Rorug07G0203500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011883
Physical Location & Seq
Forward (+)
17811020 .. 17813175
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0203500.1

Sequence Viewer

Length: 516 bp
ATGGATTCAGAATCTGAAACGAATCCTTCATGGTGGTATGACTATGAGCCCTTTATTAACATGACTGAAGATCTAAATGATGAACAATCAGGAAACAACGAAACCCAAATTATTGAAGCACATGATGAGGCTTTAAACGCTGTGCCGGCAATGGGGTGTTGTTGGATTTGCAAATATATCACCAAGCGAGCAACTGAGCGATTATCTAATTCTCCAAAGAAGAATCTAAAGAGAGTTGCAGACGTTGCACAGCCACAAGCAGCTAAGCTGCAGCGTATTTCAGAAACAGACCACCCCACCAAATCGACGGAGAGCGTTCAAGTACCTGAGACTGAGGAGGCTTCCAAGGAAGCTGAGTCTGTTGCACTTATGGCAGAGACAGATAGGCTGAGTGCGATCGATACGGCGCAGCAGCTGCAAAAAAATGGAAGTAGGATCCGCAACGATGGAGATGTCGACCATCCTATATATTCTGAATTGCCGGAAATTACTGCTCTGCCCAGCTCGAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.15

Weight (kDa)

4.63

Isoelectric Point (pI)

