Rh7DG342200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011883
Physical Location & Seq
Forward (+)
45208450 .. 45210591
2142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG342200.1

Sequence Viewer

Length: 1092 bp
ATGGAAGCGTACAGTGAAAGTTCCCCCAAAATGAGAATAGATCATGCCACTAAACAAGGATCCGAACAAGAACAAACCCATTTGGCAGGATTGGAGTTAGACCCTGAGCCATCTGGTCACAATCATCATAGGTTCCACTCAATGAACGCCCTAGAAATCTTGAGGGAAACGGTACGGATTCTCCGCTTCAATTCGTGGGGTTTTTTGGCTATTGCTACCTTATTAATCTGCCCGGTGTCTGCCGCCGTGCTTTTGTCGAATATGCTAGTTGATCACTCACTTGTAAAGAGACTAACTGTTAGGATGTTACTAATTGCCAAGTCCAGTGGACTCCCCTTGAGGCCTTTCATCAGCCACTCGTGCCAGAAGTTTGCTGAGACGGCTATCTCCTCCGCTATGTGCTTTCCTTTGTACCTCACATTGTCCTTGTTGTCGAAAGCCGCGCTTGTTTACTCTGTGTATTGGAGTTATTCGCTCAAGAAGTTTGATGCCTCCAAGTTTTACTTGATTATGTGCAAAATATGGAGGCGGCTTGTTTCTACGTACGTGTGGATGTGTATGGTTGTTGCTGGTTGCCTCGCCTTGTTTTTGATTGTTCTTCTTGCAGTGTGCAACACATGTTCTATATTTGGGCTGTCGCCTCAGCTTATCATATATGCCGCAATGGTGGTTGGGCTTATCTTCTCGGTTGTTTTTGCTAATGCTATTATTATTTGCAACATTGCAATTGTGATATGTGTTTTGGAGGATGTCTCGGGACCAGAGGCATTGGTTCAGTCTGGGGCTTTGATCAGGGGCCAGACTCAGGTGGGTCTGCTCATATTTCTTGGATCCACATTTGGAATGGCTTTTGTTGAGGGCTTGTTTGAGCATAGAGTGAAGACATTGAGCTATGGCGATGGGTCTTCTCGCATATGGGAAGGGCCTCTTTTGGTGGTTATGTATTCATTTGTAGTGCTTATCGACTCTATGATGAGTGCTGTTTTCTACTTCAGTTGCAGATCTTTTAGGATGGAAACATCTTTAGAAGGTGAATCTCATTCAATTTTGGAAACGATAACCTTTTCTGCTGAATCAGTCGGTATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.22

Weight (kDa)

