Rroxscaffold_3G00237700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0011883
Physical Location & Seq
Reverse (-)
25417640 .. 25419481
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237700.1

Sequence Viewer

Length: 1092 bp
ATGGAGGCGTATGGTGAAAGTTCTCCAAAATTGAGAATAGATCATGCCACTAAACAAGGATCCGAACAAGAACAAACCCATTTGGCAGGATTGGAGTTGGAACCTGAGCCATCTGGTCACAATCATCATAGGTTCCACTCAATGAACGCCCTGGAAATCTTGAGGGAAACGGTACGGATTCTCCGCTTCAATTCGTGGGGTTTTTTGGCTATTGCTACCTTATTAATCTGCCCGGTGTCTGCCGCCGTGCTTTTGTCGAATATGCTACTTGATCACTCACTTGTAAAGAGACTAACTGTTAGGATGTTACTAATTGCCAAGTCCAGTGGACTCCCCTTGAGGCCTTTCATCAGCCACTCGTGCCAGAAGTTTGCTGAGACGGCTATCTCCTCCGCTATGTGCTTTCCTCTGTACATCACATTGTCCTTGTTGTCGAAAGCCGCGCTTGTTTACTCGGTGTATTGGAGTTATTCCCTCAAGAAGTTTGATGCGTCCAAGTTTTACTTGATTATGTGCAAAATATGGAGGCGCCTTGTTTCTACGTATGTCTGGATGTGTATGGTGGTTGTTGGTTGCCTCGCCTTGTTTTTTATTGTTCTTCTTGCAGTGTGCAACTCATGTTCTATATTTGGGTTGTCGCCTCAGCTTATCATATATGCCGCAATGCTGGTTGGGCTTATCTTCTCGGTTGTTTTTGCTAATGCTATTATTATTTGCAACATTGCAATTGTGATATGTGTTTTGGAGGATGTCTCAGGACCAGAGGCACTGGTTCAGTCTGGGGCTTTGATCAGGGGCCAGACTCAGGTGGGTCTGCTCATATTTCTTGGATCCACATTTGGAATGGCTTTTGTTGAGGGCTTGTTTGAGCATAGAGTGAAGACGTTGAGCTATGGCGATGGGTCTTCTCGCATATGGGAAGGGCCTCTTTTGGTTGTTATGTATTCATTTGTAGTGCTTATCGACTCTATGATGAGTGCTGTTTTCTACTTCAGTTGCAGATCTTTTCGAATGGAAACATCTTTAGAAGGTGAATCTCATTCAATTTTGGAAACGATAACCTTTTCTGCTGAATCAGTCGGTATTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.26

Weight (kDa)

