Rh4BG377900

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0008665
Physical Location & Seq
Forward (+)
53291578 .. 53293745
2168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG377900.1

Sequence Viewer

Length: 459 bp
ATGGAGAGCTACCGACAACAAAAGATACAGAAATTGGAGGAGTTCGTCGATGGCCGCCTCAAACCTGACCTTGTTCAAACCATCGCTCAACGGGACAAGGTGTTTGAAAAGCAAAAAGTTTTCTCGGATTTGCGAAAGAACATTGAGAACTTGGAGAAAAATAGTGTAACCAGTCTTAGGACGATGGTAAATCTTGGTTCTGAAGTTTATATGCAAGCTGAAGTGCCAGATGCGCGACGCATATTTGTAGATGTTGGACTTGGATTCCATGTGGAATTTACCTGGTCTGAAGCTTTGAATTACATATCTCAAAGAGAAGAAAAGTTAGAGAGGGAAATTGAAGATTATACCAACCGCATTGCCTCGATTAAATCCCACATAAAGATGGTAAGTTCACTTCAAGTTGAATGGTGCCTTTTCATTTCATTGTTACAGTTTTTTCTTTCACATGTTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

152

Amino Acids

18.01

Weight (kDa)

5.97

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 130 3.6e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 411
AccII CGCG 1 cut(s) 235
AciI CCGC 2 cut(s) 55, 355
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 3 cut(s) 222, 240, 309
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 6 cut(s) 77, 107, 298, 341, 401, 407
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 3 cut(s) 9, 218, 293
AluI AGCT 3 cut(s) 9, 218, 293
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
AspLEI GCGC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 411
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BccI CCATC 4 cut(s) 44, 89, 178, 379
BciT130I CCWGG 1 cut(s) 283
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 54
BshNI GGYRCC 1 cut(s) 411
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 54
BspACI CCGC 2 cut(s) 55, 355
BspANI GGCC 1 cut(s) 54
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 1 cut(s) 413
BspT107I GGYRCC 1 cut(s) 411
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 435
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 283
BstNSI RCATGY 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 281
BstUI CGCG 1 cut(s) 235
BsuRI GGCC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 235
CseI GACGC 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 281
CviAII CATG 2 cut(s) 269, 449
CviJI RGCY 4 cut(s) 9, 54, 218, 293
CviKI_1 RGCY 4 cut(s) 9, 54, 218, 293
DdeI CTNAG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 52
Eco57I CTGAAG 3 cut(s) 222, 240, 309
EcoRII CCWGG 1 cut(s) 281
FaeI CATG 2 cut(s) 272, 452
FaiI YATR 8 cut(s) 210, 212, 242, 270, 305, 348, 380, 450
FaqI GGGAC 1 cut(s) 107
FatI CATG 2 cut(s) 268, 448
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 235
Hin1II CATG 2 cut(s) 272, 452
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 3 cut(s) 127, 202, 289
Hpy8I GTNNAC 1 cut(s) 395
Hpy99I CGWCG 2 cut(s) 50, 240
HpyCH4III ACNGT 1 cut(s) 435
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 2 cut(s) 272, 452
HspAI GCGC 1 cut(s) 233
LpnPI CCDG 5 cut(s) 78, 184, 240, 268, 295
LweI GCATC 1 cut(s) 220
MabI ACCWGGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 166, 429
MboII GAAGA 2 cut(s) 329, 353
MluCI AATT 4 cut(s) 32, 275, 298, 336
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 31, 68, 324, 373
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 232
NlaIII CATG 2 cut(s) 272, 452
NlaIV GGNNCC 1 cut(s) 413
NspI RCATGY 1 cut(s) 452
PciI ACATGT 1 cut(s) 448
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 56
PscI ACATGT 1 cut(s) 448
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 283
SetI ASST 7 cut(s) 11, 67, 72, 102, 220, 284, 295
SexAI ACCWGGT 1 cut(s) 281
SfaNI GCATC 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 4 cut(s) 32, 275, 298, 336
SsiI CCGC 2 cut(s) 55, 355
StyD4I CCNGG 1 cut(s) 281
TaaI ACNGT 1 cut(s) 435
TaqI TCGA 2 cut(s) 48, 365
TasI AATT 4 cut(s) 32, 275, 298, 336
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TspDTI ATGAA 2 cut(s) 409, 414
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.