Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008665

Physical Location & Seq

Genomic Coordinates Forward (+)

49031306 .. 49034362

Gene Structure 3057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0315800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGATGTGGGAGAAACAAAATGTTCCTTCAAGTACGGCAAGCCTCCGTGGATTTTCAGAGGCAGAGCATTGTATCAACTCCATTTGGTCAAGGCAGCGACTATTCGAGCATGCATCCCTAAAGAGTTCAGATTGGTTGAAGCATTTGGATATACTCTTGGCGGGTTTTTTCTTGCTAACTATGATGACAGCCCAGCTGGAGTCTTTGATGAGCTTGTTGTGATTGCTGGACTTATATGGAGCCCTCCAACGTCTTGCGCATGGGCAGCAAAGGTACTTGTGAATAGCAAAGAAGCTTGTGATCATGGGCGAAAGGAAGTAGGCCTTCCAAGTCAAGTTGCAAGGTTTTCTAAGAGAATTACAGCAGTTTCAAGGAAACCAAAGACCAAACAAAGTGAATTTCTAAACTTAATTGGTATGAAGGGTGGTTTCTCTGATCCACGAGAGCAGGTGAATGTTCAAGTGACTGAAATCATGGGTCAAGCCTCAAAAGATACCTGTAATGTCAACCTTACCACTTTCGTGCCTGCATTGGACATTAACAAGTGGATGGGACCAGCAATCAAAATGTCACTTCCAAGTTTTAGCGGTCGTACAGAGTATTATCCTGACCTTCTTAAGTACTCTTGCCAGATCGACTGCAGGGTGCGAGTAGTGCATCCAGCTAAAGTATCGGAGCCATCTCCTGTGCCATCGAATGAGAACGAGAACAAACAATGTTCAGAAATTCATAGCTGCAATACGCCTCCTGTGCCATCGAATGAGAACGAGAACAAACAATGTTCAGAAATTCATAGTTGCAATACGCAGAATCAAGCAACTAAAGAATTCATGGACAATGAGCAGAACCTTACCAGAGCCGTGATGCTATCAAAGCCCATTTTGGCATTGGAGTTCAGTTCTATGAAAATGCAGGTTGAAGCTCCGGTTGTAGTTTCCAACTACTTTAAGAACTCTTTAGCAACCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

323

Amino Acids

35.89

Weight (kDa)

