RLG00000006299

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008665
Physical Location & Seq
Reverse (-)
6107238 .. 6108928
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006299

Sequence Viewer

Length: 456 bp
ATGGAGAGCTACCGACAACAGAAGATACAGAAATTGGAGGAGTTCGTCGATGGCCGCCTCAAACCTGACCTTGTTCAAACCATCGCTCAACGGGACAAGGTGTTTGAAAAGCAAAAAAATTTCTCGGATTTGCGAAAGAACATTGAGAACTTGGAGAAAAATAGTGTAACCAGTCTTAGGACGATGGTAAATCTTGGTTCTGAAGTTTATATGCAAGCTGAAGTGCCAGATACGCGACGCATATTTGTAGATGTTGGACTTGGATTCCATGTGGAATTTACCTGGTCTGAAGCTTTGAATTACATATATCAAAGAGAAGAAAAGTTAGAGAGGGAAATTGAAGATTATACCAACCGCATTGCCTCGATTAAATCCCACATAAAGATGGTATGTGAAGGGATTCGGGAATTACTCCAGCTTCCAGCAGAGAAACCTGTGCCAGAGCTGAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

152

Amino Acids

17.87

Weight (kDa)

5.56

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 137 1.7e-21 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 235
AciI CCGC 2 cut(s) 55, 355
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 2 cut(s) 118, 275
AcuI CTGAAG 3 cut(s) 222, 240, 309
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 4 cut(s) 77, 107, 298, 341
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 5 cut(s) 9, 218, 293, 418, 445
AluI AGCT 5 cut(s) 9, 218, 293, 418, 445
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 2 cut(s) 118, 275
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 399
BccI CCATC 4 cut(s) 44, 89, 178, 379
BciT130I CCWGG 1 cut(s) 283
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 283
BmrFI CCNGG 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 54
BspACI CCGC 2 cut(s) 55, 355
BspANI GGCC 1 cut(s) 54
BspFNI CGCG 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 283
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstUI CGCG 1 cut(s) 235
BsuRI GGCC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 216
CseI GACGC 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 281
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 9, 54, 218, 293, 418, 445
CviKI_1 RGCY 6 cut(s) 9, 54, 218, 293, 418, 445
DdeI CTNAG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 52
Eco57I CTGAAG 3 cut(s) 222, 240, 309
EcoRII CCWGG 1 cut(s) 281
FaeI CATG 1 cut(s) 272
FaiI YATR 9 cut(s) 210, 212, 242, 270, 305, 307, 348, 380, 391
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 55
Fsp4HI GCNGC 1 cut(s) 55
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 264, 400
Hpy188I TCNGA 3 cut(s) 127, 202, 289
Hpy188III TCNNGA 1 cut(s) 404
Hpy99I CGWCG 2 cut(s) 50, 240
HpyAV CCTTC 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 1 cut(s) 272
LpnPI CCDG 8 cut(s) 78, 184, 240, 268, 295, 428, 435, 447
MabI ACCWGGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 3 cut(s) 34, 329, 353
MluCI AATT 6 cut(s) 32, 118, 275, 298, 336, 407
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 31, 68, 324, 373
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 232
NlaIII CATG 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 264, 400
PkrI GCNGC 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 283
SexAI ACCWGGT 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 6 cut(s) 32, 118, 275, 298, 336, 407
SsiI CCGC 2 cut(s) 55, 355
StyD4I CCNGG 1 cut(s) 281
TaqI TCGA 2 cut(s) 48, 365
TasI AATT 6 cut(s) 32, 118, 275, 298, 336, 407
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 264, 400
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
XapI RAATTY 2 cut(s) 118, 275
XmnI GAANNNNTTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.