MD16G1066900.v1.1

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0008665
Physical Location & Seq
Forward (+)
4714520 .. 4716545
2026 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1066900.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGACATCTCCCGCCAAAACAAAATTCAGAAATTCGAGGATTTCGTGGACCAACGCCTCAAACCAGACCTCGTTCGCGCCATTGCTCAACGGGACAAGGTGTTCGAGCAACAAAAAGTTTTCTCGGATTTGCGGAAGAACATAGAGAATTTGGAGAAAAATAGTGTGACCAGTCTTAGGACTTTGGTTAATCTTGGCTCTGAAGTGTATATGCAAGCTGATGTGCCAGATACACGACGCATATTTGTGGATATTGGACTGGGATTCCATGTGGAGTTCACCTGGTCTGAAGCTTTGAATTACATATCTCAAAGAGAAGAAAAGTTGGCCAGGCAAGTTGAAGAGTGTACTAACCTTATTGCGTCCATTAAAGCTCAGATAAAGCTGGTATGCGAAGGGATTCGAGAGATACTCCAGCTTCCAGCAGAGAAGAAACCTGCCTCAGAGCGCATTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

153

Amino Acids

17.7

Weight (kDa)

6.62

Isoelectric Point (pI)

42.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 131 4.1e-21 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 445
AccII CGCG 1 cut(s) 78
AciI CCGC 2 cut(s) 13, 133
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 3 cut(s) 24, 32, 148
AcuI CTGAAG 2 cut(s) 222, 309
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 2 cut(s) 298, 341
AjnI CCWGG 2 cut(s) 281, 329
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 5 cut(s) 218, 293, 374, 385, 418
AluI AGCT 5 cut(s) 218, 293, 374, 385, 418
AoxI GGCC 1 cut(s) 327
ApoI RAATTY 3 cut(s) 24, 32, 148
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 2 cut(s) 80, 450
AspS9I GGNCC 1 cut(s) 49
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 49
BalI TGGCCA 1 cut(s) 329
BciT130I CCWGG 2 cut(s) 283, 331
BfuAI ACCTGC 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 283, 331
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 1 cut(s) 49
BmrFI CCNGG 2 cut(s) 283, 331
BmrI ACTGGG 1 cut(s) 269
BmuI ACTGGG 1 cut(s) 269
BplI GAGNNNNNCTC 2 cut(s) 396, 428
BpmI CTGGAG 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 2 cut(s) 171, 264
Bse3DI GCAATG 1 cut(s) 81
BseBI CCWGG 2 cut(s) 283, 331
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 389, 456
BseNI ACTGG 2 cut(s) 171, 264
Bsh1236I CGCG 1 cut(s) 78
BshFI GGCC 1 cut(s) 329
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 329
BspACI CCGC 2 cut(s) 13, 133
BspANI GGCC 1 cut(s) 329
BspCNI CTCAG 2 cut(s) 388, 455
BspFNI CGCG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 445
BsrDI GCAATG 1 cut(s) 81
BsrI ACTGG 2 cut(s) 171, 264
Bst2UI CCWGG 2 cut(s) 283, 331
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 3 cut(s) 176, 375, 442
BstFNI CGCG 1 cut(s) 78
BstHHI GCGC 2 cut(s) 80, 450
BstNI CCWGG 2 cut(s) 283, 331
BstSCI CCNGG 2 cut(s) 281, 329
BstUI CGCG 1 cut(s) 78
BsuRI GGCC 1 cut(s) 329
BveI ACCTGC 1 cut(s) 445
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 2 cut(s) 80, 450
Cfr13I GGNCC 1 cut(s) 49
CseI GACGC 2 cut(s) 246, 351
CsiI ACCWGGT 1 cut(s) 281
Csp6I GTAC 1 cut(s) 348
CviAII CATG 1 cut(s) 269
CviJI RGCY 7 cut(s) 198, 218, 293, 329, 374, 385, 418
CviKI_1 RGCY 7 cut(s) 198, 218, 293, 329, 374, 385, 418
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 3 cut(s) 176, 375, 442
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 49
Eco57I CTGAAG 2 cut(s) 222, 309
EcoRII CCWGG 2 cut(s) 281, 329
FaeI CATG 1 cut(s) 272
FaiI YATR 7 cut(s) 143, 210, 212, 242, 270, 305, 391
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 268
FauI CCCGC 1 cut(s) 20
GlaI GCGC 2 cut(s) 79, 449
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 329
HgaI GACGC 2 cut(s) 246, 351
HhaI GCGC 2 cut(s) 80, 450
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 2 cut(s) 78, 448
HinP1I GCGC 2 cut(s) 78, 448
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 264, 400
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 3 cut(s) 49, 279, 348
Hpy188I TCNGA 6 cut(s) 30, 127, 202, 289, 378, 445
Hpy188III TCNNGA 1 cut(s) 404
Hpy8I GTNNAC 3 cut(s) 49, 279, 348
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 214
HpyF3I CTNAG 3 cut(s) 176, 375, 442
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 2 cut(s) 78, 448
MabI ACCWGGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 4 cut(s) 148, 329, 353, 442
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 4 cut(s) 24, 32, 148, 298
MluNI TGGCCA 1 cut(s) 329
MnlI CCTC 4 cut(s) 31, 68, 80, 451
Mox20I TGGCCA 1 cut(s) 329
MroXI GAANNNNTTC 1 cut(s) 399
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 189, 369
MslI CAYNNNNRTG 1 cut(s) 245
Msp20I TGGCCA 1 cut(s) 329
MspR9I CCNGG 2 cut(s) 283, 331
MvaI CCWGG 2 cut(s) 283, 331
MvnI CGCG 1 cut(s) 78
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 264, 400
Psp6I CCWGG 2 cut(s) 281, 329
PspGI CCWGG 2 cut(s) 281, 329
PspPI GGNCC 1 cut(s) 49
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
RseI CAYNNNNRTG 1 cut(s) 245
SaqAI TTAA 2 cut(s) 189, 369
Sau96I GGNCC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 283, 331
SexAI ACCWGGT 1 cut(s) 281
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 245
Sse9I AATT 4 cut(s) 24, 32, 148, 298
SsiI CCGC 2 cut(s) 13, 133
StyD4I CCNGG 2 cut(s) 281, 329
TaqI TCGA 3 cut(s) 36, 105, 403
TasI AATT 4 cut(s) 24, 32, 148, 298
TatI WGTACW 1 cut(s) 347
TfiI GAWTC 2 cut(s) 264, 400
Tru1I TTAA 2 cut(s) 189, 369
Tru9I TTAA 2 cut(s) 189, 369
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 3 cut(s) 24, 32, 148
XmnI GAANNNNTTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.