FvH4_5g29140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011883
Physical Location & Seq
Forward (+)
20208814 .. 20211120
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29140.t1

Sequence Viewer

Length: 1077 bp
ATGGAGACGTATAGTGGAAGTTCCCCAAAAAAGAGATTAGATCAAGGATCCAATACCCATTCCCTTTCCTCAGGATTTGAGTTAGAACCTGAGCCATCTGGTCACAATCATCATAGGTTTCACTCAATGAACGCCCTAGAAATCTTGAGGGAAACGGTTCGCATTCTCCGCTTTAATTCTTGGGGGTTTTTGGCAATTGCCATCTTGCTGATTAGCCCTGTGTCTGCCGCCATGCTTTTGTCCAATATGCTAGTTGATCACTCACTTGTAAAGAGACTAACTGTAAGGATGTTACTAATTGCCAAGTCCAGTGGACTCCCATTGAGGCCTTTCGTCAGTCACTCGTGCCAGAAGCTTGCCGAGACGGCTATCTCGTCCGCTATGTGCTTTCCTTTGTACATCACATTGTCCTTGTTGTCCAAAGCCGCGCTTGTGTACTCTGTGTATTGGAGCTATTCCCATAAGAAGTTTGACGCGTCCAAGTTTTACTTGGTCATGTGCAAAATATGGAGGCGGCTTGTTTCTACTTTTGTGTGGATGTGTATGGTGGTTGTTGGTTGCATCGCCTTGTTTTTGATGGTTCTTCTTGCAGTGTGCAATACATGTTCTGTATTTGGGTTGTCGCCTCAGCTTATCATATATGCCGCAATAATGGTTGGGCTTATCTTCTCGGTTGTTTTTGCTAATGCTATTATTATTTGCAACATTGCAATGGTGATATGTGTTTTGGAGGATGTCTCAGGACCAGAGGCATTGGTTCAGTCTGGAGCTTTAATCAGGGGGCAGACTCAGGTTGGTCTACTCATATTTCTTGGATCCACAGTTGGAATGGCTTTTGTTGAGGGCTTATTTGAGCATAGAGTGAAGACGCTGAGCTATGGTGATGGGTCTTCCCGCATATGGGAAGGGCCTCTTTTGGTGGTTATGTATTCATTTGTAGTGCTTATTGACTCTATGATGAATGCTGTTTTCTACTTCAGTTGCAGATCTTTTAGGATGGAAACATCTTTAGAAGGTGAATCTGATTCAATTATGGAAACGATGACTTTTTCTGCTGAATCAGTTGGTATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

359

Amino Acids

39.61

Weight (kDa)

