MD05G1259900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011883
Physical Location & Seq
Reverse (-)
39534974 .. 39535576
603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1259900.v1.1.491

Sequence Viewer

Length: 516 bp
ATGAGTGCTCTGGAAATTTTGAGAGAAACTGTTAGAATTCTCCGGTACAATTTGTGGCGTTTTTTGGCGATTGCCTTGTTGCTAATCTGCCCGGTTTCCGCCCTGCTTTTGTCGAATTTGGTAGTTGATCAGTCACTTTTTGCTGAGATGGCTATTTCATGTACGATGCGCTTTCCCTTGTACATCACATTGTTGTTGTCAAAAGTTGCAGTGGTTTACTCTGTGTATTGTAGTTATTCCCTCAAGAAGTTTGATGCATCACAGTATTACTTGGTTATGCGCAAGATATGGAGACGGGTTGTTTCAACTTATGTGTGGATGTGTATGGTGGTTGCTAGTTGCATCGTCTTGTTTTTTGTTCTTCTTCTTGCTGTGTGCAATGCATGTTCGATAGTAGGGTTGTCGCCAAATTATATTGTGTATGCTGCAATGGTGGTTGCGCTTGCCTTCTCTGTTGTTTTTGCCAATGCTGTTATTATTTGCAACATTGCTATTGTTATTAATGCTGAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

19.24

Weight (kDa)

9.08

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 281
AciI CCGC 1 cut(s) 99
AcsI RAATTY 3 cut(s) 15, 36, 115
AfaI GTAC 3 cut(s) 47, 163, 182
AgsI TTSAA 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 3 cut(s) 15, 36, 115
AseI ATTAAT 1 cut(s) 501
AspLEI GCGC 3 cut(s) 171, 282, 442
AsuC2I CCSGG 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 10
BbvI GCAGC 1 cut(s) 412
BccI CCATC 1 cut(s) 142
BclI TGATCA 1 cut(s) 127
BcnI CCSGG 1 cut(s) 92
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 4 cut(s) 156, 244, 266, 351
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 92
BsaWI WCCGGW 1 cut(s) 42
Bse3DI GCAATG 3 cut(s) 385, 435, 486
BseGI GGATG 1 cut(s) 324
BseMI GCAATG 3 cut(s) 385, 435, 486
BseMII CTCAG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 412
BsiHKAI GWGCWC 1 cut(s) 10
BsiSI CCGG 2 cut(s) 43, 92
BsmAI GTCTC 1 cut(s) 286
BsmBI CGTCTC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 136
BsrDI GCAATG 3 cut(s) 385, 435, 486
BsrGI TGTACA 1 cut(s) 180
BssMI GATC 1 cut(s) 127
Bst4CI ACNGT 2 cut(s) 31, 264
BstAUI TGTACA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 324
BstHHI GCGC 3 cut(s) 171, 282, 442
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 324
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 444
CfoI GCGC 3 cut(s) 171, 282, 442
Csp6I GTAC 3 cut(s) 46, 162, 181
CviAII CATG 2 cut(s) 159, 384
CviJI RGCY 1 cut(s) 152
CviKI_1 RGCY 1 cut(s) 152
CviQI GTAC 3 cut(s) 46, 162, 181
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EciI GGCGGA 1 cut(s) 88
EcoRI GAATTC 1 cut(s) 36
EcoT22I ATGCAT 2 cut(s) 259, 385
Esp3I CGTCTC 1 cut(s) 286
FaeI CATG 2 cut(s) 162, 387
FaiI YATR 8 cut(s) 160, 278, 289, 312, 326, 385, 414, 423
FatI CATG 2 cut(s) 158, 383
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 426
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 426
FspBI CTAG 1 cut(s) 336
FspI TGCGCA 1 cut(s) 281
GlaI GCGC 3 cut(s) 170, 281, 441
GluI GCNGC 1 cut(s) 426
HapII CCGG 2 cut(s) 43, 92
HhaI GCGC 3 cut(s) 171, 282, 442
Hin1II CATG 2 cut(s) 162, 387
Hin6I GCGC 3 cut(s) 169, 280, 440
HinP1I GCGC 3 cut(s) 169, 280, 440
HpaII CCGG 2 cut(s) 43, 92
Hpy166II GTNNAC 1 cut(s) 217
Hpy188III TCNNGA 2 cut(s) 11, 244
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 2 cut(s) 31, 264
HpyCH4V TGCA 7 cut(s) 209, 257, 342, 378, 383, 428, 483
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 2 cut(s) 162, 387
HspAI GCGC 3 cut(s) 169, 280, 440
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 3 cut(s) 56, 105, 116
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 4 cut(s) 156, 244, 266, 351
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 132
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 2 cut(s) 353, 356
MhlI GDGCHC 1 cut(s) 10
MluCI AATT 5 cut(s) 15, 36, 49, 115, 409
MnlI CCTC 1 cut(s) 251
Mph1103I ATGCAT 2 cut(s) 259, 385
MseI TTAA 1 cut(s) 501
MspI CCGG 2 cut(s) 43, 92
MspR9I CCNGG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 92
NdeII GATC 1 cut(s) 127
NlaIII CATG 2 cut(s) 162, 387
NmuCI GTSAC 1 cut(s) 132
NsbI TGCGCA 1 cut(s) 281
NsiI ATGCAT 2 cut(s) 259, 385
NspI RCATGY 1 cut(s) 387
PkrI GCNGC 1 cut(s) 427
PshBI ATTAAT 1 cut(s) 501
RsaI GTAC 3 cut(s) 47, 163, 182
RsaNI GTAC 3 cut(s) 46, 162, 181
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 10
SfaNI GCATC 4 cut(s) 156, 244, 266, 351
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 5 cut(s) 15, 36, 49, 115, 409
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 90
TaaI ACNGT 2 cut(s) 31, 264
TaqI TCGA 2 cut(s) 113, 389
TasI AATT 5 cut(s) 15, 36, 49, 115, 409
TatI WGTACW 1 cut(s) 180
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 147
TspRI CASTG 1 cut(s) 216
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 3 cut(s) 15, 36, 115
XceI RCATGY 1 cut(s) 387
XspI CTAG 1 cut(s) 336
Zsp2I ATGCAT 2 cut(s) 259, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.