Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008665

Physical Location & Seq

Genomic Coordinates Forward (+)

3932271 .. 3934315

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g05990.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAGACGTTTTGGGCTTGGGCCTACCCAAATCGGGGACGCCTTATACGACGTCGTTGGATCAAAGCCTATCATCCCTCCAGCTGCATCGTCGTTTACCTCCAGAGACCGACTTTCTGTGTGCAGAGAAGCAAGCGAGCTCTGCAAATCCAGTCCAGTCTAGCGCTCATGGACATCTCCCGCCAAAAAAAAATTCAGAAATTCGAGGAGTTCGTCGACCAACGCCTCAAACCAGACCTCGTCCGCGCCATTGCTCAACGGGACAAGGTGTTCGAGCAACAAAAAGTTTTCTCGGATTTGCGGAAGAACATTGAGAATTTGGAGAAAAATAGTGTGACCAGTCTTAGGACTTTGGTTAATCTTGGCTCTGAAGTTTATATGCAAGCTGACGTGCCAGATACACGACGCATATTTGTAGATATTGGACTAGGATTTCATGTGGAGTTCACCTGGTCTGAAGCTTTAAATTACATATCTCAAAGAGAAGAAAAGTTAGCCAGGCAAGTTGAAGAGTGTACTAACCTTATTGCATCAATTAAAGCTCAGATAAAGCTGGTCTGCGAAGGGATTCGAGAATTGCTCCAGCTTCCAGCAGAAGCAAAAACTGCCTCAGAGCGCATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

209

Amino Acids

24.41

Weight (kDa)

9.69

Isoelectric Point (pI)