7.11

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 528
AccII CGCG 1 cut(s) 443
AciI CCGC 5 cut(s) 184, 243, 393, 441, 660
AclWI GGATC 4 cut(s) 54, 67, 825, 838
AcuI CTGAAG 1 cut(s) 976
AcyI GRCGYC 1 cut(s) 529
AfaI GTAC 2 cut(s) 174, 413
AfiI CCNNNNNNNGG 1 cut(s) 805
AgsI TTSAA 3 cut(s) 190, 1044, 1088
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 646, 891
AluI AGCT 2 cut(s) 646, 891
Alw26I GTCTC 3 cut(s) 283, 371, 757
AlwI GGATC 4 cut(s) 54, 67, 825, 838
AoxI GGCC 3 cut(s) 341, 796, 923
AseI ATTAAT 1 cut(s) 224
AspLEI GCGC 2 cut(s) 445, 531
AspS9I GGNCC 3 cut(s) 758, 796, 923
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 26, 1043
AsuII TTCGAA 1 cut(s) 1009
AvaII GGWCC 1 cut(s) 758
BamHI GGATCC 2 cut(s) 59, 830
BanI GGYRCC 1 cut(s) 528
BauI CACGAG 1 cut(s) 358
BbsI GAAGAC 2 cut(s) 887, 897
BbvCI CCTCAGC 1 cut(s) 642
BccI CCATC 2 cut(s) 118, 893
BceAI ACGGC 2 cut(s) 230, 396
BciT130I CCWGG 1 cut(s) 152
BclI TGATCA 2 cut(s) 271, 789
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 3 cut(s) 283, 371, 757
BfoI RGCGCY 1 cut(s) 532
BglII AGATCT 1 cut(s) 1001
BisI GCNGC 3 cut(s) 243, 441, 660
BlsI GCNGC 3 cut(s) 244, 442, 661
Bme1390I CCNGG 2 cut(s) 152, 233
Bme18I GGWCC 1 cut(s) 758
BmgT120I GGNCC 3 cut(s) 758, 796, 923
BmiI GGNNCC 6 cut(s) 61, 102, 134, 530, 797, 832
BmrFI CCNGG 2 cut(s) 152, 233
BmsI GCATC 1 cut(s) 478
BpiI GAAGAC 2 cut(s) 887, 897
BplI GAGNNNNNCTC 2 cut(s) 737, 769
Bpu10I CCTNAGC 2 cut(s) 105, 642
Bpu14I TTCGAA 1 cut(s) 1009
BpuEI CTTGAG 3 cut(s) 181, 358, 461
BpuMI CCSGG 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 529
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 165, 195
Bsc4I CCNNNNNNNGG 1 cut(s) 805
Bse1I ACTGG 2 cut(s) 324, 774
Bse3DI GCAATG 2 cut(s) 669, 720
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 3 cut(s) 309, 558, 754
BseLI CCNNNNNNNGG 1 cut(s) 805
BseMI GCAATG 2 cut(s) 669, 720
BseMII CTCAG 5 cut(s) 96, 366, 656, 768, 818
BseNI ACTGG 2 cut(s) 324, 774
BseRI GAGGAG 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 443
BshFI GGCC 3 cut(s) 343, 798, 925
BshNI GGYRCC 1 cut(s) 528
BsiSI CCGG 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 805
BsmAI GTCTC 3 cut(s) 283, 371, 757
BsmBI CGTCTC 1 cut(s) 371
BsnI GGCC 3 cut(s) 343, 798, 925
Bsp119I TTCGAA 1 cut(s) 1009
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
BspACI CCGC 5 cut(s) 184, 243, 393, 441, 660
BspANI GGCC 3 cut(s) 343, 798, 925
BspCNI CTCAG 5 cut(s) 97, 367, 655, 767, 817
BspFNI CGCG 1 cut(s) 443
BspLI GGNNCC 6 cut(s) 61, 102, 134, 530, 797, 832
BspPI GGATC 4 cut(s) 54, 67, 825, 838
BspT104I TTCGAA 1 cut(s) 1009
BspT107I GGYRCC 1 cut(s) 528
BsrDI GCAATG 2 cut(s) 669, 720
BsrGI TGTACA 1 cut(s) 411
BsrI ACTGG 2 cut(s) 324, 774
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
BssNI GRCGYC 1 cut(s) 529
BssSI CACGAG 1 cut(s) 358
Bst2BI CACGAG 1 cut(s) 358
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 2 cut(s) 172, 298
BstACI GRCGYC 1 cut(s) 529
BstAUI TGTACA 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 1009
BstDEI CTNAG 5 cut(s) 105, 375, 642, 754, 804
BstF5I GGATG 3 cut(s) 309, 558, 754
BstFNI CGCG 1 cut(s) 443
BstH2I RGCGCY 1 cut(s) 532
BstHHI GCGC 2 cut(s) 445, 531
BstKTI GATC 6 cut(s) 43, 62, 274, 792, 833, 1004
BstMAI GTCTC 3 cut(s) 283, 371, 757
BstMBI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
BstMWI GCNNNNNNNGC 3 cut(s) 360, 380, 673
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 2 cut(s) 150, 231
BstSNI TACGTA 1 cut(s) 543
BstUI CGCG 1 cut(s) 443
BstV2I GAAGAC 2 cut(s) 887, 897
BstX2I RGATCY 3 cut(s) 59, 830, 1001
BstYI RGATCY 3 cut(s) 59, 830, 1001
BsuRI GGCC 3 cut(s) 343, 798, 925
BtgZI GCGATG 1 cut(s) 912
BtsCI GGATG 3 cut(s) 309, 558, 754
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 3 cut(s) 331, 612, 767
CfoI GCGC 2 cut(s) 445, 531
Cfr13I GGNCC 3 cut(s) 758, 796, 923
CseI GACGC 1 cut(s) 480
Csp6I GTAC 2 cut(s) 173, 412
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 2 cut(s) 44, 618
CviQI GTAC 2 cut(s) 173, 412
DdeI CTNAG 5 cut(s) 105, 375, 642, 754, 804
DinI GGCGCC 1 cut(s) 530
DpnI GATC 6 cut(s) 42, 61, 273, 791, 832, 1003
DpnII GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
Eco105I TACGTA 1 cut(s) 543
