Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011883

Physical Location & Seq

Genomic Coordinates Reverse (-)

28368920 .. 28370081

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G280100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGGAAGCTTATACTGAAAATTCCCCAAGAATGAGATTGGATCATTCAAAGAAAGAGGGATCCGAAGAAACCCATTTGTTGAGATTTGAGTTAGAACCTACTGGTAACGATCATAGGTTCCATTCAATGAATGCTCTGGAGATTTTGAGGGAAACTGTGAGAATTCTCCGGTACAATTCGTGGGGCTTTTTGGCCATTGCCGCCTTGCTAATTTGCCCTTTGTCTGCCTTGCTTTTGTCGAATTTGCTGGTTGATCAGTCACTTGTAAAGAGACTAACGATTAGGATGTTGTTAATTGCCAAGTCCAGTGGCCTCCCTTTGAGGGATTTTATCAGTCATTCTTGCCAGAGGTTTGCTGAGATGGCTATCTCATCCACTATGTGCTTTCCTCTGTACATCACATTGTCTTTGTTGTCGAAAGCCGCCGTGGTTTACTCTGTGTATTGTAGTTACTCCCTGAAGAAGTTTGATGTATCCCAGTTTTACTTAATTATGTGCAAAATATGGAGACGGCTTCTTTCGACGTATGTGTGGATGTGTATGGTGGTTGTGGGTTGCCTCATCTTGTTTTTGATTCTTCTTCTTGCTGTGTGCAATACATGTTCCATATTTGGGTTGTCACCTCCTCATATTGTATATGCTGCAATGGTGGTTGGCCTCATCTTCTCGGTTATTTTTGCCAATGCTATTATTATTTGCAACATTGCTATTGTGATCTCTGTGTTGGAGGATGTCTCAGGACCAGAGGCATTGGTTCAGTCTGGGGTTTTAATCAAGGGCCAGACTCAGGTGGGTCTTTTGATATTTCTTGGATCAACAATCGGAATGGCATTTGTTGAGGGGCTGTTTGAGCACAGAGTGAAGACGTTGAGCTACGGAGATGGGTCTTCTCGCATATGGGAAGGGCCTCTTTTGGTGATCATGTATTCGTTCGTGGTGCTCATCGACTCCATGATGAGTGCTGTTTTCTACTTCAGCTGCAGATCTTTTAAGATGGAAACATCTTTAGACAGCGAGTCTCATTCAATTTTGGAAACCATAAACTTTTCTGCTGAATCAGTTGGTATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

358

Amino Acids

39.92

Weight (kDa)