7.11

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 443
AciI CCGC 6 cut(s) 184, 243, 393, 441, 529, 660
AclWI GGATC 4 cut(s) 54, 67, 825, 838
AcuI CTGAAG 1 cut(s) 976
AfaI GTAC 4 cut(s) 11, 174, 413, 545
AfiI CCNNNNNNNGG 1 cut(s) 805
AflIII ACRYGT 2 cut(s) 546, 617
AgsI TTSAA 3 cut(s) 190, 1044, 1088
AluBI AGCT 2 cut(s) 646, 891
AluI AGCT 2 cut(s) 646, 891
Alw26I GTCTC 3 cut(s) 283, 371, 757
AlwI GGATC 4 cut(s) 54, 67, 825, 838
Ama87I CYCGRG 1 cut(s) 754
AoxI GGCC 3 cut(s) 341, 796, 923
AseI ATTAAT 1 cut(s) 224
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 3 cut(s) 758, 796, 923
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 1043
AvaI CYCGRG 1 cut(s) 754
AvaII GGWCC 1 cut(s) 758
BamHI GGATCC 2 cut(s) 59, 830
BauI CACGAG 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 887, 897
BbvCI CCTCAGC 1 cut(s) 642
BccI CCATC 3 cut(s) 118, 893, 1006
BceAI ACGGC 2 cut(s) 230, 396
BclI TGATCA 2 cut(s) 271, 789
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 283, 371, 757
BfaI CTAG 2 cut(s) 152, 266
BglII AGATCT 1 cut(s) 1001
BisI GCNGC 4 cut(s) 243, 441, 530, 660
BlsI GCNGC 4 cut(s) 244, 442, 531, 661
Bme1390I CCNGG 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 758
BmeT110I CYCGRG 1 cut(s) 754
BmgT120I GGNCC 3 cut(s) 758, 796, 923
BmiI GGNNCC 5 cut(s) 61, 134, 759, 797, 832
BmrFI CCNGG 1 cut(s) 233
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 887, 897
BplI GAGNNNNNCTC 2 cut(s) 737, 769
Bpu10I CCTNAGC 2 cut(s) 105, 642
BpuEI CTTGAG 3 cut(s) 181, 358, 461
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 2 cut(s) 543, 547
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 805
Bse1I ACTGG 1 cut(s) 324
Bse3DI GCAATG 2 cut(s) 669, 720
BseGI GGATG 4 cut(s) 309, 558, 754, 1017
BseLI CCNNNNNNNGG 1 cut(s) 805
BseMI GCAATG 2 cut(s) 669, 720
BseMII CTCAG 4 cut(s) 96, 366, 656, 818
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 443
BshFI GGCC 3 cut(s) 343, 798, 925
BsiHKCI CYCGRG 1 cut(s) 754
BsiSI CCGG 1 cut(s) 233
BsiWI CGTACG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 1 cut(s) 805
BsmAI GTCTC 3 cut(s) 283, 371, 757
BsmBI CGTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 3 cut(s) 343, 798, 925
BsoBI CYCGRG 1 cut(s) 754
Bsp143I GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
BspACI CCGC 6 cut(s) 184, 243, 393, 441, 529, 660
BspANI GGCC 3 cut(s) 343, 798, 925
BspCNI CTCAG 4 cut(s) 97, 367, 655, 817
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 5 cut(s) 61, 134, 759, 797, 832
BspPI GGATC 4 cut(s) 54, 67, 825, 838
BsrDI GCAATG 2 cut(s) 669, 720
BsrI ACTGG 1 cut(s) 324
BssMI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst4CI ACNGT 3 cut(s) 14, 172, 298
BstBAI YACGTR 2 cut(s) 543, 547
BstDEI CTNAG 4 cut(s) 105, 375, 642, 804
BstF5I GGATG 4 cut(s) 309, 558, 754, 1017
BstFNI CGCG 1 cut(s) 443
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 6 cut(s) 43, 62, 274, 792, 833, 1004
BstMAI GTCTC 3 cut(s) 283, 371, 757
BstMBI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
BstMWI GCNNNNNNNGC 2 cut(s) 360, 380
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 1 cut(s) 231
BstSNI TACGTA 1 cut(s) 543
BstUI CGCG 1 cut(s) 443
BstV2I GAAGAC 2 cut(s) 887, 897
BstX2I RGATCY 3 cut(s) 59, 830, 1001
BstYI RGATCY 3 cut(s) 59, 830, 1001
BsuRI GGCC 3 cut(s) 343, 798, 925
BtgZI GCGATG 1 cut(s) 912
BtsCI GGATG 4 cut(s) 309, 558, 754, 1017
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 3 cut(s) 19, 331, 612
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 3 cut(s) 758, 796, 923
Csp6I GTAC 4 cut(s) 10, 173, 412, 544
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 2 cut(s) 44, 618
CviQI GTAC 4 cut(s) 10, 173, 412, 544
DdeI CTNAG 4 cut(s) 105, 375, 642, 804
DpnI GATC 6 cut(s) 42, 61, 273, 791, 832, 1003
DpnII GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
Eco105I TACGTA 1 cut(s) 543
Eco147I AGGCCT 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 1 cut(s) 976
