpiI GAAGAC 1 cut(s) 251
BpmI CTGGAG 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 106
BsaBI GATNNNNATC 2 cut(s) 638, 659
BsaJI CCNNGG 1 cut(s) 754
BsaWI WCCGGW 2 cut(s) 34, 114
Bse3DI GCAATG 1 cut(s) 330
Bse8I GATNNNNATC 2 cut(s) 638, 659
BseDI CCNNGG 1 cut(s) 754
BseGI GGATG 1 cut(s) 1003
BseJI GATNNNNATC 2 cut(s) 638, 659
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 3 cut(s) 396, 980, 993
BseRI GAGGAG 2 cut(s) 61, 469
BseXI GCAGC 3 cut(s) 280, 380, 911
BsgI GTGCAG 1 cut(s) 927
Bsh1236I CGCG 1 cut(s) 632
BsiHKCI CYCGRG 1 cut(s) 400
BsiSI CCGG 2 cut(s) 35, 115
BsmAI GTCTC 2 cut(s) 172, 357
BsmI GAATGC 1 cut(s) 486
BsoBI CYCGRG 1 cut(s) 400
Bsp119I TTCGAA 1 cut(s) 106
Bsp143I GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
BspCNI CTCAG 3 cut(s) 395, 979, 994
BspFNI CGCG 1 cut(s) 632
BspMAI CTGCAG 1 cut(s) 542
BspPI GGATC 1 cut(s) 766
BspQI GCTCTTC 1 cut(s) 838
BspT104I TTCGAA 1 cut(s) 106
BspTI CTTAAG 1 cut(s) 91
BsrDI GCAATG 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 754
BssMI GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
BssT1I CCWWGG 1 cut(s) 754
Bst4CI ACNGT 6 cut(s) 53, 103, 226, 349, 985, 991
Bst6I CTCTTC 1 cut(s) 838
BstAFI CTTAAG 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 106
BstDEI CTNAG 3 cut(s) 382, 966, 1002
BstF5I GGATG 1 cut(s) 1003
BstFNI CGCG 1 cut(s) 632
BstKTI GATC 7 cut(s) 90, 159, 202, 663, 720, 761, 799
BstMAI GTCTC 2 cut(s) 172, 357
BstMBI GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstSFI CTRYAG 2 cut(s) 538, 615
BstUI CGCG 1 cut(s) 632
BstV1I GCAGC 3 cut(s) 280, 380, 911
BstV2I GAAGAC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BtsCI GGATG 1 cut(s) 1003
BtsI GCAGTG 2 cut(s) 648, 915
BtsIMutI CAGTG 5 cut(s) 231, 345, 390, 648, 915
Cfr13I GGNCC 1 cut(s) 851
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 976
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 3 cut(s) 382, 966, 1002
DpnI GATC 7 cut(s) 89, 158, 201, 662, 719, 760, 798
DpnII GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
DraIII CACNNNGTG 1 cut(s) 805
Eam1104I CTCTTC 1 cut(s) 838
EarI CTCTTC 1 cut(s) 838
Eco130I CCWWGG 1 cut(s) 754
Eco47I GGWCC 1 cut(s) 851
Eco88I CYCGRG 1 cut(s) 400
EcoO109I RGGNCCY 1 cut(s) 851
EcoRI GAATTC 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 754
ErhI CCWWGG 1 cut(s) 754
FaeI CATG 1 cut(s) 979
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FatI CATG 1 cut(s) 975
FbaI TGATCA 3 cut(s) 199, 717, 796
Fnu4HI GCNGC 3 cut(s) 269, 369, 925
Fsp4HI GCNGC 3 cut(s) 269, 369, 925
FspBI CTAG 3 cut(s) 596, 708, 954
GluI GCNGC 3 cut(s) 269, 369, 925
GsuI CTGGAG 1 cut(s) 552
HapII CCGG 2 cut(s) 35, 115
Hin1II CATG 1 cut(s) 979
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 230, 948
HinfI GANTC 3 cut(s) 16, 730, 893
HpaI GTTAAC 1 cut(s) 141
HpaII CCGG 2 cut(s) 35, 115
HphI GGTGA 1 cut(s) 971
Hpy166II GTNNAC 3 cut(s) 141, 379, 468
Hpy188I TCNGA 2 cut(s) 294, 492
Hpy188III TCNNGA 2 cut(s) 569, 954
Hpy8I GTNNAC 3 cut(s) 141, 379, 468