6.7

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011883)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26650 AT1G69430
fragaria_vesca	FvH4_5g29140
malus_domestica	MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica	Prupe.1G280100_v2.0.a1
pyrus_communis	pycom13g05980 pycom16g05820
rosa_chinensis	RchiOBHm_Chr7g0221801
rosa_laevigata	RLG00000002121
rosa_multiflora	Rmu_sc0004505.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237700
rosa_rugosa	Rorug07G0203500
rosa_samantha	Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana	Rw7G029210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	201, 423
AclWI	GGATC	4 cut(s)	48, 54, 67, 820
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	3 cut(s)	19, 162, 241
AcuI	CTGAAG	2 cut(s)	479, 958
AdeI	CACNNNGTG	2 cut(s)	381, 859
AfaI	GTAC	2 cut(s)	173, 395
AfiI	CCNNNNNNNGG	3 cut(s)	322, 612, 787
AflIII	ACRYGT	1 cut(s)	599
AgsI	TTSAA	4 cut(s)	48, 126, 1026, 1070
AhdI	GACNNNNNGTC	1 cut(s)	1015
AluBI	AGCT	3 cut(s)	8, 873, 978
AluI	AGCT	3 cut(s)	8, 873, 978
Alw21I	GWGCWC	2 cut(s)	855, 942
Alw26I	GTCTC	4 cut(s)	265, 502, 739, 1023
AlwI	GGATC	4 cut(s)	48, 54, 67, 820
AoxI	GGCC	5 cut(s)	192, 310, 655, 778, 905
ApeKI	GCWGC	2 cut(s)	641, 978
ApoI	RAATTY	3 cut(s)	19, 162, 241
AspS9I	GGNCC	3 cut(s)	740, 778, 905
AsuHPI	GGTGA	2 cut(s)	612, 928
AvaII	GGWCC	1 cut(s)	740
BalI	TGGCCA	1 cut(s)	194
BamHI	GGATCC	1 cut(s)	59
BbsI	GAAGAC	2 cut(s)	869, 879
Bbv12I	GWGCWC	2 cut(s)	855, 942
BbvI	GCAGC	2 cut(s)	628, 965
BccI	CCATC	3 cut(s)	355, 875, 988
BceAI	ACGGC	2 cut(s)	410, 527
BciVI	GTATCC	1 cut(s)	484
BclI	TGATCA	2 cut(s)	253, 918
BcoDI	GTCTC	4 cut(s)	265, 502, 739, 1023
BfmI	CTRYAG	1 cut(s)	979
BfuI	GTATCC	1 cut(s)	484
BglII	AGATCT	1 cut(s)	983
BisI	GCNGC	4 cut(s)	201, 423, 642, 979
BlsI	GCNGC	4 cut(s)	202, 424, 643, 980
Bme18I	GGWCC	1 cut(s)	740
BmeRI	GACNNNNNGTC	1 cut(s)	1015
BmgT120I	GGNCC	3 cut(s)	740, 778, 905
BmiI	GGNNCC	2 cut(s)	61, 119
BmrI	ACTGGG	1 cut(s)	472
BmuI	ACTGGG	1 cut(s)	472
BpiI	GAAGAC	2 cut(s)	869, 879
BplI	GAGNNNNNCTC	2 cut(s)	719, 751
BpmI	CTGGAG	1 cut(s)	158
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	426
BsaWI	WCCGGW	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	3 cut(s)	322, 612, 787
Bse1I	ACTGG	3 cut(s)	106, 306, 478
Bse3DI	GCAATG	3 cut(s)	195, 651, 702
Bse8I	GATNNNNATC	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	4 cut(s)	291, 371, 540, 736
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	3 cut(s)	322, 612, 787
BseMI	GCAATG	3 cut(s)	195, 651, 702
BseMII	CTCAG	3 cut(s)	348, 750, 800
BseNI	ACTGG	3 cut(s)	106, 306, 478
BseRI	GAGGAG	1 cut(s)	615
BseXI	GCAGC	2 cut(s)	628, 965
BshFI	GGCC	5 cut(s)	194, 312, 657, 780, 907
BsiHKAI	GWGCWC	2 cut(s)	855, 942
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	3 cut(s)	322, 612, 787
BsmAI	GTCTC	4 cut(s)	265, 502, 739, 1023
BsmBI	CGTCTC	1 cut(s)	502
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	5 cut(s)	194, 312, 657, 780, 907
Bsp1286I	GDGCHC	2 cut(s)	855, 942
Bsp1407I	TGTACA	1 cut(s)	393
Bsp143I	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
BspACI	CCGC	2 cut(s)	201, 423
BspANI	GGCC	5 cut(s)	194, 312, 657, 780, 907
BspCNI	CTCAG	3 cut(s)	349, 749, 799
BspLI	GGNNCC	2 cut(s)	61, 119
BspMAI	CTGCAG	1 cut(s)	983
BspPI	GGATC	4 cut(s)	48, 54, 67, 820
BsrDI	GCAATG	3 cut(s)	195, 651, 702
BsrGI	TGTACA	1 cut(s)	393
BsrI	ACTGG	3 cut(s)	106, 306, 478
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
Bst4CI	ACNGT	1 cut(s)	157
BstAUI	TGTACA	1 cut(s)	393
BstDEI	CTNAG	3 cut(s)	357, 736, 786
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	291, 371, 540, 736
BstKTI	GATC	8 cut(s)	43, 62, 112, 256, 717, 815, 921, 986
BstMAI	GTCTC	4 cut(s)	265, 502, 739, 1023
BstMBI	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 362, 850
BstNSI	RCATGY	1 cut(s)	603
BstSFI	CTRYAG	1 cut(s)	979
BstV1I	GCAGC	2 cut(s)	628, 965
BstV2I	GAAGAC	2 cut(s)	869, 879
BstX2I	RGATCY	2 cut(s)	59, 983
BstYI	RGATCY	2 cut(s)	59, 983
BsuI	GTATCC	1 cut(s)	484
BsuRI	GGCC	5 cut(s)	194, 312, 657, 780, 907
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	4 cut(s)	291, 371, 540, 736
BtsIMutI	CAGTG	1 cut(s)	313
Cfr13I	GGNCC	3 cut(s)	740, 778, 905
Csp6I	GTAC	2 cut(s)	172, 394