Eco88I CYCGRG 1 cut(s) 754
EcoO109I RGGNCCY 1 cut(s) 923
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 2 cut(s) 47, 621
FalI AAGNNNNNCTT 6 cut(s) 429, 461, 488, 520, 912, 944
FaqI GGGAC 1 cut(s) 771
FatI CATG 2 cut(s) 43, 617
FauNDI CATATG 1 cut(s) 914
FbaI TGATCA 2 cut(s) 271, 789
Fnu4HI GCNGC 4 cut(s) 243, 441, 530, 660
FokI GGATG 4 cut(s) 316, 565, 761, 1024
Fsp4HI GCNGC 4 cut(s) 243, 441, 530, 660
FspBI CTAG 2 cut(s) 152, 266
GlaI GCGC 1 cut(s) 444
GluI GCNGC 4 cut(s) 243, 441, 530, 660
HaeIII GGCC 3 cut(s) 343, 798, 925
HapII CCGG 1 cut(s) 233
HhaI GCGC 1 cut(s) 445
Hin1II CATG 2 cut(s) 47, 621
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HinfI GANTC 6 cut(s) 178, 330, 802, 965, 1034, 1073
HpaII CCGG 1 cut(s) 233
HphI GGTGA 1 cut(s) 1043
Hpy166II GTNNAC 2 cut(s) 329, 451
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 3 cut(s) 160, 478, 756
Hpy8I GTNNAC 2 cut(s) 329, 451
HpyAV CCTTC 2 cut(s) 914, 1022
HpyCH4III ACNGT 3 cut(s) 14, 172, 298
HpyCH4IV ACGT 2 cut(s) 542, 546
HpyCH4V TGCA 6 cut(s) 516, 605, 612, 717, 725, 999
HpyF10VI GCNNNNNNNGC 2 cut(s) 360, 380
HpyF3I CTNAG 4 cut(s) 105, 375, 642, 804
HpySE526I ACGT 2 cut(s) 542, 546
Hsp92II CATG 2 cut(s) 47, 621
HspAI GCGC 1 cut(s) 443
Ksp22I TGATCA 2 cut(s) 271, 789
Kzo9I GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
LweI GCATC 1 cut(s) 478
MaeI CTAG 2 cut(s) 152, 266
MaeII ACGT 2 cut(s) 542, 546
MaeIII GTNAC 2 cut(s) 116, 306
MalI GATC 6 cut(s) 42, 61, 273, 791, 832, 1003
MboI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
MboII GAAGA 4 cut(s) 590, 673, 892, 897
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 3 cut(s) 59, 830, 1001
MluCI AATT 4 cut(s) 190, 312, 726, 1044
MlyI GAGTC 3 cut(s) 324, 796, 959
MseI TTAA 1 cut(s) 224
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 1 cut(s) 233
MunI CAATTG 1 cut(s) 726
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 2 cut(s) 360, 380
NciI CCSGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 914
NdeII GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
NlaIII CATG 2 cut(s) 47, 621
NlaIV GGNNCC 5 cut(s) 61, 134, 759, 797, 832
NmuCI GTSAC 1 cut(s) 116
NspI RCATGY 1 cut(s) 621
PceI AGGCCT 1 cut(s) 343
PciI ACATGT 1 cut(s) 617
PfeI GAWTC 3 cut(s) 178, 1034, 1073
Pfl23II CGTACG 1 cut(s) 543
PkrI GCNGC 4 cut(s) 244, 442, 531, 661
PleI GAGTC 3 cut(s) 324, 796, 959
PpsI GAGTC 3 cut(s) 324, 796, 959
Ppu21I YACGTR 2 cut(s) 543, 547
PscI ACATGT 1 cut(s) 617
PshBI ATTAAT 1 cut(s) 224
PspLI CGTACG 1 cut(s) 543
PspN4I GGNNCC 5 cut(s) 61, 134, 759, 797, 832
PspPI GGNCC 3 cut(s) 758, 796, 923
PsuI RGATCY 3 cut(s) 59, 830, 1001
RsaI GTAC 4 cut(s) 11, 174, 413, 545
RsaNI GTAC 4 cut(s) 10, 173, 412, 544
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 4 cut(s) 243, 441, 530, 660
Sau3AI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
Sau96I GGNCC 3 cut(s) 758, 796, 923
SchI GAGTC 3 cut(s) 324, 796, 959
ScrFI CCNGG 1 cut(s) 233
SfaNI GCATC 1 cut(s) 478
SinI GGWCC 1 cut(s) 758
SmlI CTYRAG 3 cut(s) 160, 337, 476
SmoI CTYRAG 3 cut(s) 160, 337, 476
SnaBI TACGTA 1 cut(s) 543
Sse9I AATT 4 cut(s) 190, 312, 726, 1044
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 6 cut(s) 184, 243, 393, 441, 529, 660
SspMI CTAG 2 cut(s) 152, 266
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 231
TaaI ACNGT 3 cut(s) 14, 172, 298
TaiI ACGT 2 cut(s) 545, 549
TaqI TCGA 3 cut(s) 257, 434, 963
TasI AATT 4 cut(s) 190, 312, 726, 1044
TauI GCSGC 4 cut(s) 245, 443, 532, 662
TfiI GAWTC 3 cut(s) 178, 1034, 1073
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 3 cut(s) 19, 331, 612
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 158, 337, 936
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 3 cut(s) 19, 331, 612
VpaK11BI GGWCC 1 cut(s) 758
VspI ATTAAT 1 cut(s) 224
XceI RCATGY 1 cut(s) 621
XcmI CCANNNNNNNNNTGG 1 cut(s) 841
XspI CTAG 2 cut(s) 152, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.