MD13G1068100.v1.1

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0008665
Physical Location & Seq
Forward (+)
4670396 .. 4672791
2396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1068100.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGACATCTCCCGCCAAAACAAAATTCAGAAATTCGAGGAGTTTGTCGACCAACGCCTCAAACCTGACCTCGTCCGCGCCATTGCTCAACGGGACAAGGTGTTCGAGCAACAAAAAGTTTTCTCGGATTTGCGGAAGAACATTGAGAATTTGGAGAAAAATAGTGTGACCAGTCTTAGGAGTTTGGTGAATCTTGGCTCTGAAGTTTATATGCAAGCTGACGTGCCAGATACACGACGCATATTTGTAGATATTGGACTAGGATTTCATGTGGAGTTCACCTGGTCTGAAGCTTTAAATTACATATCTCAAAGAGAAGAAAAGTTAGCCAGGCAAGTTGAAGAGTGTACTAACCTTATTGCATCAATTAAAGCCCAGATAAAGCTGGTCTGCGAAGGGATTCGAGAATTACTCCAGCTTCCAGCAGAAGCAAAAACTGCCTCAGAGCGCATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

153

Amino Acids

17.64

Weight (kDa)

5.96

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 132 1.8e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 78
AciI CCGC 3 cut(s) 13, 76, 133
AcsI RAATTY 3 cut(s) 24, 32, 148
AcuI CTGAAG 2 cut(s) 222, 309
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 1 cut(s) 341
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 2 cut(s) 281, 329
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 4 cut(s) 218, 293, 385, 418
AluI AGCT 4 cut(s) 218, 293, 385, 418
ApoI RAATTY 3 cut(s) 24, 32, 148
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 2 cut(s) 80, 450
AsuHPI GGTGA 2 cut(s) 199, 271
BciT130I CCWGG 2 cut(s) 283, 331
BfaI CTAG 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 283, 331
BmgBI CACGTC 1 cut(s) 223
BmrFI CCNGG 2 cut(s) 283, 331
BmsI GCATC 1 cut(s) 371
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpmI CTGGAG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 2 cut(s) 283, 331
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 456
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 107
BspACI CCGC 3 cut(s) 13, 76, 133
BspCNI CTCAG 1 cut(s) 455
BspFNI CGCG 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 1 cut(s) 171
Bst2UI CCWGG 2 cut(s) 283, 331
Bst6I CTCTTC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 437
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 2 cut(s) 176, 442
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 80, 450
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNI CCWGG 2 cut(s) 283, 331
BstSCI CCNGG 2 cut(s) 281, 329
BstUI CGCG 1 cut(s) 78
BtrI CACGTC 1 cut(s) 223
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 2 cut(s) 80, 450
CseI GACGC 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 281
Csp6I GTAC 1 cut(s) 348
CviAII CATG 1 cut(s) 269
CviJI RGCY 7 cut(s) 198, 218, 293, 329, 374, 385, 418
CviKI_1 RGCY 7 cut(s) 198, 218, 293, 329, 374, 385, 418
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 2 cut(s) 176, 442
DraI TTTAAA 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco57I CTGAAG 2 cut(s) 222, 309
EcoRII CCWGG 2 cut(s) 281, 329
FaeI CATG 1 cut(s) 272
FaiI YATR 5 cut(s) 210, 212, 242, 270, 305
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 20
FblI GTMKAC 1 cut(s) 48
FspBI CTAG 1 cut(s) 260
GlaI GCGC 2 cut(s) 79, 449
GsuI CTGGAG 1 cut(s) 398
HgaI GACGC 1 cut(s) 246
HhaI GCGC 2 cut(s) 80, 450
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 2 cut(s) 78, 448
HinP1I GCGC 2 cut(s) 78, 448
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 190, 400
HphI GGTGA 2 cut(s) 199, 271
Hpy166II GTNNAC 3 cut(s) 49, 279, 348
Hpy188I TCNGA 5 cut(s) 30, 127, 202, 289, 445
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 3 cut(s) 49, 279, 348
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 389
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 214, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 2 cut(s) 176, 442
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 2 cut(s) 78, 448
LweI GCATC 1 cut(s) 371
MabI ACCWGGT 1 cut(s) 281
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 3 cut(s) 148, 329, 353
MluCI AATT 6 cut(s) 24, 32, 148, 298, 366, 407
MnlI CCTC 4 cut(s) 31, 68, 80, 451
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 2 cut(s) 296, 369
MspR9I CCNGG 2 cut(s) 283, 331
MvaI CCWGG 2 cut(s) 283, 331
MvnI CGCG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 437
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 190, 400
PflFI GACNNNGTC 1 cut(s) 71
Psp6I CCWGG 2 cut(s) 281, 329
PspGI CCWGG 2 cut(s) 281, 329
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SalI GTCGAC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 296, 369
ScrFI CCNGG 2 cut(s) 283, 331
SexAI ACCWGGT 1 cut(s) 281
SfaNI GCATC 1 cut(s) 371
Sse9I AATT 6 cut(s) 24, 32, 148, 298, 366, 407
SsiI CCGC 3 cut(s) 13, 76, 133
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 281, 329
TaiI ACGT 1 cut(s) 225
TaqI TCGA 4 cut(s) 36, 48, 105, 403
TasI AATT 6 cut(s) 24, 32, 148, 298, 366, 407
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 2 cut(s) 190, 400
Tru1I TTAA 2 cut(s) 296, 369
Tru9I TTAA 2 cut(s) 296, 369
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 257
Tth111I GACNNNGTC 1 cut(s) 71
XapI RAATTY 3 cut(s) 24, 32, 148
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.