Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012017.1

Orthogroup ID

OG0008665

Physical Location & Seq

Genomic Coordinates Reverse (-)

16541 .. 18220

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012017.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggagagctaccgacaacaaaagatccagaaattggaggagttcgtcgatggccgcctcaaacctgaccttgttcaaaccatcgctcaacgagacaaggtgtttgaaaagcaaaaagttttctcggatttgcgaaggaacattgagaacttggagaaaaatagtgtaaccagtcttaggacgatggtaaatcttggttctgaagtttatatgcaagctgaagtgccagatgcgcgacgcatatttgtagatgttggacttggattccatgtggaatttacctggtctgaagctttgaattatatatctcaaagagaagaaaagttagagagggaaattgaagattataccaaccgcattgcctcgattaaatcccacataaagatggtatgtgaagggattcgggaattactccagcttccagcagagaaacctgtgccagagctcaacttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

151

Amino Acids

17.78

Weight (kDa)

5.56

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26660 AT1G26660
fragaria_vesca	FvH4_4g30700
malus_domestica	MD13G1068100.v1.1 MD16G1066900.v1.1
prunus_persica	Prupe.1G280000_v2.0.a1
pyrus_communis	pycom13g05990 pycom16g05830
rosa_chinensis	RchiOBHm_Chr4g0439101
rosa_laevigata	RLG00000006299
rosa_multiflora	Rmu_sc0012017.1_g000005 Rmu_sc0015139.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380090
rosa_rugosa	Rorug04G0315700 Rorug04G0315800 Rorug04G0315800 Rorug04G0315800
rosa_samantha	Rh4AG366400 Rh4BG377900 Rh4CG392000 Rh4DG372500
rosa_wichuraiana	Rw0G007470 Rw0G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccII	CGCG	1 cut(s)	235
AciI	CCGC	2 cut(s)	55, 355
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	3 cut(s)	222, 240, 309
AfiI	CCNNNNNNNGG	2 cut(s)	34, 177
AgsI	TTSAA	4 cut(s)	77, 107, 298, 341
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	5 cut(s)	9, 218, 293, 418, 445
AluI	AGCT	5 cut(s)	9, 218, 293, 418, 445
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	87
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
Asp700I	GAANNNNTTC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	447
BccI	CCATC	4 cut(s)	44, 89, 178, 379
BciT130I	CCWGG	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	87
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	283
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 177
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	34, 177
BseMI	GCAATG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	235
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	34, 177
BsmAI	GTCTC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	55, 355
BspANI	GGCC	1 cut(s)	54
BspFNI	CGCG	1 cut(s)	235
BspPI	GGATC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	357
BsrI	ACTGG	1 cut(s)	171
BssMI	GATC	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	283
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	176
BstFNI	CGCG	1 cut(s)	235
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	1 cut(s)	27
BstMAI	GTCTC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	232
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstUI	CGCG	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	235
CseI	GACGC	1 cut(s)	246
CsiI	ACCWGGT	1 cut(s)	281
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	6 cut(s)	9, 54, 218, 293, 418, 445
CviKI_1	RGCY	6 cut(s)	9, 54, 218, 293, 418, 445
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	447
Eco53kI	GAGCTC	1 cut(s)	445
Eco57I	CTGAAG	3 cut(s)	222, 240, 309
EcoICRI	GAGCTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	281
EcoT38I	GRGCYC	1 cut(s)	447
FaeI	CATG	1 cut(s)	272
FaiI	YATR	9 cut(s)	210, 212, 242, 270, 303, 305, 348, 380, 391
FatI	CATG	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	55
FriOI	GRGCYC	1 cut(s)	447
Fsp4HI	GCNGC	1 cut(s)	55
GlaI	GCGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	398
HaeIII	GGCC	1 cut(s)	54
HgaI	GACGC	1 cut(s)	246
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	2 cut(s)	264, 400
Hpy188I	TCNGA	3 cut(s)	127, 202, 289
Hpy188III	TCNNGA	2 cut(s)	28, 404
Hpy99I	CGWCG	2 cut(s)	50, 240
HpyAV	CCTTC	2 cut(s)	129, 389
HpyCH4V	TGCA	1 cut(s)	214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	232
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	9 cut(s)	41, 78, 184, 240, 268, 295, 428, 435, 447
LweI	GCATC	1 cut(s)	220
MabI	ACCWGGT	1 cut(s)	281
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	329, 353
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	5 cut(s)	32, 275, 298, 336, 407
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	4 cut(s)	31, 68, 324, 373
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	1 cut(s)	369
MslI	CAYNNNNRTG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	232
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	264, 400
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	281
PsuI	RGATCY	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	447
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	24
ScrFI	CCNGG	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	447
SexAI	ACCWGGT	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	5 cut(s)	32, 275, 298, 336, 407
SsiI	CCGC	2 cut(s)	55, 355
SstI	GAGCTC	1 cut(s)	447
StyD4I	CCNGG	1 cut(s)	281
TaqI	TCGA	2 cut(s)	48, 365
TasI	AATT	5 cut(s)	32, 275, 298, 336, 407
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	2 cut(s)	264, 400
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
Van91I	CCANNNNNTGG	1 cut(s)	34
XapI	RAATTY	1 cut(s)	275
XmnI	GAANNNNTTC	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.