CspCI	CAANNNNNGTGG	2 cut(s)	289, 324
CviAII	CATG	3 cut(s)	600, 922, 952
CviQI	GTAC	2 cut(s)	172, 394
DdeI	CTNAG	3 cut(s)	357, 736, 786
DpnI	GATC	8 cut(s)	42, 61, 111, 255, 716, 814, 920, 985
DpnII	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
DraIII	CACNNNGTG	2 cut(s)	381, 859
DriI	GACNNNNNGTC	1 cut(s)	1015
EaeI	YGGCCR	1 cut(s)	192
Eam1105I	GACNNNNNGTC	1 cut(s)	1015
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	2 cut(s)	479, 958
EcoO109I	RGGNCCY	1 cut(s)	905
EcoRI	GAATTC	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	502
FaeI	CATG	3 cut(s)	603, 925, 955
FalI	AAGNNNNNCTT	2 cut(s)	894, 926
FatI	CATG	3 cut(s)	599, 921, 951
FauNDI	CATATG	1 cut(s)	896
FbaI	TGATCA	2 cut(s)	253, 918
Fnu4HI	GCNGC	4 cut(s)	201, 423, 642, 979
FokI	GGATG	4 cut(s)	298, 358, 547, 743
Fsp4HI	GCNGC	4 cut(s)	201, 423, 642, 979
GluI	GCNGC	4 cut(s)	201, 423, 642, 979
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	5 cut(s)	194, 312, 657, 780, 907
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	3 cut(s)	603, 925, 955
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	5 cut(s)	574, 784, 947, 1016, 1055
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	2 cut(s)	612, 928
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	64, 824
Hpy188III	TCNNGA	2 cut(s)	137, 738
Hpy8I	GTNNAC	1 cut(s)	433
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	1 cut(s)	896
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	2 cut(s)	524, 866
HpyCH4V	TGCA	5 cut(s)	498, 594, 644, 699, 981
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 362, 850
HpyF3I	CTNAG	3 cut(s)	357, 736, 786
HpySE526I	ACGT	2 cut(s)	524, 866
Hsp92II	CATG	3 cut(s)	603, 925, 955
Ksp22I	TGATCA	2 cut(s)	253, 918
Kzo9I	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
Lsp1109I	GCAGC	2 cut(s)	628, 965
MaeII	ACGT	2 cut(s)	524, 866
MaeIII	GTNAC	4 cut(s)	104, 258, 449, 618
MalI	GATC	8 cut(s)	42, 61, 111, 255, 716, 814, 920, 985
MboI	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
MboII	GAAGA	7 cut(s)	77, 472, 569, 572, 655, 874, 879
MflI	RGATCY	2 cut(s)	59, 983
MhlI	GDGCHC	2 cut(s)	855, 942
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	8 cut(s)	19, 162, 175, 210, 241, 294, 489, 1026
MluNI	TGGCCA	1 cut(s)	194
MlyI	GAGTC	3 cut(s)	778, 941, 1025
MmeI	TCCRAC	1 cut(s)	705
Mox20I	TGGCCA	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	4 cut(s)	293, 488, 770, 990
Msp20I	TGGCCA	1 cut(s)	194
MspA1I	CMGCKG	1 cut(s)	978
MspI	CCGG	1 cut(s)	169
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	200, 362, 850
NdeI	CATATG	1 cut(s)	896
NdeII	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
NlaIII	CATG	3 cut(s)	603, 925, 955
NlaIV	GGNNCC	2 cut(s)	61, 119
NmuCI	GTSAC	2 cut(s)	258, 618
NspI	RCATGY	1 cut(s)	603
PciI	ACATGT	1 cut(s)	599
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	574, 1055
PkrI	GCNGC	4 cut(s)	202, 424, 643, 980
PleI	GAGTC	3 cut(s)	778, 941, 1024
PpsI	GAGTC	3 cut(s)	778, 941, 1024
PscI	ACATGT	1 cut(s)	599
PspN4I	GGNNCC	2 cut(s)	61, 119
PspPI	GGNCC	3 cut(s)	740, 778, 905
PstI	CTGCAG	1 cut(s)	983
PsuI	RGATCY	2 cut(s)	59, 983
PvuII	CAGCTG	1 cut(s)	978
RsaI	GTAC	2 cut(s)	173, 395
RsaNI	GTAC	2 cut(s)	172, 394
SaqAI	TTAA	4 cut(s)	293, 488, 770, 990
SatI	GCNGC	4 cut(s)	201, 423, 642, 979
Sau3AI	GATC	8 cut(s)	40, 59, 109, 253, 714, 812, 918, 983
Sau96I	GGNCC	3 cut(s)	740, 778, 905
SchI	GAGTC	3 cut(s)	778, 941, 1025
SduI	GDGCHC	2 cut(s)	855, 942
SfcI	CTRYAG	1 cut(s)	979
SinI	GGWCC	1 cut(s)	740
Sse9I	AATT	8 cut(s)	19, 162, 175, 210, 241, 294, 489, 1026
SsiI	CCGC	2 cut(s)	201, 423
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	2 cut(s)	527, 869
TaqI	TCGA	4 cut(s)	239, 416, 521, 945
TasI	AATT	8 cut(s)	19, 162, 175, 210, 241, 294, 489, 1026
TatI	WGTACW	1 cut(s)	393
TauI	GCSGC	2 cut(s)	203, 425
TfiI	GAWTC	2 cut(s)	574, 1055
Tru1I	TTAA	4 cut(s)	293, 488, 770, 990
Tru9I	TTAA	4 cut(s)	293, 488, 770, 990
TscAI	CASTG	1 cut(s)	313
TseFI	GTSAC	2 cut(s)	258, 618
TseI	GCWGC	2 cut(s)	641, 978
Tsp45I	GTSAC	2 cut(s)	258, 618
TspDTI	ATGAA	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	740
XapI	RAATTY	3 cut(s)	19, 162, 241
XceI	RCATGY	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.