pycom13g05980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0011883
Physical Location & Seq
Forward (+)
3930382 .. 3931449
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05980.1

Sequence Viewer

Length: 1068 bp
ATGGAAGCTGAAAGTTCACCAAGAATGAGATTGGATCACTCGAAAAAAGAGGGATCCGAAGAACCCCATTTGCGTAGATTTGAGTTAGATCTCTCTGGGATCGATCATAGATTTCATTCGATGAGTGCTCTGGAGATTTTGAGGGAAACTGTTAGAATTCTCCGGTACAATTCGTGGGGGTTTTTGGCGATTGCCATGTTGCTAATCTGCCCAATTTCCGCTGTGCTTTTGTCGAATTTGCTAGTTGATCAGTCACTTGTAAAGAGACTAACCATTAGGATGCTGTTAATTGCAAAGTCCAGTGGGCTCCCTTTGAGGGATTTTATCAGTCACTCTTGCCAGAAGTTTGCTGAGATGGCTATCTCGTGTACAATGTGCTTTCCCTTGTACATCACATTGTCATTGTTGTCGAAGGCCGCGGTGGTTTACTCCGTGTATTGTAGTTACTCCCTGAAGAAGTTTGATGCATCCCAGTTTTACTTTGTTATGTGCAAGATATGGAGGCGGGTTGTTTCAACTTATATATGGATGTGTATGGTGGTTGCTGGTAGCGTCGTCTTGTTTTTGGTCCTTCTTCTTGCTGTGTGCAATGCATGTTCGATAGTGGGGTTGTCGCCAAATTATATTGTGTATGCTGCAATGGTGGTTGGGCTCCCCTTCTCGGTCGTTTTTGCCAATGCCATTATTATTTGCAACATTGCTATTGTGATCTCTGTGTTGGAGGATGTCTCTGGACCAGAGGCATTGGTTCAGTCTGGGGTTTTGATCAAGGGACAAACTCAGGTGGGGCTTCTGATATTTCTTGGATCGAGTATTGGAATGGCGTTTGTTGAGGGATTGTTTGAGCATAGGGTGAAGACTTTGAGCTACGGAGACGGGTCTTCACGCATTTGGGAAGGGCCTCTTTTGGTGATCATGTATTCGTTTGTGGTGCTTATCGACTCCATGAACAGTGCAGTTTTCTACTTCAGTTGCAGATCTTTGAAGATGGAAACATCTTTGGATGGTGAATCTCATTCGATTTTGGAAACAATAACCTTTTCTACTGAATCAGTTGGCATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

39.41

Weight (kDa)

