AT1G26660

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008665
Physical Location & Seq
Forward (+)
9211599 .. 9214004
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26660.2

Sequence Viewer

Length: 459 bp
ATGGAGGAGGGACGTCAAAAAGACTTGCAATTGTTGGAGGAGATTATCGACAAAGGTTTGAAACAGAAGCTTGTACATGCAACTGCTTCACGGGACAAGATCTTTGAAGAACAAAAAACACTCTCTGACTTGCGGAAAAACCTAGAAACTCTGGAGAAGAATGGTGTAAATAGTCTCAAAACAAGGGTCAACCTTGGTTCAGAAGTTTACATGCAAGCTGAAGTGCCAGATACTCGGCACATATTCATGGATGTAGGCCTCGGCTTTTATGTGGAGTTCACACGGCAAGAAGCTCTTGACTATATAGCACAAAGGGAGGAAAGAACTCAAAAACAACTAGAAGAGTATACTGGTGTTATTACGCAGATCAAAGGGCGCATCAAACTGGCTCATTACCAGATTCAGCAAATACTCAATCTTCCTGAAGAGAATCCGTCATCCCGGCAACGTGCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

152

Amino Acids

17.76

Weight (kDa)

5.98

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 68 - 164 3.8e-24 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 16
AccI GTMKAC 1 cut(s) 347
AciI CCGC 1 cut(s) 133
AcuI CTGAAG 2 cut(s) 240, 444
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 2 cut(s) 61, 107
AluBI AGCT 3 cut(s) 70, 218, 293
AluI AGCT 3 cut(s) 70, 218, 293
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 256
ArsI GACNNNNNNTTYG 4 cut(s) 86, 118, 171, 203
AspLEI GCGC 1 cut(s) 378
AsuC2I CCSGG 1 cut(s) 442
BceAI ACGGC 1 cut(s) 299
BcnI CCSGG 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 179
BfaI CTAG 2 cut(s) 143, 338
BglII AGATCT 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 442
BmrFI CCNGG 1 cut(s) 442
BmsI GCATC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 442
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 193, 259
Bse1I ACTGG 2 cut(s) 355, 390
BseDI CCNNGG 2 cut(s) 193, 259
BseGI GGATG 2 cut(s) 256, 437
BseNI ACTGG 2 cut(s) 355, 390
BseRI GAGGAG 2 cut(s) 20, 53
BshFI GGCC 1 cut(s) 258
BsiSI CCGG 1 cut(s) 442
BslFI GGGAC 2 cut(s) 24, 107
BsmAI GTCTC 1 cut(s) 179
BsmFI GGGAC 2 cut(s) 24, 107
BsnI GGCC 1 cut(s) 258
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 2 cut(s) 99, 366
BspACI CCGC 1 cut(s) 133
BspANI GGCC 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 73
BsrI ACTGG 2 cut(s) 355, 390
BssECI CCNNGG 2 cut(s) 193, 259
BssMI GATC 2 cut(s) 99, 366
BssNAI GTATAC 1 cut(s) 348
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 193
Bst1107I GTATAC 1 cut(s) 348
Bst6I CTCTTC 2 cut(s) 336, 420
BstACI GRCGYC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 73
BstC8I GCNNGC 1 cut(s) 216
BstF5I GGATG 2 cut(s) 256, 437
BstHHI GCGC 1 cut(s) 378
BstKTI GATC 2 cut(s) 102, 369
BstMAI GTCTC 1 cut(s) 179
BstMBI GATC 2 cut(s) 99, 366
BstNSI RCATGY 2 cut(s) 80, 214
BstSCI CCNGG 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 99
BstYI RGATCY 1 cut(s) 99
BstZ17I GTATAC 1 cut(s) 348
BsuRI GGCC 1 cut(s) 258
BtsCI GGATG 2 cut(s) 256, 437
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 378
Csp6I GTAC 1 cut(s) 74
