Rmu_sc0004505.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004505.1
OG0011883
Physical Location & Seq
Reverse (-)
1330 .. 2391
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004505.1_g000001.1.cds

Sequence Viewer

Length: 1062 bp
atgagaatagatcatgccactaaacaaggatccgaacaagaacaaacccatttgccaggattggagttagaccctgagccatctggtcacaatcatcataggttccactcaatgaacgccctagaaatcttgagggaaacggtacggattctccgcttcaattcctggggttttttggctattgctaccttattaatctgcccggtgtctgccgccgtgcttttgtcgaatatgctagttgatcactcacttgtaaagagactaactgttaggatgttactaattgccaagtccagtggactccccttgaggcctttcatcagccactcgtgccagaagtttgctgagacggctatctcctccgctatgtgctttcctttgtacctcacattgtccttgttgtcgaaagccgcgcttgtttactctgtgtattggagttattccctcaagaagtttgatgcctccaagttttacttgattatgtgcaaaatatggaggcggcttgtttctacgtacgtgtggatgtgtatggtggttgttggttgcctcgccttgtttttgattgctcttcttgcagtgtgcaactcatgttctatatttgggctgtcgcctcagcttatcatatatgccgcaatggtggttgggcttatcttctcggttgtttttgctaatgctattattatttgcaacattgcaattgtgatatgtgttttggaggatgtctcgggaccagaggcattggttcagtctggggctttgatcaggggccagactcaggtgggtctgctcatatttcttggatccacatttggaatggcttttgttgagggcttgtttgagcatagagtgaagacgttgagctatggcgatgggtcttctcgcatatgggaagggcctcttttggtggttatgtattcatttgtagtgcttatcgactctatgatgagtgctgttttctacttcagttgcagatcttttaggatggaaacatctttagaaggtgaatctcattcaattttggaaacgataaccttttctgctgaatcagtcggtattcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

353

Amino Acids

39.12

Weight (kDa)

