pycom16g05820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011883
Physical Location & Seq
Forward (+)
3734776 .. 3736653
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g05820.5

Sequence Viewer

Length: 1332 bp
ATGTCCAAATTTTCGGAGCTCCCTCCTCCTCCTCCTCCTCCGCCTATCCCGCCGCAGAACCTCCGCGAAACGCCTCTCCATCGCCACCCCCAATGCTGCCTCCCAGCTTTCAAGGTACTGTACCGTCTGTATTCCGTGGCTTCTCAGATCTGTAGTGCCGGTAAAGCTTTTCGTCTCCGTTTGATCTTTAATTACAATCACATTTATATAGATATAGATATTAGATATATAGATATAAATACTAAAAAAATGGAAGCTGAAAGTTCACCCAGAATGAGATTGGATCACTCGAAAAAAGAGGGATCCGAAGAACCCCATTTGCGTAGATTCGAGTTAGAACTCTCCGGTAACGATCACAGGTTTCATTCGATGAGTGCTCTGGAAATTTTGAGAGAAACTGTTAGAATTCTCCGGTACAATTCGTGGGGGTTTTTGGCGATTGCCTTGTTGCTAATCTGCCCGGTTTCCGCCCTGCTTTTGTCGAATTTGGTAGTTGATCAGTCACTTGTAAAGAGACTAACCATTAGGATGTTGTTAATTGCAAAGTCCAGTGGACTCCCTTTGAGGGATTTTATCAGTCACTCTTGCCAAAAGTTTGCTGAGATGGCTATTTCGTGTACGATGTGCTTCCCCTTGTACATCACATTGTCGTTGTTGTCAAAAGCCGCGATGGTTTACTCTGTGTATTGTAGTTACTCCCTGAAGAAGTTTGATGCATCACAGTTTTACTTGGTTATGCGCAAGATATGGAGGCGGGTTGTTTCAACTTATGTGTGGATGTGTATGGTGGTAGCTGGTTGCGTCGTCTTGTTTTTGGTTCTTCTTCTTGCTGTGTGCAATGCATGTTCGATAGTAGGGTTGTCGCCGAATTATATTGTGTATGCTGCAATGGTGGTCGGGCTCGTCTTCTCGGTTGTTTTTGCCAATGCCGTTATTATTTGCAACATTGCTATTGTGATCTCTGTGTTGGAGGATGTCTCGGGACCAGAGGCATTGGTTCGGTCTGGGGTTCTGATCAAGGGCCAGACTCAGGTTGGTCTTCTGATATTTCTTGGGTCGAGTATTGGAATGGCATTCATCGAGGGATTGTTTGAGCATAGGGTGAAGACTTTGAGCTACGGAGATGGGTCTTCGCGCATTTGGGAAGGGCCTCTTTTGGTGATCATGTATTCGTTTGTGTTGCATCCCCTCCTGATTCTCTTCGATCTTTTAAGATGGAAACATCTTTGGATGGTGAATCTCATTCTGTTTTGGAAACGGTTAACTTTTCTTCTGAATCGGTTGGTATTCAATGACACCATCAACATAACCTATTTGTCACAATTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

444

Amino Acids

50.4

Weight (kDa)

