AT1G69430

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011883
Physical Location & Seq
Forward (+)
26097729 .. 26099388
1660 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69430.1

Sequence Viewer

Length: 1053 bp
ATGGAAATGGGTTTATCTGGGATGATGAATCATGGAGGATCAAATTCAAAATTACGGAAATTTGAGATAGAATCATCATCATCATCACCATCATCATCCTCTGATCATAAGTTTCATTCGATGAATGCTCTTGAGATCTTGAGAGAAACCGTTAGAATTCTCCGGTATAATCTTGGTGCTTTCATGTTAATCGCTCTTCTTTTGATCTGTCCTGTTTCCGCTATTCTATTACCAAACCTTTTAGTTGATCAATCAGTTGTTAATTCACTTACAGTGAGGCTTCTCTTAGTTTCCAAATCAAGTGGTCTTCCTTTATTGCCTTTTGTTAGAAACTCTTGTCAGAAATTCTCTGAGACAGCTGTTTCTTCTGCAATGTGTTTCCCTTTGTTCATCACTTTGTCACTCTTGTCTAGAGCTGCTGTGGTTTACTCTGTTGATTGCACTTATTCGAGGAAGAAAGTTGTGGTGACTAAGTTTGTGGTGATAATGCAGAGACTATGGAAACGTCTTGTGATCACTTACTTGTGGATTTGTACTGTGATTGTTGTTTGTCTCACTTCCTTCTGCGTGTTTCTCGTCGCGGTTTGTAGCTCTTTCTATGTTCTCGGATTCTCTCCTGATTTTAATGCCTATGGAGCTATCTTAGTTGGTTTGGTGTTCTCAGTAGTGTTTGCAAATGCTATCATTATCTGTAACACCACGATCGTGATCTCGATTCTTGAAGATGTGTCGGGGCCAGGAGCGTTGGTTAGAGCGAGTGATTTGATCAAAGGACAGACTCAGGTTGGTTTGTTGATATTTCTAGGATCAACAATAGGGTTGACGTTTGTGGAAGGATTGTTTGAGCATAGAGTGAAGAGTTTGAGTTATGGAGATGGTTCTTCGAGGTTATGGGAAGGTCCACTACTTGTGGTGATGTATTCATTTGTGGTGCTTATTGATACAATGATGAGTGCAGTGTTCTATTTTAGTTGCCGGTCTTATAGTATGGAAGCTGTTGAAGCTTTGGAAGCTTCTGGAGAGATTGTGTCCCAAGATTTGTCCCTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

350

Amino Acids

38.29

Weight (kDa)