7.57

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 413
AciI CCGC 6 cut(s) 154, 213, 363, 411, 499, 630
AclWI GGATC 4 cut(s) 24, 37, 795, 808
AcuI CTGAAG 1 cut(s) 946
AfaI GTAC 3 cut(s) 144, 383, 515
AfiI CCNNNNNNNGG 1 cut(s) 775
AflIII ACRYGT 1 cut(s) 516
AgsI TTSAA 3 cut(s) 160, 1014, 1058
AjnI CCWGG 2 cut(s) 55, 164
AluBI AGCT 2 cut(s) 616, 861
AluI AGCT 2 cut(s) 616, 861
Alw26I GTCTC 3 cut(s) 253, 341, 727
AlwI GGATC 4 cut(s) 24, 37, 795, 808
Ama87I CYCGRG 1 cut(s) 724
AoxI GGCC 3 cut(s) 311, 766, 893
AseI ATTAAT 1 cut(s) 194
AspLEI GCGC 1 cut(s) 415
AspS9I GGNCC 3 cut(s) 728, 766, 893
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 1013
AvaI CYCGRG 1 cut(s) 724
AvaII GGWCC 1 cut(s) 728
BamHI GGATCC 2 cut(s) 29, 800
BauI CACGAG 1 cut(s) 328
BbsI GAAGAC 2 cut(s) 857, 867
BbvCI CCTCAGC 1 cut(s) 612
BccI CCATC 3 cut(s) 88, 863, 976
BceAI ACGGC 2 cut(s) 200, 366
BciT130I CCWGG 2 cut(s) 57, 166
BclI TGATCA 2 cut(s) 241, 759
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 3 cut(s) 253, 341, 727
BfaI CTAG 2 cut(s) 122, 236
BglII AGATCT 1 cut(s) 971
BisI GCNGC 4 cut(s) 213, 411, 500, 630
BlsI GCNGC 4 cut(s) 214, 412, 501, 631
Bme1390I CCNGG 3 cut(s) 57, 166, 203
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 724
BmgT120I GGNCC 3 cut(s) 728, 766, 893
BmiI GGNNCC 5 cut(s) 31, 104, 729, 767, 802
BmrFI CCNGG 3 cut(s) 57, 166, 203
BmsI GCATC 1 cut(s) 448
BpiI GAAGAC 2 cut(s) 857, 867
BplI GAGNNNNNCTC 2 cut(s) 707, 739
Bpu10I CCTNAGC 2 cut(s) 75, 612
BpuEI CTTGAG 3 cut(s) 151, 328, 431
BpuMI CCSGG 1 cut(s) 203
BsaAI YACGTR 2 cut(s) 513, 517
BsaJI CCNNGG 1 cut(s) 165
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 775
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 2 cut(s) 639, 690
BseBI CCWGG 2 cut(s) 57, 166
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 4 cut(s) 279, 528, 724, 987
BseLI CCNNNNNNNGG 1 cut(s) 775
BseMI GCAATG 2 cut(s) 639, 690
BseMII CTCAG 4 cut(s) 66, 336, 626, 788
BseNI ACTGG 1 cut(s) 294
BseRI GAGGAG 1 cut(s) 349
Bsh1236I CGCG 1 cut(s) 413
BshFI GGCC 3 cut(s) 313, 768, 895
BsiHKCI CYCGRG 1 cut(s) 724
BsiSI CCGG 1 cut(s) 203
BsiWI CGTACG 1 cut(s) 513
BslFI GGGAC 1 cut(s) 741
BslI CCNNNNNNNGG 1 cut(s) 775
BsmAI GTCTC 3 cut(s) 253, 341, 727
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 741
BsnI GGCC 3 cut(s) 313, 768, 895
BsoBI CYCGRG 1 cut(s) 724
Bsp143I GATC 6 cut(s) 10, 29, 241, 759, 800, 971
BspACI CCGC 6 cut(s) 154, 213, 363, 411, 499, 630
BspANI GGCC 3 cut(s) 313, 768, 895
BspCNI CTCAG 4 cut(s) 67, 337, 625, 787
BspFNI CGCG 1 cut(s) 413
BspLI GGNNCC 5 cut(s) 31, 104, 729, 767, 802
BspPI GGATC 4 cut(s) 24, 37, 795, 808
BspQI GCTCTTC 1 cut(s) 573
BsrDI GCAATG 2 cut(s) 639, 690
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 6 cut(s) 10, 29, 241, 759, 800, 971
BssSI CACGAG 1 cut(s) 328
Bst2BI CACGAG 1 cut(s) 328
Bst2UI CCWGG 2 cut(s) 57, 166
Bst4CI ACNGT 2 cut(s) 142, 268
Bst6I CTCTTC 1 cut(s) 573
BstBAI YACGTR 2 cut(s) 513, 517
BstDEI CTNAG 4 cut(s) 75, 345, 612, 774
BstF5I GGATG 4 cut(s) 279, 528, 724, 987
BstFNI CGCG 1 cut(s) 413
BstHHI GCGC 1 cut(s) 415
BstKTI GATC 6 cut(s) 13, 32, 244, 762, 803, 974
BstMAI GTCTC 3 cut(s) 253, 341, 727
BstMBI GATC 6 cut(s) 10, 29, 241, 759, 800, 971
BstMWI GCNNNNNNNGC 3 cut(s) 330, 350, 572
BstNI CCWGG 2 cut(s) 57, 166
BstSCI CCNGG 3 cut(s) 55, 164, 201
BstSNI TACGTA 1 cut(s) 513
BstUI CGCG 1 cut(s) 413
BstV2I GAAGAC 2 cut(s) 857, 867
BstX2I RGATCY 3 cut(s) 29, 800, 971
BstYI RGATCY 3 cut(s) 29, 800, 971
BsuRI GGCC 3 cut(s) 313, 768, 895
BtgZI GCGATG 1 cut(s) 882
BtsCI GGATG 4 cut(s) 279, 528, 724, 987
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 301, 582
CfoI GCGC 1 cut(s) 415
Cfr13I GGNCC 3 cut(s) 728, 766, 893
Csp6I GTAC 3 cut(s) 143, 382, 514
CspCI CAANNNNNGTGG 2 cut(s) 277, 312
CviAII CATG 2 cut(s) 14, 588
CviQI GTAC 3 cut(s) 143, 382, 514
DdeI CTNAG 4 cut(s) 75, 345, 612, 774
DpnI GATC 6 cut(s) 12, 31, 243, 761, 802, 973
DpnII GATC 6 cut(s) 10, 29, 241, 759, 800, 971
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
