RLG00000002121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011883
Physical Location & Seq
Reverse (-)
25881064 .. 25882143
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002121

Sequence Viewer

Length: 1080 bp
ATGGAGGCGTATGGTGAAAGTTCCCCAAAATTGAGATTAGATCATGCCACTAAACAAGGATCCGAACAAGAACCAGGATTGGAGTTAGAACCTGAGCCATCTGGTCACAATCATCATAGGTTCCACTCAATGAACGCCCTAGAAATCTTGAGGGAAACGGTTCGGATTCTCCGCTTCAATTCCTGGGGTTTTTTGGCTATTGCTACCTTATTAATCTGCCCGGTGTCTGCCGCCGTGCTTTTGTCGAATATGCTAGTTGATCACTCACTTGTAAAGAGACTAACTGTTAGGATGTTACTAATTGCCAAGTCCAGTGGACTCCCCTTGAGGCCTTTCATCAGCCACTCGTGCCAGAAGTTTGCTGAGACGGCTATCTCCTCCGCTATGTGCTTTCCTTTGTACATCACATTGTCCTTGTTGTCGAAAGCCGCGCTTGTTTACTCGGTGTATTGGAGTTATTCCCTCAACAAGTTTGATGCGTCCAAGTTTTACTTGATTATGTGCAAAATATGGAGGCGGCTTGTTTCTACGTATGTGTGGATGTGTATGGTGGTTGTTGGTTGCCTAGCCTTGTTTTTGATTGTTCTTCTTGCAGTGTGCAACACATGTTCTATATTTGGGTTGTCGCCTCAGCTTATCATATATGCCGCAATGGTGGTTGGGCTTATCTTCTCGGTTGTTTTTGCTAATGCTATTATTATTTGCAACATTGCAATTGTGATTTGTGTTTTGGAGGATGTCTCAGGACCAGAGGCATTGGTTCAGTCTGGGGCTTTGATCAGGGGCCAGACTCAGGTGGGTCTGCTCATATTTCTTGGATCCACATTTGGAATGGCTTTTGTTGAGGGCTTGTTTGAGCATAGAGTGAAGACGTTGAGCTATGGCGATGGGTCTTCTCGCATATGGGAAGGGCCTCTTTTAGTGGTTATGTATTCATTTGTAGTGCTTATTGACTCTATGATGAGTGCTGTTTTCTACTTCAGTTGCAGATCTTTTAGGATGGAAACATCTTTAGAAGGTGAATCTCATTCAATTTTGGAAACGATAACCTTTTCTGCTGAATCAGTCGGTATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

360

Amino Acids

39.75

Weight (kDa)