8.02

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 799
AccII CGCG 2 cut(s) 428, 476
AciI CCGC 7 cut(s) 169, 228, 378, 426, 514, 645, 895
AclWI GGATC 4 cut(s) 42, 55, 810, 823
AcuI CTGAAG 1 cut(s) 961
AfaI GTAC 2 cut(s) 398, 437
AfiI CCNNNNNNNGG 2 cut(s) 900, 901
AflIII ACRYGT 2 cut(s) 474, 602
AgsI TTSAA 2 cut(s) 1029, 1073
AluBI AGCT 5 cut(s) 355, 453, 631, 770, 876
AluI AGCT 5 cut(s) 355, 453, 631, 770, 876
Alw26I GTCTC 3 cut(s) 268, 356, 742
AlwI GGATC 4 cut(s) 42, 55, 810, 823
AoxI GGCC 2 cut(s) 326, 908
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 1 cut(s) 430
AspS9I GGNCC 2 cut(s) 743, 908
AsuHPI GGTGA 3 cut(s) 727, 893, 1028
AvaII GGWCC 1 cut(s) 743
AxyI CCTNAGG 1 cut(s) 70
BamHI GGATCC 2 cut(s) 47, 815
BauI CACGAG 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 872, 882
BbvCI CCTCAGC 1 cut(s) 627
BccI CCATC 5 cut(s) 103, 209, 571, 878, 991
BceAI ACGGC 1 cut(s) 381
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 268, 356, 742
BfaI CTAG 2 cut(s) 137, 251
BglI GCCNNNNNGGC 1 cut(s) 365
BglII AGATCT 1 cut(s) 986
BisI GCNGC 4 cut(s) 228, 426, 515, 645
BlpI GCTNAGC 1 cut(s) 872
BlsI GCNGC 4 cut(s) 229, 427, 516, 646
Bme18I GGWCC 1 cut(s) 743
BmgT120I GGNCC 2 cut(s) 743, 908
BmiI GGNNCC 2 cut(s) 49, 817
BmsI GCATC 1 cut(s) 570
BpiI GAAGAC 2 cut(s) 872, 882
BplI GAGNNNNNCTC 2 cut(s) 722, 754
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 2 cut(s) 90, 627
Bpu1102I GCTNAGC 1 cut(s) 872
BpuEI CTTGAG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 2 cut(s) 900, 901
Bse1I ACTGG 1 cut(s) 309
Bse21I CCTNAGG 1 cut(s) 70
Bse3DI GCAATG 2 cut(s) 705, 717
BseGI GGATG 4 cut(s) 294, 543, 739, 1002
BseLI CCNNNNNNNGG 2 cut(s) 900, 901
BseMI GCAATG 2 cut(s) 705, 717
BseMII CTCAG 6 cut(s) 81, 84, 641, 753, 803, 863
BseNI ACTGG 1 cut(s) 309
Bsh1236I CGCG 2 cut(s) 428, 476
BshFI GGCC 2 cut(s) 328, 910
BslI CCNNNNNNNGG 2 cut(s) 900, 901
BsmAI GTCTC 3 cut(s) 268, 356, 742
BsmBI CGTCTC 1 cut(s) 356
BsmI GAATGC 2 cut(s) 162, 967
BsnI GGCC 2 cut(s) 328, 910
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 5 cut(s) 40, 47, 256, 815, 986
Bsp1720I GCTNAGC 1 cut(s) 872
BspACI CCGC 7 cut(s) 169, 228, 378, 426, 514, 645, 895
BspANI GGCC 2 cut(s) 328, 910
BspCNI CTCAG 6 cut(s) 82, 83, 640, 752, 802, 864
BspFNI CGCG 2 cut(s) 428, 476
BspLI GGNNCC 2 cut(s) 49, 817
BspPI GGATC 4 cut(s) 42, 55, 810, 823
BsrDI GCAATG 2 cut(s) 705, 717
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 1 cut(s) 309
BssMI GATC 5 cut(s) 40, 47, 256, 815, 986
BssSI CACGAG 1 cut(s) 343
Bst2BI CACGAG 1 cut(s) 343
Bst4CI ACNGT 3 cut(s) 157, 283, 823
BstAUI TGTACA 1 cut(s) 396
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 6 cut(s) 70, 90, 627, 739, 789, 872
BstF5I GGATG 4 cut(s) 294, 543, 739, 1002
BstFNI CGCG 2 cut(s) 428, 476
BstHHI GCGC 1 cut(s) 430
BstKTI GATC 5 cut(s) 43, 50, 259, 818, 989
BstMAI GTCTC 3 cut(s) 268, 356, 742
BstMBI GATC 5 cut(s) 40, 47, 256, 815, 986
BstMWI GCNNNNNNNGC 2 cut(s) 168, 365
BstNSI RCATGY 1 cut(s) 606
BstUI CGCG 2 cut(s) 428, 476
BstV2I GAAGAC 2 cut(s) 872, 882
BstX2I RGATCY 3 cut(s) 47, 815, 986
BstYI RGATCY 3 cut(s) 47, 815, 986
Bsu36I CCTNAGG 1 cut(s) 70
BsuRI GGCC 2 cut(s) 328, 910
BtgZI GCGATG 1 cut(s) 547
BtsCI GGATG 4 cut(s) 294, 543, 739, 1002
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 316, 597
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 1 cut(s) 430
Cfr13I GGNCC 2 cut(s) 743, 908
CseI GACGC 3 cut(s) 465, 482, 877
Csp6I GTAC 2 cut(s) 397, 436
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 3 cut(s) 232, 496, 603
CviQI GTAC 2 cut(s) 397, 436
DdeI CTNAG 6 cut(s) 70, 90, 627, 739, 789, 872
DpnI GATC 5 cut(s) 42, 49, 258, 817, 988
DpnII GATC 5 cut(s) 40, 47, 256, 815, 986
Eco147I AGGCCT 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 743
Eco57I CTGAAG 1 cut(s) 961
Eco81I CCTNAGG 1 cut(s) 70
EcoO109I RGGNCCY 1 cut(s) 908
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 3 cut(s) 235, 499, 606