Eco147I AGGCCT 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 758
Eco57I CTGAAG 1 cut(s) 976
EcoO109I RGGNCCY 1 cut(s) 923
EcoRII CCWGG 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 530
EheI GGCGCC 1 cut(s) 530
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 2 cut(s) 47, 621
FalI AAGNNNNNCTT 6 cut(s) 429, 461, 488, 520, 912, 944
FatI CATG 2 cut(s) 43, 617
FauNDI CATATG 1 cut(s) 914
FbaI TGATCA 2 cut(s) 271, 789
Fnu4HI GCNGC 3 cut(s) 243, 441, 660
FokI GGATG 3 cut(s) 316, 565, 761
Fsp4HI GCNGC 3 cut(s) 243, 441, 660
GlaI GCGC 2 cut(s) 444, 530
GluI GCNGC 3 cut(s) 243, 441, 660
HaeII RGCGCY 1 cut(s) 532
HaeIII GGCC 3 cut(s) 343, 798, 925
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 480
HhaI GCGC 2 cut(s) 445, 531
Hin1I GRCGYC 1 cut(s) 529
Hin1II CATG 2 cut(s) 47, 621
Hin6I GCGC 2 cut(s) 443, 529
HinP1I GCGC 2 cut(s) 443, 529
HinfI GANTC 6 cut(s) 178, 330, 802, 965, 1034, 1073
HpaII CCGG 1 cut(s) 233
HphI GGTGA 2 cut(s) 26, 1043
Hpy166II GTNNAC 2 cut(s) 329, 451
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 4 cut(s) 160, 478, 550, 756
Hpy8I GTNNAC 2 cut(s) 329, 451
HpyAV CCTTC 2 cut(s) 914, 1022
HpyCH4III ACNGT 2 cut(s) 172, 298
HpyCH4IV ACGT 2 cut(s) 542, 884
HpyCH4V TGCA 6 cut(s) 516, 605, 612, 717, 725, 999
HpyF10VI GCNNNNNNNGC 3 cut(s) 360, 380, 673
HpyF3I CTNAG 5 cut(s) 105, 375, 642, 754, 804
HpySE526I ACGT 2 cut(s) 542, 884
Hsp92I GRCGYC 1 cut(s) 529
Hsp92II CATG 2 cut(s) 47, 621
HspAI GCGC 2 cut(s) 443, 529
KasI GGCGCC 1 cut(s) 528
Ksp22I TGATCA 2 cut(s) 271, 789
Kzo9I GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
LweI GCATC 1 cut(s) 478
MaeII ACGT 2 cut(s) 542, 884
MaeIII GTNAC 2 cut(s) 116, 306
MalI GATC 6 cut(s) 42, 61, 273, 791, 832, 1003
MboI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
MboII GAAGA 4 cut(s) 590, 673, 892, 897
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 3 cut(s) 59, 830, 1001
MluCI AATT 5 cut(s) 29, 190, 312, 726, 1044
Mly113I GGCGCC 1 cut(s) 529
MlyI GAGTC 3 cut(s) 324, 796, 959
MmeI TCCRAC 1 cut(s) 78
MseI TTAA 1 cut(s) 224
MspI CCGG 1 cut(s) 233
MspR9I CCNGG 2 cut(s) 152, 233
MunI CAATTG 1 cut(s) 726
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 443
MwoI GCNNNNNNNGC 3 cut(s) 360, 380, 673
NarI GGCGCC 1 cut(s) 529
NciI CCSGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 914
NdeII GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
NlaIII CATG 2 cut(s) 47, 621
NlaIV GGNNCC 6 cut(s) 61, 102, 134, 530, 797, 832
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 1009
PceI AGGCCT 1 cut(s) 343
PfeI GAWTC 3 cut(s) 178, 1034, 1073
PkrI GCNGC 3 cut(s) 244, 442, 661
PleI GAGTC 3 cut(s) 324, 796, 959
PluTI GGCGCC 1 cut(s) 532
PpsI GAGTC 3 cut(s) 324, 796, 959
Ppu21I YACGTR 1 cut(s) 543
PshBI ATTAAT 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 6 cut(s) 61, 102, 134, 530, 797, 832
PspPI GGNCC 3 cut(s) 758, 796, 923
PsuI RGATCY 3 cut(s) 59, 830, 1001
RsaI GTAC 2 cut(s) 174, 413
RsaNI GTAC 2 cut(s) 173, 412
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 3 cut(s) 243, 441, 660
Sau3AI GATC 6 cut(s) 40, 59, 271, 789, 830, 1001
Sau96I GGNCC 3 cut(s) 758, 796, 923
SchI GAGTC 3 cut(s) 324, 796, 959
ScrFI CCNGG 2 cut(s) 152, 233
SfaNI GCATC 1 cut(s) 478
SfoI GGCGCC 1 cut(s) 530
SfuI TTCGAA 1 cut(s) 1009
SinI GGWCC 1 cut(s) 758
SmlI CTYRAG 3 cut(s) 160, 337, 476
SmoI CTYRAG 3 cut(s) 160, 337, 476
SnaBI TACGTA 1 cut(s) 543
Sse9I AATT 5 cut(s) 29, 190, 312, 726, 1044
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 5 cut(s) 184, 243, 393, 441, 660
SspDI GGCGCC 1 cut(s) 528
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 2 cut(s) 150, 231
TaaI ACNGT 2 cut(s) 172, 298
TaiI ACGT 2 cut(s) 545, 887
TaqI TCGA 4 cut(s) 257, 434, 963, 1009
TasI AATT 5 cut(s) 29, 190, 312, 726, 1044
TatI WGTACW 1 cut(s) 411
TauI GCSGC 3 cut(s) 245, 443, 662
TfiI GAWTC 3 cut(s) 178, 1034, 1073
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TscAI CASTG 3 cut(s) 331, 612, 774
TseFI GTSAC 1 cut(s) 116
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 158, 337, 936
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 3 cut(s) 331, 612, 774
VpaK11BI GGWCC 1 cut(s) 758
VspI ATTAAT 1 cut(s) 224
XcmI CCANNNNNNNNNTGG 1 cut(s) 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.