6.75

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 431
AciI CCGC 6 cut(s) 172, 231, 381, 429, 517, 648
AclWI GGATC 4 cut(s) 54, 67, 813, 826
AcuI CTGAAG 1 cut(s) 964
AfaI GTAC 1 cut(s) 401
AfiI CCNNNNNNNGG 1 cut(s) 793
AflIII ACRYGT 1 cut(s) 605
AgsI TTSAA 3 cut(s) 178, 1032, 1076
AjnI CCWGG 2 cut(s) 73, 182
AluBI AGCT 2 cut(s) 634, 879
AluI AGCT 2 cut(s) 634, 879
Alw26I GTCTC 3 cut(s) 271, 359, 745
AlwI GGATC 4 cut(s) 54, 67, 813, 826
AoxI GGCC 3 cut(s) 329, 784, 911
AseI ATTAAT 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 159
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 3 cut(s) 746, 784, 911
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 2 cut(s) 26, 1031
AvaII GGWCC 1 cut(s) 746
BamHI GGATCC 2 cut(s) 59, 818
BauI CACGAG 1 cut(s) 346
BbsI GAAGAC 2 cut(s) 875, 885
BbvCI CCTCAGC 1 cut(s) 630
BccI CCATC 3 cut(s) 106, 881, 994
BceAI ACGGC 2 cut(s) 218, 384
BciT130I CCWGG 2 cut(s) 75, 184
BclI TGATCA 2 cut(s) 259, 777
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 3 cut(s) 271, 359, 745
BfaI CTAG 3 cut(s) 140, 254, 566
BglII AGATCT 1 cut(s) 989
BisI GCNGC 4 cut(s) 231, 429, 518, 648
BlsI GCNGC 4 cut(s) 232, 430, 519, 649
Bme1390I CCNGG 3 cut(s) 75, 184, 221
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 3 cut(s) 746, 784, 911
BmiI GGNNCC 4 cut(s) 61, 122, 785, 820
BmrFI CCNGG 3 cut(s) 75, 184, 221
BmsI GCATC 1 cut(s) 466
BpiI GAAGAC 2 cut(s) 875, 885
BplI GAGNNNNNCTC 2 cut(s) 725, 757
Bpu10I CCTNAGC 2 cut(s) 93, 630
BpuEI CTTGAG 2 cut(s) 169, 346
BpuMI CCSGG 1 cut(s) 221
BsaAI YACGTR 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 793
Bse1I ACTGG 1 cut(s) 312
Bse3DI GCAATG 2 cut(s) 657, 708
BseBI CCWGG 2 cut(s) 75, 184
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 4 cut(s) 297, 546, 742, 1005
BseLI CCNNNNNNNGG 1 cut(s) 793
BseMI GCAATG 2 cut(s) 657, 708
BseMII CTCAG 5 cut(s) 84, 354, 644, 756, 806
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 367
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 3 cut(s) 331, 786, 913
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 793
BsmAI GTCTC 3 cut(s) 271, 359, 745
BsmBI CGTCTC 1 cut(s) 359
BsnI GGCC 3 cut(s) 331, 786, 913
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 6 cut(s) 40, 59, 259, 777, 818, 989
BspACI CCGC 6 cut(s) 172, 231, 381, 429, 517, 648
BspANI GGCC 3 cut(s) 331, 786, 913
BspCNI CTCAG 5 cut(s) 85, 355, 643, 755, 805
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 4 cut(s) 61, 122, 785, 820
BspPI GGATC 4 cut(s) 54, 67, 813, 826
BsrDI GCAATG 2 cut(s) 657, 708
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 6 cut(s) 40, 59, 259, 777, 818, 989
BssSI CACGAG 1 cut(s) 346
Bst2BI CACGAG 1 cut(s) 346
Bst2UI CCWGG 2 cut(s) 75, 184
Bst4CI ACNGT 2 cut(s) 160, 286
BstAUI TGTACA 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 531
BstDEI CTNAG 5 cut(s) 93, 363, 630, 742, 792
BstF5I GGATG 4 cut(s) 297, 546, 742, 1005
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 6 cut(s) 43, 62, 262, 780, 821, 992
BstMAI GTCTC 3 cut(s) 271, 359, 745
BstMBI GATC 6 cut(s) 40, 59, 259, 777, 818, 989
BstMWI GCNNNNNNNGC 2 cut(s) 348, 368
BstNI CCWGG 2 cut(s) 75, 184
BstNSI RCATGY 1 cut(s) 609
BstSCI CCNGG 3 cut(s) 73, 182, 219
BstSNI TACGTA 1 cut(s) 531
BstUI CGCG 1 cut(s) 431
BstV2I GAAGAC 2 cut(s) 875, 885
BstX2I RGATCY 3 cut(s) 59, 818, 989
BstYI RGATCY 3 cut(s) 59, 818, 989
BsuRI GGCC 3 cut(s) 331, 786, 913
BtgZI GCGATG 1 cut(s) 900
BtsCI GGATG 4 cut(s) 297, 546, 742, 1005
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 319, 600
CfoI GCGC 1 cut(s) 433
Cfr13I GGNCC 3 cut(s) 746, 784, 911
CseI GACGC 1 cut(s) 468
Csp6I GTAC 1 cut(s) 400
CspCI CAANNNNNGTGG 2 cut(s) 295, 330
CviAII CATG 2 cut(s) 44, 606
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 5 cut(s) 93, 363, 630, 742, 792
DpnI GATC 6 cut(s) 42, 61, 261, 779, 820, 991
DpnII GATC 6 cut(s) 40, 59, 259, 777, 818, 989
Eco105I TACGTA 1 cut(s) 531
Eco147I AGGCCT 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 746