52.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26660 AT1G26660
fragaria_vesca	FvH4_4g30700
malus_domestica	MD13G1068100.v1.1 MD16G1066900.v1.1
prunus_persica	Prupe.1G280000_v2.0.a1
pyrus_communis	pycom13g05990 pycom16g05830
rosa_chinensis	RchiOBHm_Chr4g0439101
rosa_laevigata	RLG00000006299
rosa_multiflora	Rmu_sc0012017.1_g000005 Rmu_sc0015139.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380090
rosa_rugosa	Rorug04G0315700 Rorug04G0315800 Rorug04G0315800 Rorug04G0315800
rosa_samantha	Rh4AG366400 Rh4BG377900 Rh4CG392000 Rh4DG372500
rosa_wichuraiana	Rw0G007470 Rw0G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	216
AccII	CGCG	1 cut(s)	246
AciI	CCGC	3 cut(s)	181, 244, 301
AclWI	GGATC	1 cut(s)	68
AcsI	RAATTY	3 cut(s)	192, 200, 316
AcuI	CTGAAG	2 cut(s)	390, 477
AcyI	GRCGYC	2 cut(s)	40, 52
AfaI	GTAC	1 cut(s)	517
AfeI	AGCGCT	1 cut(s)	165
AfiI	CCNNNNNNNGG	3 cut(s)	34, 35, 345
AgsI	TTSAA	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	2 cut(s)	449, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AloI	GAACNNNNNNTCC	2 cut(s)	254, 286
AluBI	AGCT	7 cut(s)	84, 140, 386, 461, 542, 553, 586
AluI	AGCT	7 cut(s)	84, 140, 386, 461, 542, 553, 586
Alw21I	GWGCWC	1 cut(s)	142
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	68
Aor51HI	AGCGCT	1 cut(s)	165
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	3 cut(s)	192, 200, 316
ArsI	GACNNNNNNTTYG	2 cut(s)	254, 286
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	3 cut(s)	166, 248, 618
AspS9I	GGNCC	1 cut(s)	21
AsuHPI	GGTGA	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	142
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	451, 499
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	2 cut(s)	161, 428
BfoI	RGCGCY	1 cut(s)	167
BisI	GCNGC	1 cut(s)	85
BlsI	GCNGC	1 cut(s)	86
Bme1390I	CCNGG	2 cut(s)	451, 499
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	21
BmrFI	CCNGG	2 cut(s)	451, 499
BmsI	GCATC	2 cut(s)	96, 539
BpiI	GAAGAC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	564, 596
BpmI	CTGGAG	3 cut(s)	64, 86, 566
BsaHI	GRCGYC	2 cut(s)	40, 52
BsaI	GGTCTC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 35, 345
Bse1I	ACTGG	3 cut(s)	151, 156, 339
Bse3DI	GCAATG	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	451, 499
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	34, 35, 345
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	557, 624
BseNI	ACTGG	3 cut(s)	151, 156, 339
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	143
Bsh1236I	CGCG	1 cut(s)	246
BshFI	GGCC	1 cut(s)	23
BsiHKAI	GWGCWC	1 cut(s)	142
BslFI	GGGAC	2 cut(s)	51, 275
BslI	CCNNNNNNNGG	3 cut(s)	34, 35, 345
BsmAI	GTCTC	1 cut(s)	100
BsmFI	GGGAC	2 cut(s)	51, 275
BsnI	GGCC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	3 cut(s)	181, 244, 301
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	556, 623
BspFNI	CGCG	1 cut(s)	246
BspPI	GGATC	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	151, 156, 339
BssMI	GATC	1 cut(s)	60
BssNI	GRCGYC	2 cut(s)	40, 52
Bst2UI	CCWGG	2 cut(s)	451, 499
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	2 cut(s)	40, 52
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	3 cut(s)	134, 138, 384
BstDEI	CTNAG	3 cut(s)	344, 543, 610
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	3 cut(s)	166, 248, 618
BstKTI	GATC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	1 cut(s)	60
BstMWI	GCNNNNNNNGC	2 cut(s)	142, 605
BstNI	CCWGG	2 cut(s)	451, 499
BstSCI	CCNGG	2 cut(s)	449, 497
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	23
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	134, 138, 384
CfoI	GCGC	3 cut(s)	166, 248, 618
Cfr13I	GGNCC	1 cut(s)	21
CseI	GACGC	2 cut(s)	48, 414
CsiI	ACCWGGT	1 cut(s)	449
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	2 cut(s)	169, 437
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	3 cut(s)	344, 543, 610
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
DraI	TTTAAA	1 cut(s)	465
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	142
Eco31I	GGTCTC	1 cut(s)	100
Eco47III	AGCGCT	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	140
Eco57I	CTGAAG	2 cut(s)	390, 477
EcoICRI	GAGCTC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	449, 497
EcoT38I	GRGCYC	1 cut(s)	142
FaeI	CATG	2 cut(s)	172, 440
FaiI	YATR	7 cut(s)	47, 170, 378, 380, 410, 438, 473
FaqI	GGGAC	2 cut(s)	51, 275
FatI	CATG	2 cut(s)	168, 436
FauI	CCCGC	1 cut(s)	188
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	1 cut(s)	85
FokI	GGATG	1 cut(s)	60
FriOI	GRGCYC	1 cut(s)	142
Fsp4HI	GCNGC	1 cut(s)	85
FspBI	CTAG	2 cut(s)	161, 428
GlaI	GCGC	3 cut(s)	165, 247, 617
GluI	GCNGC	1 cut(s)	85
GsuI	CTGGAG	3 cut(s)	64, 86, 566
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	23
HgaI	GACGC	2 cut(s)	48, 414
HhaI	GCGC	3 cut(s)	166, 248, 618
Hin1I	GRCGYC	2 cut(s)	40, 52
Hin1II	CATG	2 cut(s)	172, 440
Hin6I	GCGC	3 cut(s)	164, 246, 616
HinP1I	GCGC	3 cut(s)	164, 246, 616
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	1 cut(s)	568
HphI	GGTGA	1 cut(s)	439
Hpy166II	GTNNAC	4 cut(s)	97, 217, 447, 516
Hpy188I	TCNGA	6 cut(s)	198, 295, 370, 457, 546, 613
Hpy188III	TCNNGA	2 cut(s)	103, 572
Hpy8I	GTNNAC	4 cut(s)	97, 217, 447, 516
Hpy99I	CGWCG	5 cut(s)	54, 57, 95, 218, 408
HpyAV	CCTTC	1 cut(s)	557
HpyCH4IV	ACGT	3 cut(s)	8, 52, 390
HpyCH4V	TGCA	5 cut(s)	87, 124, 145, 382, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	142, 605
HpyF3I	CTNAG	3 cut(s)	344, 543, 610
HpySE526I	ACGT	3 cut(s)	8, 52, 390
Hsp92I	GRCGYC	2 cut(s)	40, 52
Hsp92II	CATG	2 cut(s)	172, 440
HspAI	GCGC	3 cut(s)	164, 246, 616
Kzo9I	GATC	1 cut(s)	60
LmnI	GCTCC	1 cut(s)	585
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	96, 539
MabI	ACCWGGT	1 cut(s)	449
MaeI	CTAG	2 cut(s)	161, 428
MaeII	ACGT	3 cut(s)	8, 52, 390
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	4 cut(s)	16, 316, 497, 521
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	6 cut(s)	192, 200, 316, 466, 534, 575
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	6 cut(s)	88, 110, 199, 236, 248, 619
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	3 cut(s)	357, 464, 537
MspA1I	CMGCKG	1 cut(s)	84
MspR9I	CCNGG	2 cut(s)	451, 499
MvaI	CCWGG	2 cut(s)	451, 499
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	142, 605
NdeII	GATC	1 cut(s)	60
NlaIII	CATG	2 cut(s)	172, 440
NmuCI	GTSAC	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	2 cut(s)	46, 210
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	568
PflFI	GACNNNGTC	1 cut(s)	239
PkrI	GCNGC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	449, 497
PspGI	CCWGG	2 cut(s)	449, 497
PspPI	GGNCC	1 cut(s)	21
PsyI	GACNNNGTC	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	84
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SacI	GAGCTC	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	215
SaqAI	TTAA	3 cut(s)	357, 464, 537
SatI	GCNGC	1 cut(s)	85
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	21
ScrFI	CCNGG	2 cut(s)	451, 499
SduI	GDGCHC	1 cut(s)	142
SexAI	ACCWGGT	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	96, 539
Sse9I	AATT	6 cut(s)	192, 200, 316, 466, 534, 575
SsiI	CCGC	3 cut(s)	181, 244, 301
SspMI	CTAG	2 cut(s)	161, 428
SstI	GAGCTC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	449, 497
TaiI	ACGT	3 cut(s)	11, 55, 393
TaqI	TCGA	4 cut(s)	204, 216, 273, 571
TaqII	GACCGA	1 cut(s)	124
TasI	AATT	6 cut(s)	192, 200, 316, 466, 534, 575
TatI	WGTACW	1 cut(s)	515
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	3 cut(s)	357, 464, 537
Tru9I	TTAA	3 cut(s)	357, 464, 537
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	1 cut(s)	84
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	17, 425
Tth111I	GACNNNGTC	1 cut(s)	239
XapI	RAATTY	3 cut(s)	192, 200, 316
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	2 cut(s)	161, 428
ZraI	GACGTC	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.