9.27

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 740
AccII CGCG 3 cut(s) 66, 668, 1135
AciI CCGC 7 cut(s) 41, 50, 53, 64, 468, 666, 754
AclWI GGATC 3 cut(s) 291, 297, 310
AcsI RAATTY 4 cut(s) 8, 384, 405, 484
AcuI CTGAAG 1 cut(s) 722
AfaI GTAC 5 cut(s) 117, 122, 416, 619, 638
AfiI CCNNNNNNNGG 2 cut(s) 565, 1030
AgsI TTSAA 3 cut(s) 112, 765, 1291
AluBI AGCT 6 cut(s) 19, 107, 167, 257, 794, 1116
AluI AGCT 6 cut(s) 19, 107, 167, 257, 794, 1116
Alw21I GWGCWC 2 cut(s) 21, 379
Alw26I GTCTC 3 cut(s) 179, 508, 982
AlwI GGATC 3 cut(s) 291, 297, 310
Ama87I CYCGRG 1 cut(s) 979
AoxI GGCC 2 cut(s) 1021, 1148
ApeKI GCWGC 2 cut(s) 96, 884
ApoI RAATTY 4 cut(s) 8, 384, 405, 484
AspLEI GCGC 2 cut(s) 741, 1137
AspS9I GGNCC 3 cut(s) 983, 1021, 1148
AsuC2I CCSGG 1 cut(s) 461
AsuHPI GGTGA 4 cut(s) 258, 1114, 1171, 1246
AvaI CYCGRG 1 cut(s) 979
AvaII GGWCC 1 cut(s) 983
BamHI GGATCC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 21, 903
BbsI GAAGAC 4 cut(s) 898, 1031, 1112, 1122
Bbv12I GWGCWC 2 cut(s) 21, 379
BbvI GCAGC 2 cut(s) 83, 871
BccI CCATC 7 cut(s) 87, 598, 664, 1118, 1209, 1225, 1307
BceAI ACGGC 1 cut(s) 914
BclI TGATCA 3 cut(s) 496, 1014, 1161
BcnI CCSGG 1 cut(s) 461
BcoDI GTCTC 3 cut(s) 179, 508, 982
BfmI CTRYAG 1 cut(s) 151
BglII AGATCT 1 cut(s) 147
BisI GCNGC 4 cut(s) 53, 97, 666, 885
BlsI GCNGC 4 cut(s) 54, 98, 667, 886
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 983
BmeT110I CYCGRG 1 cut(s) 979
BmgT120I GGNCC 3 cut(s) 983, 1021, 1148
BmiI GGNNCC 2 cut(s) 304, 984
BmrFI CCNGG 1 cut(s) 461
BmsI GCATC 3 cut(s) 703, 725, 1192
BpiI GAAGAC 4 cut(s) 898, 1031, 1112, 1122
BplI GAGNNNNNCTC 2 cut(s) 962, 994
BpuMI CCSGG 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 135
BsaWI WCCGGW 2 cut(s) 344, 411
Bsc4I CCNNNNNNNGG 2 cut(s) 565, 1030
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 549
Bse3DI GCAATG 3 cut(s) 844, 894, 945
BseDI CCNNGG 1 cut(s) 135
BseGI GGATG 5 cut(s) 534, 783, 979, 1183, 1236
BseLI CCNNNNNNNGG 2 cut(s) 565, 1030
BseMI GCAATG 3 cut(s) 844, 894, 945
BseMII CTCAG 3 cut(s) 158, 591, 1043
BseNI ACTGG 1 cut(s) 549
BseRI GAGGAG 5 cut(s) 15, 18, 21, 24, 27
BseXI GCAGC 2 cut(s) 83, 871
BseYI CCCAGC 1 cut(s) 103
Bsh1236I CGCG 3 cut(s) 66, 668, 1135
BshFI GGCC 2 cut(s) 1023, 1150
BsiHKAI GWGCWC 2 cut(s) 21, 379
BsiHKCI CYCGRG 1 cut(s) 979
BsiSI CCGG 4 cut(s) 159, 345, 412, 461
BslFI GGGAC 1 cut(s) 996
BslI CCNNNNNNNGG 2 cut(s) 565, 1030
BsmAI GTCTC 3 cut(s) 179, 508, 982
BsmBI CGTCTC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 996
BsmI GAATGC 1 cut(s) 1073
BsnI GGCC 2 cut(s) 1023, 1150
BsoBI CYCGRG 1 cut(s) 979
Bsp1286I GDGCHC 3 cut(s) 21, 379, 903
Bsp1407I TGTACA 1 cut(s) 636
BspACI CCGC 7 cut(s) 41, 50, 53, 64, 468, 666, 754
BspANI GGCC 2 cut(s) 1023, 1150
BspCNI CTCAG 3 cut(s) 157, 592, 1042
BspFNI CGCG 3 cut(s) 66, 668, 1135
BspLI GGNNCC 2 cut(s) 304, 984
BspPI GGATC 3 cut(s) 291, 297, 310