Eco105I TACGTA 1 cut(s) 513
Eco147I AGGCCT 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 946
Eco88I CYCGRG 1 cut(s) 724
EcoO109I RGGNCCY 1 cut(s) 893
EcoRII CCWGG 2 cut(s) 55, 164
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 2 cut(s) 17, 591
FalI AAGNNNNNCTT 6 cut(s) 399, 431, 458, 490, 882, 914
FaqI GGGAC 1 cut(s) 741
FatI CATG 2 cut(s) 13, 587
FauNDI CATATG 1 cut(s) 884
FbaI TGATCA 2 cut(s) 241, 759
Fnu4HI GCNGC 4 cut(s) 213, 411, 500, 630
FokI GGATG 4 cut(s) 286, 535, 731, 994
Fsp4HI GCNGC 4 cut(s) 213, 411, 500, 630
FspBI CTAG 2 cut(s) 122, 236
GlaI GCGC 1 cut(s) 414
GluI GCNGC 4 cut(s) 213, 411, 500, 630
HaeIII GGCC 3 cut(s) 313, 768, 895
HapII CCGG 1 cut(s) 203
HhaI GCGC 1 cut(s) 415
Hin1II CATG 2 cut(s) 17, 591
Hin6I GCGC 1 cut(s) 413
HinP1I GCGC 1 cut(s) 413
HinfI GANTC 6 cut(s) 148, 300, 772, 935, 1004, 1043
HpaII CCGG 1 cut(s) 203
HphI GGTGA 1 cut(s) 1013
Hpy166II GTNNAC 2 cut(s) 299, 421
Hpy188I TCNGA 1 cut(s) 34
Hpy188III TCNNGA 3 cut(s) 130, 448, 726
Hpy8I GTNNAC 2 cut(s) 299, 421
HpyAV CCTTC 2 cut(s) 884, 992
HpyCH4III ACNGT 2 cut(s) 142, 268
HpyCH4IV ACGT 3 cut(s) 512, 516, 854
HpyCH4V TGCA 6 cut(s) 486, 575, 582, 687, 695, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 350, 572
HpyF3I CTNAG 4 cut(s) 75, 345, 612, 774
HpySE526I ACGT 3 cut(s) 512, 516, 854
Hsp92II CATG 2 cut(s) 17, 591
HspAI GCGC 1 cut(s) 413
Ksp22I TGATCA 2 cut(s) 241, 759
Kzo9I GATC 6 cut(s) 10, 29, 241, 759, 800, 971
LguI GCTCTTC 1 cut(s) 573
LweI GCATC 1 cut(s) 448
MaeI CTAG 2 cut(s) 122, 236
MaeII ACGT 3 cut(s) 512, 516, 854
MaeIII GTNAC 2 cut(s) 86, 276
MalI GATC 6 cut(s) 12, 31, 243, 761, 802, 973
MboI GATC 6 cut(s) 10, 29, 241, 759, 800, 971
MboII GAAGA 4 cut(s) 560, 643, 862, 867
MfeI CAATTG 1 cut(s) 696
MflI RGATCY 3 cut(s) 29, 800, 971
MluCI AATT 4 cut(s) 160, 282, 696, 1014
MlyI GAGTC 3 cut(s) 294, 766, 929
MseI TTAA 1 cut(s) 194
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 3 cut(s) 57, 166, 203
MunI CAATTG 1 cut(s) 696
MvaI CCWGG 2 cut(s) 57, 166
MvnI CGCG 1 cut(s) 413
MwoI GCNNNNNNNGC 3 cut(s) 330, 350, 572
NciI CCSGG 1 cut(s) 203
NdeI CATATG 1 cut(s) 884
NdeII GATC 6 cut(s) 10, 29, 241, 759, 800, 971
NlaIII CATG 2 cut(s) 17, 591
NlaIV GGNNCC 5 cut(s) 31, 104, 729, 767, 802
NmuCI GTSAC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 573
PfeI GAWTC 3 cut(s) 148, 1004, 1043
Pfl23II CGTACG 1 cut(s) 513
PkrI GCNGC 4 cut(s) 214, 412, 501, 631
PleI GAGTC 3 cut(s) 294, 766, 929
PpsI GAGTC 3 cut(s) 294, 766, 929
Ppu21I YACGTR 2 cut(s) 513, 517
PshBI ATTAAT 1 cut(s) 194
Psp6I CCWGG 2 cut(s) 55, 164
PspGI CCWGG 2 cut(s) 55, 164
PspLI CGTACG 1 cut(s) 513
PspN4I GGNNCC 5 cut(s) 31, 104, 729, 767, 802
PspPI GGNCC 3 cut(s) 728, 766, 893
PsuI RGATCY 3 cut(s) 29, 800, 971
RsaI GTAC 3 cut(s) 144, 383, 515
RsaNI GTAC 3 cut(s) 143, 382, 514
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 4 cut(s) 213, 411, 500, 630
Sau3AI GATC 6 cut(s) 10, 29, 241, 759, 800, 971
Sau96I GGNCC 3 cut(s) 728, 766, 893
SchI GAGTC 3 cut(s) 294, 766, 929
ScrFI CCNGG 3 cut(s) 57, 166, 203
SfaNI GCATC 1 cut(s) 448
SinI GGWCC 1 cut(s) 728
SmlI CTYRAG 3 cut(s) 130, 307, 446
SmoI CTYRAG 3 cut(s) 130, 307, 446
SnaBI TACGTA 1 cut(s) 513
Sse9I AATT 4 cut(s) 160, 282, 696, 1014
SseBI AGGCCT 1 cut(s) 313
SsiI CCGC 6 cut(s) 154, 213, 363, 411, 499, 630
SspMI CTAG 2 cut(s) 122, 236
StuI AGGCCT 1 cut(s) 313
StyD4I CCNGG 3 cut(s) 55, 164, 201
TaaI ACNGT 2 cut(s) 142, 268
TaiI ACGT 3 cut(s) 515, 519, 857
TaqI TCGA 3 cut(s) 227, 404, 933
TasI AATT 4 cut(s) 160, 282, 696, 1014
TauI GCSGC 4 cut(s) 215, 413, 502, 632
TfiI GAWTC 3 cut(s) 148, 1004, 1043
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TscAI CASTG 2 cut(s) 301, 582
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 128, 307, 906
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 301, 582
VpaK11BI GGWCC 1 cut(s) 728
VspI ATTAAT 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 811
XspI CTAG 2 cut(s) 122, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.