Rh4DG372500

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008665
Physical Location & Seq
Forward (+)
59048041 .. 59049726
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG372500.1

Sequence Viewer

Length: 456 bp
ATGGAGAGCTACCGACAACAAAAGATACAGAAATTGGAGGAGTTCGTCGATGGCCGCCTCAAACCTGACCTTGTTCAAACCATCGCTCAACGAGACAAGGTGTTTGAAAAGCAAAAAGTTTTCTCGGATTTGCGAAAGAACATTGAGAACTTGGAGAAAAATAGTGTAACCAGTCTTAGGACGATGGTAAATCTTGGTTCTGAAGTTTATATGCAAGCTGAAGTGCCAGATGCGCGACGCATATTTGTAGATGTTGGACTTGGATTCCATGTGGAATTTACCTGGTCTGAAGCTTTGAATTATATATCTCGAAGAGAAGAAAAGTTAGAGAGGGAAATTGAAGATTATACCAACCGCATTGCCTCGATTAAATCCCACATAAAGATGGTATGTGAAGGGATTCGGGAATTACTCGAGCTTCCAGCAGAGAAACCTGTGCCAGAGCTCAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

151

Amino Acids

17.78

Weight (kDa)

5.58

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 131 1.8e-20 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 235
AciI CCGC 2 cut(s) 55, 355
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 3 cut(s) 222, 240, 309
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 4 cut(s) 77, 107, 298, 341
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 5 cut(s) 9, 218, 293, 418, 445
AluI AGCT 5 cut(s) 9, 218, 293, 418, 445
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 87
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 275
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 399
AspLEI GCGC 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 413
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BccI CCATC 4 cut(s) 44, 89, 178, 379
BciT130I CCWGG 1 cut(s) 283
BcoDI GTCTC 1 cut(s) 87
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 283
BmeT110I CYCGRG 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 357
BseBI CCWGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 447
BsiHKCI CYCGRG 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 87
BsnI GGCC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 447
BspACI CCGC 2 cut(s) 55, 355
BspANI GGCC 1 cut(s) 54
BspFNI CGCG 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 357
BsrI ACTGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 307
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 87
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstUI CGCG 1 cut(s) 235
BsuRI GGCC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 216
CfoI GCGC 1 cut(s) 235
CseI GACGC 1 cut(s) 246
CsiI ACCWGGT 1 cut(s) 281
CviAII CATG 1 cut(s) 269
CviJI RGCY 6 cut(s) 9, 54, 218, 293, 418, 445
CviKI_1 RGCY 6 cut(s) 9, 54, 218, 293, 418, 445
DdeI CTNAG 1 cut(s) 176
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 307
EarI CTCTTC 1 cut(s) 307
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 3 cut(s) 222, 240, 309
Eco88I CYCGRG 1 cut(s) 413
EcoICRI GAGCTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 447
FaeI CATG 1 cut(s) 272
FaiI YATR 9 cut(s) 210, 212, 242, 270, 303, 305, 348, 380, 391
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 246
HhaI GCGC 1 cut(s) 235
Hin1II CATG 1 cut(s) 272
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 264, 400
Hpy188I TCNGA 3 cut(s) 127, 202, 289
Hpy188III TCNNGA 2 cut(s) 309, 404
Hpy99I CGWCG 2 cut(s) 50, 240
HpyAV CCTTC 1 cut(s) 389
HpyCH4V TGCA 1 cut(s) 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 1 cut(s) 272
HspAI GCGC 1 cut(s) 233
LpnPI CCDG 7 cut(s) 78, 184, 240, 268, 295, 435, 447
LweI GCATC 1 cut(s) 220
MabI ACCWGGT 1 cut(s) 281
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 3 cut(s) 324, 329, 353
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 5 cut(s) 32, 275, 298, 336, 407
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 31, 68, 324, 373
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 235
MwoI GCNNNNNNNGC 1 cut(s) 232
NlaIII CATG 1 cut(s) 272
PaeR7I CTCGAG 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 264, 400
PkrI GCNGC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspXI VCTCGAGB 1 cut(s) 413
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 447
SexAI ACCWGGT 1 cut(s) 281
SfaNI GCATC 1 cut(s) 220
Sfr274I CTCGAG 1 cut(s) 413
SlaI CTCGAG 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
Sse9I AATT 5 cut(s) 32, 275, 298, 336, 407
SsiI CCGC 2 cut(s) 55, 355
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 281
TaqI TCGA 4 cut(s) 48, 310, 365, 414
TasI AATT 5 cut(s) 32, 275, 298, 336, 407
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 264, 400
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
XapI RAATTY 1 cut(s) 275
XhoI CTCGAG 1 cut(s) 413
XmnI GAANNNNTTC 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.