7.02

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 419
AciI CCGC 4 cut(s) 219, 417, 419, 505
AclWI GGATC 5 cut(s) 42, 48, 61, 107, 814
AcsI RAATTY 2 cut(s) 156, 235
AcuI CTGAAG 2 cut(s) 473, 952
AfaI GTAC 3 cut(s) 167, 370, 389
AfiI CCNNNNNNNGG 2 cut(s) 316, 661
AgsI TTSAA 3 cut(s) 516, 985, 1064
AluBI AGCT 2 cut(s) 8, 867
AluI AGCT 2 cut(s) 8, 867
Alw21I GWGCWC 1 cut(s) 130
Alw26I GTCTC 3 cut(s) 259, 733, 867
AlwI GGATC 5 cut(s) 42, 48, 61, 107, 814
AoxI GGCC 2 cut(s) 414, 899
ApeKI GCWGC 1 cut(s) 635
ApoI RAATTY 2 cut(s) 156, 235
AspS9I GGNCC 3 cut(s) 568, 734, 899
AsuHPI GGTGA 4 cut(s) 9, 865, 922, 1019
AvaII GGWCC 2 cut(s) 568, 734
BamHI GGATCC 1 cut(s) 53
BanII GRGCYC 2 cut(s) 309, 654
BauI CACGAG 1 cut(s) 364
BbsI GAAGAC 2 cut(s) 863, 873
Bbv12I GWGCWC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 622
BccI CCATC 3 cut(s) 349, 982, 998
BclI TGATCA 3 cut(s) 247, 765, 912
BcoDI GTCTC 3 cut(s) 259, 733, 867
BfaI CTAG 1 cut(s) 242
BglII AGATCT 2 cut(s) 88, 977
BisI GCNGC 2 cut(s) 417, 636
BlsI GCNGC 2 cut(s) 418, 637
Bme18I GGWCC 2 cut(s) 568, 734
BmgT120I GGNCC 3 cut(s) 568, 734, 899
BmiI GGNNCC 3 cut(s) 55, 308, 653
BmrI ACTGGG 1 cut(s) 466
BmsI GCATC 3 cut(s) 270, 454, 476
BmuI ACTGGG 1 cut(s) 466
BpiI GAAGAC 2 cut(s) 863, 873
BplI GAGNNNNNCTC 2 cut(s) 713, 745
BpmI CTGGAG 1 cut(s) 152
Bsa29I ATCGAT 1 cut(s) 102
BsaBI GATNNNNATC 1 cut(s) 359
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 661
Bse1I ACTGG 2 cut(s) 300, 472
Bse3DI GCAATG 3 cut(s) 595, 645, 696
Bse8I GATNNNNATC 1 cut(s) 359
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 5 cut(s) 285, 467, 534, 730, 1009
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 316, 661
BseMI GCAATG 3 cut(s) 595, 645, 696
BseMII CTCAG 2 cut(s) 342, 794
BseNI ACTGG 2 cut(s) 300, 472
BseXI GCAGC 1 cut(s) 622
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 419
Bsh1285I CGRYCG 1 cut(s) 666
BshFI GGCC 2 cut(s) 416, 901
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 1 cut(s) 666
BsiHKAI GWGCWC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 163
BslFI GGGAC 1 cut(s) 786
BslI CCNNNNNNNGG 2 cut(s) 316, 661
BsmAI GTCTC 3 cut(s) 259, 733, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 786
BsmI GAATGC 1 cut(s) 1059
BsnI GGCC 2 cut(s) 416, 901
Bsp1286I GDGCHC 3 cut(s) 130, 309, 654
Bsp1407I TGTACA 2 cut(s) 368, 387
BspACI CCGC 4 cut(s) 219, 417, 419, 505
BspANI GGCC 2 cut(s) 416, 901
BspCNI CTCAG 2 cut(s) 343, 793
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 55, 308, 653
BspPI GGATC 5 cut(s) 42, 48, 61, 107, 814
BsrDI GCAATG 3 cut(s) 595, 645, 696
BsrGI TGTACA 2 cut(s) 368, 387
BsrI ACTGG 2 cut(s) 300, 472
BssECI CCNNGG 1 cut(s) 417
BssSI CACGAG 1 cut(s) 364
Bst2BI CACGAG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 151, 953
BstAUI TGTACA 2 cut(s) 368, 387
BstDEI CTNAG 2 cut(s) 351, 780
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 5 cut(s) 285, 467, 534, 730, 1009
BstFNI CGCG 1 cut(s) 419
BstMAI GTCTC 3 cut(s) 259, 733, 867
BstMCI CGRYCG 1 cut(s) 666
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 597
BstUI CGCG 1 cut(s) 419
BstV1I GCAGC 1 cut(s) 622
BstV2I GAAGAC 2 cut(s) 863, 873
BstX2I RGATCY 3 cut(s) 53, 88, 977
BstYI RGATCY 3 cut(s) 53, 88, 977
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 416, 901
BsuTUI ATCGAT 1 cut(s) 102
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 5 cut(s) 285, 467, 534, 730, 1009
BtsIMutI CAGTG 2 cut(s) 307, 958
Cfr13I GGNCC 3 cut(s) 568, 734, 899
Cfr42I CCGCGG 1 cut(s) 420
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 541
Csp6I GTAC 3 cut(s) 166, 369, 388
CviAII CATG 4 cut(s) 196, 594, 916, 946
CviJI RGCY 8 cut(s) 8, 307, 359, 416, 652, 790, 867, 901
CviKI_1 RGCY 8 cut(s) 8, 307, 359, 416, 652, 790, 867, 901
CviQI GTAC 3 cut(s) 166, 369, 388