CviAII CATG 3 cut(s) 77, 211, 247
CviJI RGCY 6 cut(s) 70, 218, 258, 264, 293, 389
CviKI_1 RGCY 6 cut(s) 70, 218, 258, 264, 293, 389
CviQI GTAC 1 cut(s) 74
DpnI GATC 2 cut(s) 101, 368
DpnII GATC 2 cut(s) 99, 366
Eam1104I CTCTTC 2 cut(s) 336, 420
EarI CTCTTC 2 cut(s) 336, 420
Eco130I CCWWGG 1 cut(s) 193
Eco147I AGGCCT 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 240, 444
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 3 cut(s) 80, 214, 250
FaiI YATR 8 cut(s) 78, 212, 242, 248, 270, 303, 305, 348
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 2 cut(s) 24, 107
FatI CATG 3 cut(s) 76, 210, 246
FblI GTMKAC 1 cut(s) 347
FokI GGATG 2 cut(s) 263, 424
FspBI CTAG 2 cut(s) 143, 338
GlaI GCGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 258
HapII CCGG 1 cut(s) 442
HhaI GCGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 13
Hin1II CATG 3 cut(s) 80, 214, 250
Hin6I GCGC 1 cut(s) 376
HinP1I GCGC 1 cut(s) 376
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 2 cut(s) 400, 430
HpaII CCGG 1 cut(s) 442
Hpy166II GTNNAC 4 cut(s) 190, 208, 279, 348
Hpy188I TCNGA 2 cut(s) 127, 202
Hpy188III TCNNGA 3 cut(s) 152, 296, 422
Hpy8I GTNNAC 4 cut(s) 190, 208, 279, 348
HpyCH4IV ACGT 2 cut(s) 13, 448
HpyCH4V TGCA 3 cut(s) 28, 80, 214
HpySE526I ACGT 2 cut(s) 13, 448
Hsp92I GRCGYC 1 cut(s) 13
Hsp92II CATG 3 cut(s) 80, 214, 250
HspAI GCGC 1 cut(s) 376
Kzo9I GATC 2 cut(s) 99, 366
LpnPI CCDG 7 cut(s) 137, 240, 336, 371, 410, 435, 455
LweI GCATC 1 cut(s) 387
MaeI CTAG 2 cut(s) 143, 338
MaeII ACGT 2 cut(s) 13, 448
MalI GATC 2 cut(s) 101, 368
MboI GATC 2 cut(s) 99, 366
MboII GAAGA 5 cut(s) 119, 169, 353, 410, 437
MfeI CAATTG 1 cut(s) 29
MflI RGATCY 1 cut(s) 99
MluCI AATT 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 3 cut(s) 31, 269, 310
MslI CAYNNNNRTG 1 cut(s) 245
MspI CCGG 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 442
MunI CAATTG 1 cut(s) 29
NciI CCSGG 1 cut(s) 442
NdeII GATC 2 cut(s) 99, 366
NlaIII CATG 3 cut(s) 80, 214, 250
NmeAIII GCCGAG 2 cut(s) 214, 240
NspI RCATGY 2 cut(s) 80, 214
PceI AGGCCT 1 cut(s) 258
PfeI GAWTC 2 cut(s) 400, 430
PsuI RGATCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 245
Sau3AI GATC 2 cut(s) 99, 366
ScrFI CCNGG 1 cut(s) 442
SetI ASST 8 cut(s) 16, 58, 72, 144, 195, 220, 295, 451
SfaNI GCATC 1 cut(s) 387
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 1 cut(s) 29
SseBI AGGCCT 1 cut(s) 258
SsiI CCGC 1 cut(s) 133
SspMI CTAG 2 cut(s) 143, 338
StuI AGGCCT 1 cut(s) 258
StyD4I CCNGG 1 cut(s) 440
StyI CCWWGG 1 cut(s) 193
TaiI ACGT 2 cut(s) 16, 451
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 73
TfiI GAWTC 2 cut(s) 400, 430
TspDTI ATGAA 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 423
XceI RCATGY 2 cut(s) 80, 214
XmiI GTMKAC 1 cut(s) 347
XspI CTAG 2 cut(s) 143, 338
ZraI GACGTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.