8.01

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011883)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26650 AT1G69430
fragaria_vesca FvH4_5g29140
malus_domestica MD05G1259900.v1.1 MD13G1068000.v1.1 MD16G1066800.v1.1
prunus_persica Prupe.1G280100_v2.0.a1
pyrus_communis pycom13g05980 pycom16g05820
rosa_chinensis RchiOBHm_Chr7g0221801
rosa_laevigata RLG00000002121
rosa_multiflora Rmu_sc0004505.1_g000001
rosa_roxburghii Rroxscaffold_3G00237700
rosa_rugosa Rorug07G0203500
rosa_samantha Rh7AG344500 Rh7BG335200 Rh7CG361800 Rh7DG342200
rosa_wichuraiana Rw7G029210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 581
AciI CCGC 2 cut(s) 219, 581
AclWI GGATC 2 cut(s) 46, 814
AcsI RAATTY 4 cut(s) 43, 59, 156, 344
AfaI GTAC 1 cut(s) 535
AgsI TTSAA 3 cut(s) 48, 722, 1001
AjnI CCWGG 1 cut(s) 736
AleI CACNNNNGTG 1 cut(s) 704
AluBI AGCT 7 cut(s) 359, 416, 591, 638, 995, 1004, 1013
AluI AGCT 7 cut(s) 359, 416, 591, 638, 995, 1004, 1013
Alw26I GTCTC 3 cut(s) 347, 487, 557
AlwI GGATC 2 cut(s) 46, 814
AoxI GGCC 1 cut(s) 734
ApeKI GCWGC 1 cut(s) 416
ApoI RAATTY 4 cut(s) 43, 59, 156, 344
AspS9I GGNCC 2 cut(s) 734, 899
AsuHPI GGTGA 4 cut(s) 78, 478, 493, 925
AvaII GGWCC 1 cut(s) 899
BarI GAAGNNNNNNTAC 2 cut(s) 888, 920
BbsI GAAGAC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 403
BccI CCATC 2 cut(s) 97, 869
BciT130I CCWGG 1 cut(s) 738
BclI TGATCA 4 cut(s) 103, 247, 513, 765
BcoDI GTCTC 3 cut(s) 347, 487, 557
BfaI CTAG 2 cut(s) 411, 803
BglII AGATCT 1 cut(s) 135
BisI GCNGC 1 cut(s) 417
BlsI GCNGC 1 cut(s) 418
Bme1390I CCNGG 1 cut(s) 738
Bme18I GGWCC 1 cut(s) 899
BmgT120I GGNCC 2 cut(s) 734, 899
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 1 cut(s) 1038
BpuEI CTTGAG 2 cut(s) 152, 160
BsaBI GATNNNNATC 1 cut(s) 707
BsaWI WCCGGW 1 cut(s) 162
BsaXI ACNNNNNCTCC 4 cut(s) 732, 762, 1011, 1041
Bse118I RCCGGY 1 cut(s) 975
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 707
BseBI CCWGG 1 cut(s) 738
BseGI GGATG 2 cut(s) 27, 95
BseJI GATNNNNATC 1 cut(s) 707
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 3 cut(s) 342, 675, 794
BseXI GCAGC 1 cut(s) 403
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 581
Bsh1285I CGRYCG 1 cut(s) 705
BshFI GGCC 1 cut(s) 736
BsiEI CGRYCG 1 cut(s) 705
BsiSI CCGG 2 cut(s) 163, 976
BslFI GGGAC 2 cut(s) 1015, 1027
BsmAI GTCTC 3 cut(s) 347, 487, 557
BsmFI GGGAC 2 cut(s) 1015, 1027
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 736
BspACI CCGC 2 cut(s) 219, 581
BspANI GGCC 1 cut(s) 736
BspCNI CTCAG 3 cut(s) 343, 674, 793
BspFNI CGCG 1 cut(s) 581
BspLI GGNNCC 1 cut(s) 735
BspPI GGATC 2 cut(s) 46, 814
BspQI GCTCTTC 1 cut(s) 201
BsrDI GCAATG 1 cut(s) 378
BsrFI RCCGGY 1 cut(s) 975
BssAI RCCGGY 1 cut(s) 975
Bst2UI CCWGG 1 cut(s) 738
Bst4CI ACNGT 3 cut(s) 151, 274, 538
Bst6I CTCTTC 2 cut(s) 201, 851
BstDEI CTNAG 6 cut(s) 286, 351, 471, 643, 661, 780
BstF5I GGATG 2 cut(s) 27, 95
BstFNI CGCG 1 cut(s) 581
BstMAI GTCTC 3 cut(s) 347, 487, 557
BstMCI CGRYCG 1 cut(s) 705
BstMWI GCNNNNNNNGC 3 cut(s) 635, 1001, 1010
BstNI CCWGG 1 cut(s) 738
BstSCI CCNGG 1 cut(s) 736
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
BsuRI GGCC 1 cut(s) 736
BtsCI GGATG 2 cut(s) 27, 95
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 2 cut(s) 279, 963
Cfr10I RCCGGY 1 cut(s) 975
Cfr13I GGNCC 2 cut(s) 734, 899
Csp6I GTAC 1 cut(s) 534
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 2 cut(s) 32, 184
CviJI RGCY 9 cut(s) 280, 359, 416, 591, 638, 736, 995, 1004, 1013
CviKI_1 RGCY 9 cut(s) 280, 359, 416, 591, 638, 736, 995, 1004, 1013
CviQI GTAC 1 cut(s) 534
DdeI CTNAG 6 cut(s) 286, 351, 471, 643, 661, 780
Eam1104I CTCTTC 2 cut(s) 201, 851