Eco57I CTGAAG 1 cut(s) 964
EcoO109I RGGNCCY 1 cut(s) 911
EcoRII CCWGG 2 cut(s) 73, 182
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 2 cut(s) 47, 609
FalI AAGNNNNNCTT 6 cut(s) 417, 449, 476, 508, 900, 932
FatI CATG 2 cut(s) 43, 605
FauNDI CATATG 1 cut(s) 902
FbaI TGATCA 2 cut(s) 259, 777
Fnu4HI GCNGC 4 cut(s) 231, 429, 518, 648
FokI GGATG 4 cut(s) 304, 553, 749, 1012
Fsp4HI GCNGC 4 cut(s) 231, 429, 518, 648
FspBI CTAG 3 cut(s) 140, 254, 566
GlaI GCGC 1 cut(s) 432
GluI GCNGC 4 cut(s) 231, 429, 518, 648
HaeIII GGCC 3 cut(s) 331, 786, 913
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 468
HhaI GCGC 1 cut(s) 433
Hin1II CATG 2 cut(s) 47, 609
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HinfI GANTC 6 cut(s) 166, 318, 790, 953, 1022, 1061
HpaII CCGG 1 cut(s) 221
HphI GGTGA 2 cut(s) 26, 1031
Hpy166II GTNNAC 2 cut(s) 317, 439
Hpy188I TCNGA 2 cut(s) 64, 165
Hpy188III TCNNGA 2 cut(s) 148, 744
Hpy8I GTNNAC 2 cut(s) 317, 439
HpyAV CCTTC 2 cut(s) 902, 1010
HpyCH4III ACNGT 2 cut(s) 160, 286
HpyCH4IV ACGT 2 cut(s) 530, 872
HpyCH4V TGCA 6 cut(s) 504, 593, 600, 705, 713, 987
HpyF10VI GCNNNNNNNGC 2 cut(s) 348, 368
HpyF3I CTNAG 5 cut(s) 93, 363, 630, 742, 792
HpySE526I ACGT 2 cut(s) 530, 872
Hsp92II CATG 2 cut(s) 47, 609
HspAI GCGC 1 cut(s) 431
Ksp22I TGATCA 2 cut(s) 259, 777
Kzo9I GATC 6 cut(s) 40, 59, 259, 777, 818, 989
LweI GCATC 1 cut(s) 466
MaeI CTAG 3 cut(s) 140, 254, 566
MaeII ACGT 2 cut(s) 530, 872
MaeIII GTNAC 2 cut(s) 104, 294
MalI GATC 6 cut(s) 42, 61, 261, 779, 820, 991
MboI GATC 6 cut(s) 40, 59, 259, 777, 818, 989
MboII GAAGA 4 cut(s) 578, 661, 880, 885
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 3 cut(s) 59, 818, 989
MluCI AATT 5 cut(s) 29, 178, 300, 714, 1032
MlyI GAGTC 3 cut(s) 312, 784, 947
MroXI GAANNNNTTC 1 cut(s) 159
MseI TTAA 1 cut(s) 212
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 3 cut(s) 75, 184, 221
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 2 cut(s) 75, 184
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 2 cut(s) 348, 368
NciI CCSGG 1 cut(s) 221
NdeI CATATG 1 cut(s) 902
NdeII GATC 6 cut(s) 40, 59, 259, 777, 818, 989
NlaIII CATG 2 cut(s) 47, 609
NlaIV GGNNCC 4 cut(s) 61, 122, 785, 820
NmuCI GTSAC 1 cut(s) 104
NspI RCATGY 1 cut(s) 609
PceI AGGCCT 1 cut(s) 331
PciI ACATGT 1 cut(s) 605
PdmI GAANNNNTTC 1 cut(s) 159
PfeI GAWTC 3 cut(s) 166, 1022, 1061
PkrI GCNGC 4 cut(s) 232, 430, 519, 649
PleI GAGTC 3 cut(s) 312, 784, 947
PpsI GAGTC 3 cut(s) 312, 784, 947
Ppu21I YACGTR 1 cut(s) 531
PscI ACATGT 1 cut(s) 605
PshBI ATTAAT 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 73, 182
PspGI CCWGG 2 cut(s) 73, 182
PspN4I GGNNCC 4 cut(s) 61, 122, 785, 820
PspPI GGNCC 3 cut(s) 746, 784, 911
PsuI RGATCY 3 cut(s) 59, 818, 989
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 4 cut(s) 231, 429, 518, 648
Sau3AI GATC 6 cut(s) 40, 59, 259, 777, 818, 989
Sau96I GGNCC 3 cut(s) 746, 784, 911
SchI GAGTC 3 cut(s) 312, 784, 947
ScrFI CCNGG 3 cut(s) 75, 184, 221
SfaNI GCATC 1 cut(s) 466
SinI GGWCC 1 cut(s) 746
SmlI CTYRAG 2 cut(s) 148, 325
SmoI CTYRAG 2 cut(s) 148, 325
SnaBI TACGTA 1 cut(s) 531
Sse9I AATT 5 cut(s) 29, 178, 300, 714, 1032
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 6 cut(s) 172, 231, 381, 429, 517, 648
SspMI CTAG 3 cut(s) 140, 254, 566
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 3 cut(s) 73, 182, 219
TaaI ACNGT 2 cut(s) 160, 286
TaiI ACGT 2 cut(s) 533, 875
TaqI TCGA 2 cut(s) 245, 422
TasI AATT 5 cut(s) 29, 178, 300, 714, 1032
TatI WGTACW 1 cut(s) 399
TauI GCSGC 4 cut(s) 233, 431, 520, 650
TfiI GAWTC 3 cut(s) 166, 1022, 1061
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 2 cut(s) 319, 600
TseFI GTSAC 1 cut(s) 104
Tsp45I GTSAC 1 cut(s) 104
TspDTI ATGAA 3 cut(s) 146, 325, 924
TspRI CASTG 2 cut(s) 319, 600
VpaK11BI GGWCC 1 cut(s) 746
VspI ATTAAT 1 cut(s) 212
XceI RCATGY 1 cut(s) 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XmnI GAANNNNTTC 1 cut(s) 159
XspI CTAG 3 cut(s) 140, 254, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.