57.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 456
AciI CCGC 1 cut(s) 439
AclWI GGATC 2 cut(s) 430, 443
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 2 cut(s) 116, 320
AluBI AGCT 5 cut(s) 263, 268, 353, 415, 504
AluI AGCT 5 cut(s) 263, 268, 353, 415, 504
Alw26I GTCTC 2 cut(s) 323, 371
AlwI GGATC 2 cut(s) 430, 443
AlwNI CAGNNNCTG 2 cut(s) 14, 415
ApeKI GCWGC 6 cut(s) 260, 268, 271, 409, 412, 415
AspLEI GCGC 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 172
BamHI GGATCC 1 cut(s) 435
BanII GRGCYC 1 cut(s) 51
BbvI GCAGC 6 cut(s) 255, 272, 283, 402, 421, 424
BccI CCATC 2 cut(s) 440, 468
BceAI ACGGC 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 323, 371
BfmI CTRYAG 1 cut(s) 269
BglII AGATCT 1 cut(s) 70
BisI GCNGC 6 cut(s) 261, 269, 272, 410, 413, 416
BlpI GCTNAGC 1 cut(s) 264
BlsI GCNGC 6 cut(s) 262, 270, 273, 411, 414, 417
BmiI GGNNCC 1 cut(s) 437
Bpu1102I GCTNAGC 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 399
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 156
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 1 cut(s) 152
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 5 cut(s) 186, 318, 324, 345, 380
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 6 cut(s) 255, 272, 283, 402, 421, 424
BseYI CCCAGC 1 cut(s) 500
Bsh1285I CGRYCG 1 cut(s) 399
BshVI ATCGAT 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 399
BsiSI CCGG 2 cut(s) 146, 482
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 2 cut(s) 323, 371
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 3 cut(s) 70, 396, 435
Bsp1720I GCTNAGC 1 cut(s) 264
BspACI CCGC 1 cut(s) 439
BspCNI CTCAG 5 cut(s) 187, 319, 325, 346, 381
BspDI ATCGAT 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 437
BspMAI CTGCAG 1 cut(s) 273
BspPI GGATC 2 cut(s) 430, 443
BsrDI GCAATG 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 145
BssAI RCCGGY 1 cut(s) 145
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 3 cut(s) 70, 396, 435
BssT1I CCWWGG 1 cut(s) 345
BstAPI GCANNNNNTGC 2 cut(s) 245, 415
BstC8I GCNNGC 2 cut(s) 147, 189
BstDEI CTNAG 6 cut(s) 195, 264, 327, 333, 354, 389
BstF5I GGATG 1 cut(s) 460
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 73, 399, 438
BstMAI GTCTC 2 cut(s) 323, 371
BstMBI GATC 3 cut(s) 70, 396, 435
BstMCI CGRYCG 1 cut(s) 399
BstMWI GCNNNNNNNGC 5 cut(s) 137, 146, 245, 371, 415
BstSFI CTRYAG 1 cut(s) 269
BstV1I GCAGC 6 cut(s) 255, 272, 283, 402, 421, 424
BstX2I RGATCY 2 cut(s) 70, 435
BstYI RGATCY 2 cut(s) 70, 435
Bsu15I ATCGAT 1 cut(s) 399
BsuTUI ATCGAT 1 cut(s) 399
BtsCI GGATG 1 cut(s) 460
Cac8I GCNNGC 2 cut(s) 147, 189
CaiI CAGNNNCTG 2 cut(s) 14, 415
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 1 cut(s) 145
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 30, 61, 122
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 6 cut(s) 195, 264, 327, 333, 354, 389
DpnI GATC 3 cut(s) 72, 398, 437
DpnII GATC 3 cut(s) 70, 396, 435
DraI TTTAAA 1 cut(s) 135
Eco130I CCWWGG 1 cut(s) 345
Eco24I GRGCYC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 33, 64, 125
FaiI YATR 9 cut(s) 31, 39, 45, 62, 123, 177, 371, 467, 469
FatI CATG 3 cut(s) 29, 60, 121
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 6 cut(s) 261, 269, 272, 410, 413, 416
FokI GGATG 1 cut(s) 447
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 6 cut(s) 261, 269, 272, 410, 413, 416
GlaI GCGC 1 cut(s) 408
GluI GCNGC 6 cut(s) 261, 269, 272, 410, 413, 416
GsaI CCCAGC 1 cut(s) 504
HapII CCGG 2 cut(s) 146, 482
HhaI GCGC 1 cut(s) 409
Hin1II CATG 3 cut(s) 33, 64, 125
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HinfI GANTC 5 cut(s) 5, 11, 22, 223, 356
HpaII CCGG 2 cut(s) 146, 482
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 4 cut(s) 10, 16, 283, 475
Hpy188III TCNNGA 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 36
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 6 cut(s) 171, 239, 248, 271, 365, 418
HpyF10VI GCNNNNNNNGC 5 cut(s) 137, 146, 245, 371, 415
HpyF3I CTNAG 6 cut(s) 195, 264, 327, 333, 354, 389
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 3 cut(s) 33, 64, 125
HspAI GCGC 1 cut(s) 407
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
Kzo9I GATC 3 cut(s) 70, 396, 435
LpnPI CCDG 4 cut(s) 75, 159, 339, 495
Lsp1109I GCAGC 6 cut(s) 255, 272, 283, 402, 421, 424
MaeII ACGT 1 cut(s) 243
MalI GATC 3 cut(s) 72, 398, 437
MboI GATC 3 cut(s) 70, 396, 435
MboII GAAGA 2 cut(s) 80, 232
MflI RGATCY 2 cut(s) 70, 435
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 4 cut(s) 108, 208, 476, 486
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 3 cut(s) 121, 328, 331
MroNI GCCGGC 1 cut(s) 145
MseI TTAA 2 cut(s) 57, 134
MspA1I CMGCKG 1 cut(s) 415
MspI CCGG 2 cut(s) 146, 482
MwoI GCNNNNNNNGC 5 cut(s) 137, 146, 245, 371, 415
NaeI GCCGGC 1 cut(s) 147
NdeII GATC 3 cut(s) 70, 396, 435
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 3 cut(s) 33, 64, 125
NlaIV GGNNCC 1 cut(s) 437
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 4 cut(s) 5, 11, 22, 223
PkrI GCNGC 6 cut(s) 262, 270, 273, 411, 414, 417
Ple19I CGATCG 1 cut(s) 399
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspFI CCCAGC 1 cut(s) 500
PspN4I GGNNCC 1 cut(s) 437
PstI CTGCAG 1 cut(s) 273
PstNI CAGNNNCTG 2 cut(s) 14, 415
PsuI RGATCY 2 cut(s) 70, 435
PvuI CGATCG 1 cut(s) 399
PvuII CAGCTG 1 cut(s) 415
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SalI GTCGAC 1 cut(s) 455
SaqAI TTAA 2 cut(s) 57, 134
SatI GCNGC 6 cut(s) 261, 269, 272, 410, 413, 416
Sau3AI GATC 3 cut(s) 70, 396, 435
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 51
SetI ASST 7 cut(s) 246, 265, 270, 328, 355, 417, 506
SfcI CTRYAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 108, 208, 476, 486
SsiI CCGC 1 cut(s) 439
StyI CCWWGG 1 cut(s) 345
TaiI ACGT 1 cut(s) 246
TaqI TCGA 4 cut(s) 305, 399, 456, 506
TasI AATT 4 cut(s) 108, 208, 476, 486
TfiI GAWTC 4 cut(s) 5, 11, 22, 223
Tru1I TTAA 2 cut(s) 57, 134
Tru9I TTAA 2 cut(s) 57, 134
TseI GCWGC 6 cut(s) 260, 268, 271, 409, 412, 415
TspDTI ATGAA 2 cut(s) 18, 96
TspGWI ACGGA 1 cut(s) 323
XmiI GTMKAC 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.