FalI AAGNNNNNCTT 6 cut(s) 414, 446, 473, 505, 897, 929
FatI CATG 3 cut(s) 231, 495, 602
FauI CCCGC 1 cut(s) 902
FauNDI CATATG 1 cut(s) 899
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 228, 426, 515, 645
FokI GGATG 4 cut(s) 301, 550, 746, 1009
Fsp4HI GCNGC 4 cut(s) 228, 426, 515, 645
FspBI CTAG 2 cut(s) 137, 251
GlaI GCGC 1 cut(s) 429
GluI GCNGC 4 cut(s) 228, 426, 515, 645
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 2 cut(s) 328, 910
HgaI GACGC 3 cut(s) 465, 482, 877
HhaI GCGC 1 cut(s) 430
Hin1II CATG 3 cut(s) 235, 499, 606
Hin6I GCGC 1 cut(s) 428
HinP1I GCGC 1 cut(s) 428
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 315, 787, 950, 1019, 1025, 1058
HphI GGTGA 3 cut(s) 727, 893, 1028
Hpy166II GTNNAC 3 cut(s) 314, 436, 800
Hpy188I TCNGA 1 cut(s) 1024
Hpy188III TCNNGA 4 cut(s) 72, 145, 741, 765
Hpy8I GTNNAC 3 cut(s) 314, 436, 800
HpyAV CCTTC 2 cut(s) 899, 1007
HpyCH4III ACNGT 3 cut(s) 157, 283, 823
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 7 cut(s) 501, 561, 590, 597, 702, 710, 984
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 365
HpyF3I CTNAG 6 cut(s) 70, 90, 627, 739, 789, 872
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 3 cut(s) 235, 499, 606
HspAI GCGC 1 cut(s) 428
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 5 cut(s) 40, 47, 256, 815, 986
LmnI GCTCC 2 cut(s) 450, 767
LweI GCATC 1 cut(s) 570
MaeI CTAG 2 cut(s) 137, 251
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 3 cut(s) 101, 291, 338
MalI GATC 5 cut(s) 42, 49, 258, 817, 988
MboI GATC 5 cut(s) 40, 47, 256, 815, 986
MboII GAAGA 4 cut(s) 575, 658, 877, 882
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 3 cut(s) 47, 815, 986
MluCI AATT 4 cut(s) 175, 195, 297, 1029
MluI ACGCGT 1 cut(s) 474
MlyI GAGTC 3 cut(s) 309, 781, 944
MmeI TCCRAC 1 cut(s) 805
MnlI CCTC 9 cut(s) 79, 141, 318, 504, 636, 724, 742, 835, 921
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 174, 773
MslI CAYNNNNRTG 1 cut(s) 710
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 2 cut(s) 162, 967
MvnI CGCG 2 cut(s) 428, 476
MwoI GCNNNNNNNGC 2 cut(s) 168, 365
NdeI CATATG 1 cut(s) 899
NdeII GATC 5 cut(s) 40, 47, 256, 815, 986
NlaIII CATG 3 cut(s) 235, 499, 606
NlaIV GGNNCC 2 cut(s) 49, 817
NmeAIII GCCGAG 1 cut(s) 385
NmuCI GTSAC 2 cut(s) 101, 338
NspI RCATGY 1 cut(s) 606
PceI AGGCCT 1 cut(s) 328
PciI ACATGT 1 cut(s) 602
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PctI GAATGC 2 cut(s) 162, 967
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 1019, 1025, 1058
PkrI GCNGC 4 cut(s) 229, 427, 516, 646
PleI GAGTC 3 cut(s) 309, 781, 944
PpsI GAGTC 3 cut(s) 309, 781, 944
PscI ACATGT 1 cut(s) 602
PspN4I GGNNCC 2 cut(s) 49, 817
PspPI GGNCC 2 cut(s) 743, 908
PsuI RGATCY 3 cut(s) 47, 815, 986
RsaI GTAC 2 cut(s) 398, 437
RsaNI GTAC 2 cut(s) 397, 436
RseI CAYNNNNRTG 1 cut(s) 710
SaqAI TTAA 2 cut(s) 174, 773
SatI GCNGC 4 cut(s) 228, 426, 515, 645
Sau3AI GATC 5 cut(s) 40, 47, 256, 815, 986
Sau96I GGNCC 2 cut(s) 743, 908
SchI GAGTC 3 cut(s) 309, 781, 944
SfaNI GCATC 1 cut(s) 570
SinI GGWCC 1 cut(s) 743
SmiMI CAYNNNNRTG 1 cut(s) 710
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 4 cut(s) 175, 195, 297, 1029
SseBI AGGCCT 1 cut(s) 328
SsiI CCGC 7 cut(s) 169, 228, 378, 426, 514, 645, 895
SspMI CTAG 2 cut(s) 137, 251
StuI AGGCCT 1 cut(s) 328
TaaI ACNGT 3 cut(s) 157, 283, 823
TaiI ACGT 1 cut(s) 11
TasI AATT 4 cut(s) 175, 195, 297, 1029
TatI WGTACW 2 cut(s) 396, 435
TauI GCSGC 4 cut(s) 230, 428, 517, 647
TfiI GAWTC 3 cut(s) 1019, 1025, 1058
Tru1I TTAA 2 cut(s) 174, 773
Tru9I TTAA 2 cut(s) 174, 773
TscAI CASTG 2 cut(s) 316, 597
TseFI GTSAC 2 cut(s) 101, 338
Tsp45I GTSAC 2 cut(s) 101, 338
TspDTI ATGAA 3 cut(s) 143, 921, 974
TspRI CASTG 2 cut(s) 316, 597
VpaK11BI GGWCC 1 cut(s) 743
XceI RCATGY 1 cut(s) 606
XcmI CCANNNNNNNNNTGG 2 cut(s) 487, 826
XmiI GTMKAC 1 cut(s) 799
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 2 cut(s) 137, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.