8.56

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26660 AT1G26660
fragaria_vesca	FvH4_4g30700
malus_domestica	MD13G1068100.v1.1 MD16G1066900.v1.1
prunus_persica	Prupe.1G280000_v2.0.a1
pyrus_communis	pycom13g05990 pycom16g05830
rosa_chinensis	RchiOBHm_Chr4g0439101
rosa_laevigata	RLG00000006299
rosa_multiflora	Rmu_sc0012017.1_g000005 Rmu_sc0015139.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380090
rosa_rugosa	Rorug04G0315700 Rorug04G0315800 Rorug04G0315800 Rorug04G0315800
rosa_samantha	Rh4AG366400 Rh4BG377900 Rh4CG392000 Rh4DG372500
rosa_wichuraiana	Rw0G007470 Rw0G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	439
Acc16I	TGCGCA	1 cut(s)	259
Acc36I	ACCTGC	2 cut(s)	439, 904
AciI	CCGC	2 cut(s)	162, 588
AclWI	GGATC	1 cut(s)	431
AcsI	RAATTY	4 cut(s)	398, 726, 789, 827
AfaI	GTAC	4 cut(s)	35, 276, 595, 623
AflII	CTTAAG	1 cut(s)	617
AgsI	TTSAA	5 cut(s)	31, 140, 372, 461, 920
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	6 cut(s)	197, 214, 296, 665, 735, 923
AluI	AGCT	6 cut(s)	197, 214, 296, 665, 735, 923
AlwI	GGATC	1 cut(s)	431
AoxI	GGCC	1 cut(s)	322
ApeKI	GCWGC	3 cut(s)	95, 266, 735
ApoI	RAATTY	4 cut(s)	398, 726, 789, 827
AspLEI	GCGC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	245
BauI	CACGAG	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	107, 278, 722
BccI	CCATC	4 cut(s)	544, 688, 700, 763
BceAI	ACGGC	2 cut(s)	52, 845
BclI	TGATCA	1 cut(s)	301
BfmI	CTRYAG	1 cut(s)	640
BfrI	CTTAAG	1 cut(s)	617
BfuAI	ACCTGC	2 cut(s)	439, 904
BisI	GCNGC	3 cut(s)	96, 267, 736
BlsI	GCNGC	3 cut(s)	97, 268, 737
BmcAI	AGTACT	1 cut(s)	623
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	3 cut(s)	242, 555, 678
BmsI	GCATC	3 cut(s)	123, 667, 855
BpmI	CTGGAG	1 cut(s)	219
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	925
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	4 cut(s)	10, 114, 555, 658
BseXI	GCAGC	3 cut(s)	107, 278, 722
BseYI	CCCAGC	1 cut(s)	193
Bsh1285I	CGRYCG	1 cut(s)	592
BshFI	GGCC	1 cut(s)	324
BsiEI	CGRYCG	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	926
BslFI	GGGAC	1 cut(s)	567
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	301, 436, 633
BspACI	CCGC	2 cut(s)	162, 588
BspANI	GGCC	1 cut(s)	324
BspLI	GGNNCC	3 cut(s)	242, 555, 678
BspMAI	CTGCAG	1 cut(s)	644
BspMI	ACCTGC	2 cut(s)	439, 904
BspPI	GGATC	1 cut(s)	431
BspTI	CTTAAG	1 cut(s)	617
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	301, 436, 633
BssSI	CACGAG	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	441
BstAFI	CTTAAG	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	41, 112, 528
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	4 cut(s)	10, 114, 555, 658
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	304, 439, 636
BstMBI	GATC	3 cut(s)	301, 436, 633
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	4 cut(s)	266, 655, 751, 874
BstNSI	RCATGY	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	640
BstV1I	GCAGC	3 cut(s)	107, 278, 722
BsuRI	GGCC	1 cut(s)	324
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	10, 114, 555, 658
BveI	ACCTGC	2 cut(s)	439, 904
Cac8I	GCNNGC	3 cut(s)	41, 112, 528
CfoI	GCGC	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	554
Csp6I	GTAC	4 cut(s)	34, 275, 594, 622
CviAII	CATG	5 cut(s)	111, 261, 305, 475, 832
CviQI	GTAC	4 cut(s)	34, 275, 594, 622
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	3 cut(s)	303, 438, 635
DpnII	GATC	3 cut(s)	301, 436, 633
Eco147I	AGGCCT	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	827
EcoT22I	ATGCAT	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	5 cut(s)	114, 264, 308, 478, 835
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	5 cut(s)	110, 260, 304, 474, 831
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	96, 267, 736
FokI	GGATG	4 cut(s)	17, 101, 562, 645
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	3 cut(s)	96, 267, 736
FspI	TGCGCA	1 cut(s)	259
GlaI	GCGC	1 cut(s)	259
GluI	GCNGC	3 cut(s)	96, 267, 736
GsaI	CCCAGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	926
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	5 cut(s)	114, 264, 308, 478, 835
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	294
HinfI	GANTC	2 cut(s)	201, 811
HpaII	CCGG	1 cut(s)	926
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	6 cut(s)	59, 131, 436, 676, 724, 787
Hpy188III	TCNNGA	2 cut(s)	608, 969
Hpy8I	GTNNAC	1 cut(s)	508
HpyAV	CCTTC	4 cut(s)	37, 335, 415, 623
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	8 cut(s)	114, 341, 530, 642, 658, 738, 801, 913
HpyF10VI	GCNNNNNNNGC	4 cut(s)	266, 655, 751, 874
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	5 cut(s)	114, 264, 308, 478, 835
HspAI	GCGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	3 cut(s)	301, 436, 633
LmnI	GCTCC	3 cut(s)	240, 676, 928
Lsp1109I	GCAGC	3 cut(s)	107, 278, 722
LweI	GCATC	3 cut(s)	123, 667, 855
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	2 cut(s)	463, 570
MalI	GATC	3 cut(s)	303, 438, 635
MboI	GATC	3 cut(s)	301, 436, 633
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	6 cut(s)	357, 398, 411, 726, 789, 827
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	2 cut(s)	272, 963
MnlI	CCTC	5 cut(s)	53, 54, 255, 496, 756
Mph1103I	ATGCAT	1 cut(s)	116
MseI	TTAA	4 cut(s)	410, 540, 618, 948
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	617
MspI	CCGG	1 cut(s)	926
MwoI	GCNNNNNNNGC	4 cut(s)	266, 655, 751, 874
NdeII	GATC	3 cut(s)	301, 436, 633
NlaIII	CATG	5 cut(s)	114, 264, 308, 478, 835
NlaIV	GGNNCC	3 cut(s)	242, 555, 678
NmuCI	GTSAC	2 cut(s)	463, 570
NsbI	TGCGCA	1 cut(s)	259
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	114
OliI	CACNNNNGTG	1 cut(s)	521
PaeI	GCATGC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	97, 268, 737
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	193
PspN4I	GGNNCC	3 cut(s)	242, 555, 678
PspPI	GGNCC	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	644
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	4 cut(s)	35, 276, 595, 623
RsaNI	GTAC	4 cut(s)	34, 275, 594, 622
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	4 cut(s)	410, 540, 618, 948
SatI	GCNGC	3 cut(s)	96, 267, 736
Sau3AI	GATC	3 cut(s)	301, 436, 633
Sau96I	GGNCC	1 cut(s)	554
ScaI	AGTACT	1 cut(s)	623
SchI	GAGTC	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	3 cut(s)	123, 667, 855
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	114
Sse9I	AATT	6 cut(s)	357, 398, 411, 726, 789, 827
SseBI	AGGCCT	1 cut(s)	324
SsiI	CCGC	2 cut(s)	162, 588
StuI	AGGCCT	1 cut(s)	324
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	4 cut(s)	106, 636, 695, 758
TasI	AATT	6 cut(s)	357, 398, 411, 726, 789, 827
TatI	WGTACW	1 cut(s)	621
TfiI	GAWTC	1 cut(s)	811
Tru1I	TTAA	4 cut(s)	410, 540, 618, 948
Tru9I	TTAA	4 cut(s)	410, 540, 618, 948
TseFI	GTSAC	2 cut(s)	463, 570
TseI	GCWGC	3 cut(s)	95, 266, 735
Tsp45I	GTSAC	2 cut(s)	463, 570
TspDTI	ATGAA	5 cut(s)	434, 719, 782, 820, 920
TspGWI	ACGGA	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	617
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	4 cut(s)	398, 726, 789, 827
XceI	RCATGY	1 cut(s)	114
XcmI	CCANNNNNNNNNTGG	1 cut(s)	886
ZrmI	AGTACT	1 cut(s)	623
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.