BsrDI GCAATG 3 cut(s) 844, 894, 945
BsrFI RCCGGY 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 549
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 1 cut(s) 135
Bst4CI ACNGT 5 cut(s) 120, 125, 400, 723, 1260
Bst6I CTCTTC 1 cut(s) 1205
BstAUI TGTACA 1 cut(s) 636
BstDEI CTNAG 3 cut(s) 144, 600, 1029
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 5 cut(s) 534, 783, 979, 1183, 1236
BstFNI CGCG 3 cut(s) 66, 668, 1135
BstHHI GCGC 2 cut(s) 741, 1137
BstMAI GTCTC 3 cut(s) 179, 508, 982
BstMWI GCNNNNNNNGC 3 cut(s) 49, 164, 605
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 1 cut(s) 459
BstSFI CTRYAG 1 cut(s) 151
BstUI CGCG 3 cut(s) 66, 668, 1135
BstV1I GCAGC 2 cut(s) 83, 871
BstV2I GAAGAC 4 cut(s) 898, 1031, 1112, 1122
BstX2I RGATCY 2 cut(s) 147, 302
BstYI RGATCY 2 cut(s) 147, 302
BsuRI GGCC 2 cut(s) 1023, 1150
BtgI CCRYGG 1 cut(s) 135
BtgZI GCGATG 2 cut(s) 65, 683
BtsCI GGATG 5 cut(s) 534, 783, 979, 1183, 1236
BtsIMutI CAGTG 1 cut(s) 556
CfoI GCGC 2 cut(s) 741, 1137
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 983, 1021, 1148
CseI GACGC 1 cut(s) 790
Csp6I GTAC 5 cut(s) 116, 121, 415, 618, 637
CviAII CATG 2 cut(s) 843, 1165
CviQI GTAC 5 cut(s) 116, 121, 415, 618, 637
DdeI CTNAG 3 cut(s) 144, 600, 1029
Eam1104I CTCTTC 1 cut(s) 1205
EarI CTCTTC 1 cut(s) 1205
EciI GGCGGA 2 cut(s) 30, 457
Ecl136II GAGCTC 1 cut(s) 19
Eco24I GRGCYC 2 cut(s) 21, 903
Eco47I GGWCC 1 cut(s) 983
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 979
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 1 cut(s) 1148
EcoRI GAATTC 1 cut(s) 405
EcoT22I ATGCAT 2 cut(s) 718, 844
EcoT38I GRGCYC 2 cut(s) 21, 903
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 2 cut(s) 846, 1168
FalI AAGNNNNNCTT 2 cut(s) 1137, 1169
FaqI GGGAC 1 cut(s) 996
FatI CATG 2 cut(s) 842, 1164
FauI CCCGC 2 cut(s) 57, 747
FbaI TGATCA 3 cut(s) 496, 1014, 1161
Fnu4HI GCNGC 4 cut(s) 53, 97, 666, 885
FokI GGATG 5 cut(s) 541, 790, 986, 1170, 1243
FriOI GRGCYC 2 cut(s) 21, 903
Fsp4HI GCNGC 4 cut(s) 53, 97, 666, 885
FspI TGCGCA 1 cut(s) 740
GlaI GCGC 2 cut(s) 740, 1136
GluI GCNGC 4 cut(s) 53, 97, 666, 885
GsaI CCCAGC 1 cut(s) 107
HaeIII GGCC 2 cut(s) 1023, 1150
HapII CCGG 4 cut(s) 159, 345, 412, 461
HgaI GACGC 1 cut(s) 790
HhaI GCGC 2 cut(s) 741, 1137
Hin1II CATG 2 cut(s) 846, 1168
Hin6I GCGC 2 cut(s) 739, 1135
HinP1I GCGC 2 cut(s) 739, 1135
HincII GTYRAC 1 cut(s) 1263
HindII GTYRAC 1 cut(s) 1263
HindIII AAGCTT 1 cut(s) 165
HinfI GANTC 6 cut(s) 327, 555, 1027, 1195, 1237, 1276
HpaI GTTAAC 1 cut(s) 1263
HpaII CCGG 4 cut(s) 159, 345, 412, 461
HphI GGTGA 4 cut(s) 258, 1114, 1171, 1246
Hpy166II GTNNAC 5 cut(s) 266, 554, 618, 676, 1263
Hpy188I TCNGA 6 cut(s) 16, 147, 307, 1014, 1044, 1275
Hpy188III TCNNGA 3 cut(s) 380, 981, 1192
Hpy8I GTNNAC 5 cut(s) 266, 554, 618, 676, 1263
Hpy99I CGWCG 1 cut(s) 806
HpyAV CCTTC 1 cut(s) 1139
HpyCH4III ACNGT 5 cut(s) 120, 125, 400, 723, 1260