HpyAV CCTTC 4 cut(s) 556, 619, 779, 842
HpyCH4III ACNGT 6 cut(s) 53, 103, 226, 349, 985, 991
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 7 cut(s) 268, 323, 442, 486, 540, 645, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 3 cut(s) 382, 966, 1002
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 1 cut(s) 979
Ksp22I TGATCA 3 cut(s) 199, 717, 796
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
LguI GCTCTTC 1 cut(s) 838
LmnI GCTCC 3 cut(s) 37, 587, 692
LpnPI CCDG 8 cut(s) 5, 48, 128, 177, 348, 582, 669, 719
Lsp1109I GCAGC 3 cut(s) 280, 380, 911
LweI GCATC 1 cut(s) 988
MaeI CTAG 3 cut(s) 596, 708, 954
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 3 cut(s) 53, 880, 985
MalI GATC 7 cut(s) 89, 158, 201, 662, 719, 760, 798
MboI GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
MboII GAAGA 6 cut(s) 251, 457, 515, 686, 820, 825
MflI RGATCY 1 cut(s) 87
MluCI AATT 3 cut(s) 62, 108, 296
MnlI CCTC 6 cut(s) 82, 396, 447, 831, 864, 950
MroXI GAANNNNTTC 1 cut(s) 102
MseI TTAA 3 cut(s) 92, 134, 140
MspA1I CMGCKG 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 91
MspI CCGG 2 cut(s) 35, 115
Mva1269I GAATGC 1 cut(s) 486
MvnI CGCG 1 cut(s) 632
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
NlaIII CATG 1 cut(s) 979
NmeAIII GCCGAG 2 cut(s) 537, 953
NmuCI GTSAC 2 cut(s) 53, 880
NspV TTCGAA 1 cut(s) 106
PaeR7I CTCGAG 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 838
PctI GAATGC 1 cut(s) 486
PdmI GAANNNNTTC 1 cut(s) 102
PfeI GAWTC 3 cut(s) 16, 730, 893
PkrI GCNGC 3 cut(s) 270, 370, 926
PpuMI RGGWCCY 1 cut(s) 851
PsiI TTATAA 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 851
PspPI GGNCC 1 cut(s) 851
PspPPI RGGWCCY 1 cut(s) 851
PspXI VCTCGAGB 1 cut(s) 400
PstI CTGCAG 1 cut(s) 542
PsuI RGATCY 1 cut(s) 87
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SapI GCTCTTC 1 cut(s) 838
SaqAI TTAA 3 cut(s) 92, 134, 140
SatI GCNGC 3 cut(s) 269, 369, 925
Sau3AI GATC 7 cut(s) 87, 156, 199, 660, 717, 758, 796
Sau96I GGNCC 1 cut(s) 851
SfaNI GCATC 1 cut(s) 988
SfcI CTRYAG 2 cut(s) 538, 615
Sfr274I CTCGAG 1 cut(s) 400
SfuI TTCGAA 1 cut(s) 106
SinI GGWCC 1 cut(s) 851
SlaI CTCGAG 1 cut(s) 400
SmlI CTYRAG 2 cut(s) 91, 400
SmoI CTYRAG 2 cut(s) 91, 400
Sse9I AATT 3 cut(s) 62, 108, 296
SspMI CTAG 3 cut(s) 596, 708, 954
StyI CCWWGG 1 cut(s) 754
TaaI ACNGT 6 cut(s) 53, 103, 226, 349, 985, 991
TaiI ACGT 1 cut(s) 477
TaqI TCGA 4 cut(s) 106, 401, 836, 896
TasI AATT 3 cut(s) 62, 108, 296
TfiI GAWTC 3 cut(s) 16, 730, 893
Tru1I TTAA 3 cut(s) 92, 134, 140
Tru9I TTAA 3 cut(s) 92, 134, 140
TscAI CASTG 5 cut(s) 231, 352, 390, 655, 915
TseFI GTSAC 2 cut(s) 53, 880
TseI GCWGC 3 cut(s) 268, 368, 924
Tsp45I GTSAC 2 cut(s) 53, 880
TspGWI ACGGA 2 cut(s) 23, 43
TspRI CASTG 5 cut(s) 231, 352, 390, 655, 915
Vha464I CTTAAG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 851
XapI RAATTY 2 cut(s) 108, 296
XbaI TCTAGA 1 cut(s) 953
XhoI CTCGAG 1 cut(s) 400
XmnI GAANNNNTTC 1 cut(s) 102
XspI CTAG 3 cut(s) 596, 708, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.