EarI CTCTTC 2 cut(s) 201, 851
Eco47I GGWCC 1 cut(s) 899
EcoRI GAATTC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 736
FaeI CATG 2 cut(s) 35, 187
FaqI GGGAC 2 cut(s) 1015, 1027
FatI CATG 2 cut(s) 31, 183
FbaI TGATCA 4 cut(s) 103, 247, 513, 765
Fnu4HI GCNGC 1 cut(s) 417
FokI GGATG 2 cut(s) 34, 82
Fsp4HI GCNGC 1 cut(s) 417
FspBI CTAG 2 cut(s) 411, 803
GluI GCNGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 1038
HaeIII GGCC 1 cut(s) 736
HapII CCGG 2 cut(s) 163, 976
Hin1II CATG 2 cut(s) 35, 187
HincII GTYRAC 1 cut(s) 822
HindII GTYRAC 1 cut(s) 822
HindIII AAGCTT 2 cut(s) 1002, 1011
HinfI GANTC 5 cut(s) 28, 71, 609, 715, 778
HpaII CCGG 2 cut(s) 163, 976
HphI GGTGA 4 cut(s) 78, 478, 493, 925
Hpy166II GTNNAC 3 cut(s) 427, 822, 902
Hpy188I TCNGA 4 cut(s) 103, 342, 352, 608
Hpy188III TCNNGA 8 cut(s) 131, 139, 411, 617, 706, 712, 719, 1017
Hpy8I GTNNAC 3 cut(s) 427, 822, 902
Hpy99I CGWCG 1 cut(s) 581
HpyAV CCTTC 3 cut(s) 571, 827, 890
HpyCH4III ACNGT 3 cut(s) 151, 274, 538
HpyCH4IV ACGT 2 cut(s) 505, 824
HpyCH4V TGCA 5 cut(s) 371, 441, 490, 674, 956
HpyF10VI GCNNNNNNNGC 3 cut(s) 635, 1001, 1010
HpyF3I CTNAG 6 cut(s) 286, 351, 471, 643, 661, 780
HpySE526I ACGT 2 cut(s) 505, 824
Hsp92II CATG 2 cut(s) 35, 187
Ksp22I TGATCA 4 cut(s) 103, 247, 513, 765
LguI GCTCTTC 1 cut(s) 201
LmnI GCTCC 2 cut(s) 635, 740
LpnPI CCDG 9 cut(s) 3, 176, 225, 630, 723, 750, 767, 989, 1002
Lsp1109I GCAGC 1 cut(s) 403
MaeI CTAG 2 cut(s) 411, 803
MaeII ACGT 2 cut(s) 505, 824
MaeIII GTNAC 3 cut(s) 399, 466, 692
MboII GAAGA 7 cut(s) 188, 299, 357, 466, 734, 868, 873
MflI RGATCY 1 cut(s) 135
MluCI AATT 6 cut(s) 43, 50, 59, 156, 262, 344
MlyI GAGTC 1 cut(s) 772
MnlI CCTC 5 cut(s) 29, 109, 270, 444, 879
MseI TTAA 4 cut(s) 188, 261, 624, 1051
MslI CAYNNNNRTG 1 cut(s) 704
MspA1I CMGCKG 1 cut(s) 359
MspI CCGG 2 cut(s) 163, 976
MspR9I CCNGG 1 cut(s) 738
Mva1269I GAATGC 1 cut(s) 130
MvaI CCWGG 1 cut(s) 738
MvnI CGCG 1 cut(s) 581
MwoI GCNNNNNNNGC 3 cut(s) 635, 1001, 1010
NlaIII CATG 2 cut(s) 35, 187
NlaIV GGNNCC 1 cut(s) 735
NmuCI GTSAC 2 cut(s) 399, 466
OliI CACNNNNGTG 1 cut(s) 704
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 4 cut(s) 28, 71, 609, 715
PkrI GCNGC 1 cut(s) 418
Ple19I CGATCG 1 cut(s) 705
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 736
PspGI CCWGG 1 cut(s) 736
PspN4I GGNNCC 1 cut(s) 735
PspPI GGNCC 2 cut(s) 734, 899
PsuI RGATCY 1 cut(s) 135
PvuI CGATCG 1 cut(s) 705
PvuII CAGCTG 1 cut(s) 359
RsaI GTAC 1 cut(s) 535
RsaNI GTAC 1 cut(s) 534
RseI CAYNNNNRTG 1 cut(s) 704
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 4 cut(s) 188, 261, 624, 1051
SatI GCNGC 1 cut(s) 417
Sau96I GGNCC 2 cut(s) 734, 899
SchI GAGTC 1 cut(s) 772
ScrFI CCNGG 1 cut(s) 738
SinI GGWCC 1 cut(s) 899
SmiMI CAYNNNNRTG 1 cut(s) 704
SmlI CTYRAG 2 cut(s) 131, 139
SmoI CTYRAG 2 cut(s) 131, 139
Sse9I AATT 6 cut(s) 43, 50, 59, 156, 262, 344
SsiI CCGC 2 cut(s) 219, 581
SspMI CTAG 2 cut(s) 411, 803
StyD4I CCNGG 1 cut(s) 736
TaaI ACNGT 3 cut(s) 151, 274, 538
TaiI ACGT 2 cut(s) 508, 827
TaqI TCGA 4 cut(s) 119, 449, 713, 884
TasI AATT 6 cut(s) 43, 50, 59, 156, 262, 344
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 4 cut(s) 28, 71, 609, 715
Tru1I TTAA 4 cut(s) 188, 261, 624, 1051
Tru9I TTAA 4 cut(s) 188, 261, 624, 1051
TscAI CASTG 2 cut(s) 279, 963
TseFI GTSAC 2 cut(s) 399, 466
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 2 cut(s) 399, 466
TspDTI ATGAA 6 cut(s) 41, 104, 137, 172, 379, 912
TspGWI ACGGA 1 cut(s) 70
TspRI CASTG 2 cut(s) 279, 963
VpaK11BI GGWCC 1 cut(s) 899
XapI RAATTY 4 cut(s) 43, 59, 156, 344
XbaI TCTAGA 1 cut(s) 410
XspI CTAG 2 cut(s) 411, 803
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.