DdeI CTNAG 2 cut(s) 351, 780
Eco24I GRGCYC 2 cut(s) 309, 654
Eco47I GGWCC 2 cut(s) 568, 734
Eco57I CTGAAG 2 cut(s) 473, 952
EcoO109I RGGNCCY 1 cut(s) 899
EcoRI GAATTC 1 cut(s) 156
EcoT22I ATGCAT 2 cut(s) 469, 595
EcoT38I GRGCYC 2 cut(s) 309, 654
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 4 cut(s) 199, 597, 919, 949
FalI AAGNNNNNCTT 2 cut(s) 888, 920
FaqI GGGAC 1 cut(s) 786
FatI CATG 4 cut(s) 195, 593, 915, 945
FauI CCCGC 1 cut(s) 498
FbaI TGATCA 3 cut(s) 247, 765, 912
Fnu4HI GCNGC 2 cut(s) 417, 636
FokI GGATG 5 cut(s) 292, 454, 541, 737, 1016
FriOI GRGCYC 2 cut(s) 309, 654
Fsp4HI GCNGC 2 cut(s) 417, 636
FspBI CTAG 1 cut(s) 242
GluI GCNGC 2 cut(s) 417, 636
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 416, 901
HapII CCGG 1 cut(s) 163
HgaI GACGC 1 cut(s) 541
Hin1II CATG 4 cut(s) 199, 597, 919, 949
HinfI GANTC 3 cut(s) 941, 1010, 1049
HpaII CCGG 1 cut(s) 163
HphI GGTGA 4 cut(s) 9, 865, 922, 1019
Hpy166II GTNNAC 3 cut(s) 17, 369, 427
Hpy188I TCNGA 2 cut(s) 58, 795
Hpy188III TCNNGA 2 cut(s) 131, 732
Hpy8I GTNNAC 3 cut(s) 17, 369, 427
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 406, 581, 667, 890
HpyCH4III ACNGT 2 cut(s) 151, 953
HpyCH4V TGCA 9 cut(s) 293, 467, 492, 588, 593, 638, 693, 956, 975
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 351, 780
Hsp92II CATG 4 cut(s) 199, 597, 919, 949
Ksp22I TGATCA 3 cut(s) 247, 765, 912
KspI CCGCGG 1 cut(s) 420
LmnI GCTCC 2 cut(s) 312, 657
Lsp1109I GCAGC 1 cut(s) 622
LweI GCATC 3 cut(s) 270, 454, 476
MaeI CTAG 1 cut(s) 242
MaeIII GTNAC 3 cut(s) 252, 329, 443
MboII GAAGA 6 cut(s) 71, 466, 566, 868, 873, 997
MflI RGATCY 3 cut(s) 53, 88, 977
MhlI GDGCHC 3 cut(s) 130, 309, 654
MluCI AATT 6 cut(s) 156, 169, 213, 235, 288, 619
MlyI GAGTC 1 cut(s) 935
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 8 cut(s) 43, 135, 309, 495, 715, 733, 826, 912
Mph1103I ATGCAT 2 cut(s) 469, 595
MseI TTAA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 278
MspA1I CMGCKG 2 cut(s) 221, 419
MspI CCGG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 1059
MvnI CGCG 1 cut(s) 419
MwoI GCNNNNNNNGC 1 cut(s) 356
NlaIII CATG 4 cut(s) 199, 597, 919, 949
NlaIV GGNNCC 3 cut(s) 55, 308, 653
NmuCI GTSAC 2 cut(s) 252, 329
NsiI ATGCAT 2 cut(s) 469, 595
NspI RCATGY 1 cut(s) 597
PctI GAATGC 1 cut(s) 1059
PfeI GAWTC 2 cut(s) 1010, 1049
PkrI GCNGC 2 cut(s) 418, 637
PleI GAGTC 1 cut(s) 935
PpsI GAGTC 1 cut(s) 935
PspN4I GGNNCC 3 cut(s) 55, 308, 653
PspPI GGNCC 3 cut(s) 568, 734, 899
PsuI RGATCY 3 cut(s) 53, 88, 977
RsaI GTAC 3 cut(s) 167, 370, 389
RsaNI GTAC 3 cut(s) 166, 369, 388
RseI CAYNNNNRTG 1 cut(s) 278
SacII CCGCGG 1 cut(s) 420
SaqAI TTAA 1 cut(s) 287
SatI GCNGC 2 cut(s) 417, 636
Sau96I GGNCC 3 cut(s) 568, 734, 899
SchI GAGTC 1 cut(s) 935
SduI GDGCHC 3 cut(s) 130, 309, 654
SetI ASST 4 cut(s) 10, 786, 869, 1040
SfaNI GCATC 3 cut(s) 270, 454, 476
Sfr303I CCGCGG 1 cut(s) 420
SgrBI CCGCGG 1 cut(s) 420
SinI GGWCC 2 cut(s) 568, 734
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse9I AATT 6 cut(s) 156, 169, 213, 235, 288, 619
SsiI CCGC 4 cut(s) 219, 417, 419, 505
SspMI CTAG 1 cut(s) 242
TaaI ACNGT 2 cut(s) 151, 953
TaqI TCGA 9 cut(s) 41, 102, 119, 233, 410, 599, 809, 939, 1019
TaqII GACCGA 1 cut(s) 652
TasI AATT 6 cut(s) 156, 169, 213, 235, 288, 619
TatI WGTACW 2 cut(s) 368, 387
TauI GCSGC 1 cut(s) 419
TfiI GAWTC 2 cut(s) 1010, 1049
Tru1I TTAA 1 cut(s) 287
Tru9I TTAA 1 cut(s) 287
TscAI CASTG 2 cut(s) 307, 958
TseFI GTSAC 2 cut(s) 252, 329
TseI GCWGC 1 cut(s) 635
Tsp45I GTSAC 2 cut(s) 252, 329
TspDTI ATGAA 2 cut(s) 104, 962
TspGWI ACGGA 2 cut(s) 421, 885
TspRI CASTG 2 cut(s) 307, 958
VpaK11BI GGWCC 2 cut(s) 568, 734
XapI RAATTY 2 cut(s) 156, 235
XceI RCATGY 1 cut(s) 597
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 2 cut(s) 469, 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.