HpyCH4V TGCA 7 cut(s) 542, 716, 837, 842, 887, 942, 1183
HpyF10VI GCNNNNNNNGC 3 cut(s) 49, 164, 605
HpyF3I CTNAG 3 cut(s) 144, 600, 1029
Hsp92II CATG 2 cut(s) 846, 1168
HspAI GCGC 2 cut(s) 739, 1135
Ksp22I TGATCA 3 cut(s) 496, 1014, 1161
KspAI GTTAAC 1 cut(s) 1263
LmnI GCTCC 2 cut(s) 16, 24
Lsp1109I GCAGC 2 cut(s) 83, 871
LweI GCATC 3 cut(s) 703, 725, 1192
MaeIII GTNAC 5 cut(s) 347, 501, 578, 692, 1317
MflI RGATCY 2 cut(s) 147, 302
MhlI GDGCHC 3 cut(s) 21, 379, 903
MluCI AATT 9 cut(s) 8, 190, 384, 405, 418, 484, 537, 868, 1322
MlyI GAGTC 2 cut(s) 549, 1021
MmeI TCCRAC 1 cut(s) 948
Mph1103I ATGCAT 2 cut(s) 718, 844
MseI TTAA 4 cut(s) 189, 536, 1211, 1262
MslI CAYNNNNRTG 1 cut(s) 527
MspI CCGG 4 cut(s) 159, 345, 412, 461
MspR9I CCNGG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 1073
MvnI CGCG 3 cut(s) 66, 668, 1135
MwoI GCNNNNNNNGC 3 cut(s) 49, 164, 605
NciI CCSGG 1 cut(s) 461
NlaIII CATG 2 cut(s) 846, 1168
NlaIV GGNNCC 2 cut(s) 304, 984
NmuCI GTSAC 3 cut(s) 501, 578, 1317
NsbI TGCGCA 1 cut(s) 740
NsiI ATGCAT 2 cut(s) 718, 844
NspI RCATGY 1 cut(s) 846
PctI GAATGC 1 cut(s) 1073
PfeI GAWTC 4 cut(s) 327, 1195, 1237, 1276
PkrI GCNGC 4 cut(s) 54, 98, 667, 886
PleI GAGTC 2 cut(s) 549, 1021
PpsI GAGTC 2 cut(s) 549, 1021
Psp124BI GAGCTC 1 cut(s) 21
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 2 cut(s) 304, 984
PspPI GGNCC 3 cut(s) 983, 1021, 1148
PsuI RGATCY 2 cut(s) 147, 302
RsaI GTAC 5 cut(s) 117, 122, 416, 619, 638
RsaNI GTAC 5 cut(s) 116, 121, 415, 618, 637
RseI CAYNNNNRTG 1 cut(s) 527
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 4 cut(s) 189, 536, 1211, 1262
SatI GCNGC 4 cut(s) 53, 97, 666, 885
Sau96I GGNCC 3 cut(s) 983, 1021, 1148
SchI GAGTC 2 cut(s) 549, 1021
ScrFI CCNGG 1 cut(s) 461
SduI GDGCHC 3 cut(s) 21, 379, 903
SfaNI GCATC 3 cut(s) 703, 725, 1192
SfcI CTRYAG 1 cut(s) 151
SinI GGWCC 1 cut(s) 983
SmiMI CAYNNNNRTG 1 cut(s) 527
Sse9I AATT 9 cut(s) 8, 190, 384, 405, 418, 484, 537, 868, 1322
SsiI CCGC 7 cut(s) 41, 50, 53, 64, 468, 666, 754
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 1 cut(s) 459
TaaI ACNGT 5 cut(s) 120, 125, 400, 723, 1260
TaqI TCGA 8 cut(s) 290, 330, 368, 482, 848, 1058, 1080, 1203
TaqII GACCGA 1 cut(s) 990
TasI AATT 9 cut(s) 8, 190, 384, 405, 418, 484, 537, 868, 1322
TatI WGTACW 1 cut(s) 636
TauI GCSGC 2 cut(s) 55, 668
TfiI GAWTC 4 cut(s) 327, 1195, 1237, 1276
Tru1I TTAA 4 cut(s) 189, 536, 1211, 1262
Tru9I TTAA 4 cut(s) 189, 536, 1211, 1262
TscAI CASTG 1 cut(s) 556
TseFI GTSAC 3 cut(s) 501, 578, 1317
TseI GCWGC 2 cut(s) 96, 884
Tsp45I GTSAC 3 cut(s) 501, 578, 1317
TspDTI ATGAA 2 cut(s) 353, 1066
TspGWI ACGGA 3 cut(s) 124, 167, 1134
TspRI CASTG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 983
XapI RAATTY 4 cut(s) 8, 384, 405, 484
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 2 cut(s) 277, 1031
Zsp2I ATGCAT 2 cut(s) 718, 844
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.