Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008665

Physical Location & Seq

Genomic Coordinates Forward (+)

3737426 .. 3738964

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g05830.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTGCACATATTTTTGGGCTTGGGCCTGGACCCCGATAAGCCATCCCTCCTTCTGCATCGTTGTTTACCTCCAGAGTCGGAGACCGACTTTCTGCGTGCAAAGAAGTCTGCTAATCCAGTCTGATCCAGGGCTCATGGACATCTCCCGCCAAAACAAAATTCAGAAATTTGAGGATTTCGTGGACCAACGCCTCAAACCAGACCTCGTTCGCGCCATTGCTCAACGGGACAAGGTGTTCGAGCAACAAAAAGTTTTCTCGGATTTGCGGAAGAACATAGAGAATTTGGAGAAAAATAGTGCGACCAGTCTTAGGACCTTGGTTAATCTTGGCTCCGAAGTGTATATGCAAGCTGATGTGCCAGATACACGACGCATATTTGTGGATATTGGACTAGGATTCCATGTGGAGTTCACCTGGTCTGAAGCTTTGAATTACATATCTCAAAGAGAAGAAAAGTTGGCCAGGCAAGTTGAAGAGTGTACTAACCTTATTGCGTCAATTAAAGCTCAGATAAAGCTGGTATGTGAAGGGATTCGAGAGTTACTCCAGCTTCCGGCAGAGAAGAAACCTGCCTCAGAGCGCATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

198

Amino Acids

22.96

Weight (kDa)

8.26

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26660 AT1G26660
fragaria_vesca	FvH4_4g30700
malus_domestica	MD13G1068100.v1.1 MD16G1066900.v1.1
prunus_persica	Prupe.1G280000_v2.0.a1
pyrus_communis	pycom13g05990 pycom16g05830
rosa_chinensis	RchiOBHm_Chr4g0439101
rosa_laevigata	RLG00000006299
rosa_multiflora	Rmu_sc0012017.1_g000005 Rmu_sc0015139.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380090
rosa_rugosa	Rorug04G0315700 Rorug04G0315800 Rorug04G0315800 Rorug04G0315800
rosa_samantha	Rh4AG366400 Rh4BG377900 Rh4CG392000 Rh4DG372500
rosa_wichuraiana	Rw0G007470 Rw0G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	580
AccII	CGCG	1 cut(s)	213
AciI	CCGC	2 cut(s)	148, 268
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	3 cut(s)	159, 167, 283
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	1 cut(s)	484
AfiI	CCNNNNNNNGG	2 cut(s)	312, 556
AgsI	TTSAA	2 cut(s)	433, 476
AjnI	CCWGG	4 cut(s)	26, 127, 416, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	144, 176
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	353, 428, 509, 520, 553
AluI	AGCT	5 cut(s)	353, 428, 509, 520, 553
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	76
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	119
AoxI	GGCC	2 cut(s)	24, 462
ApaLI	GTGCAC	1 cut(s)	4
ApoI	RAATTY	3 cut(s)	159, 167, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	534
AspLEI	GCGC	2 cut(s)	215, 585
AspS9I	GGNCC	4 cut(s)	24, 30, 184, 315
AsuHPI	GGTGA	1 cut(s)	406
AvaII	GGWCC	3 cut(s)	30, 184, 315
BaeGI	GKGCMC	1 cut(s)	8
BalI	TGGCCA	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	51
BciT130I	CCWGG	4 cut(s)	28, 129, 418, 466
BcoDI	GTCTC	1 cut(s)	76
BfaI	CTAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	580
Bme1390I	CCNGG	4 cut(s)	28, 129, 418, 466
Bme18I	GGWCC	3 cut(s)	30, 184, 315
BmgT120I	GGNCC	4 cut(s)	24, 30, 184, 315
BmiI	GGNNCC	2 cut(s)	32, 334
BmrFI	CCNGG	4 cut(s)	28, 129, 418, 466
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	531, 563
BpmI	CTGGAG	2 cut(s)	56, 533
BsaI	GGTCTC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	128, 318
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 556
Bse1I	ACTGG	2 cut(s)	118, 306
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	4 cut(s)	28, 129, 418, 466
BseDI	CCNNGG	2 cut(s)	128, 318
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	312, 556
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	524, 591
BseNI	ACTGG	2 cut(s)	118, 306
BseSI	GKGCMC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	2 cut(s)	26, 464
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	312, 556
BsmAI	GTCTC	1 cut(s)	76
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	2 cut(s)	26, 464
Bso31I	GGTCTC	1 cut(s)	76
Bsp1286I	GDGCHC	2 cut(s)	8, 135
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	148, 268
BspANI	GGCC	2 cut(s)	26, 464
BspCNI	CTCAG	2 cut(s)	523, 590
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	32, 334
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	76
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	118, 306
BssECI	CCNNGG	2 cut(s)	128, 318
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	1 cut(s)	318
Bst2UI	CCWGG	4 cut(s)	28, 129, 418, 466
Bst6I	CTCTTC	1 cut(s)	471
BstC8I	GCNNGC	2 cut(s)	98, 351
BstDEI	CTNAG	3 cut(s)	311, 510, 577
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	215, 585
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	124
BstNI	CCWGG	4 cut(s)	28, 129, 418, 466
BstSCI	CCNGG	4 cut(s)	26, 127, 416, 464
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	26, 464
BtsCI	GGATG	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	580
Cac8I	GCNNGC	2 cut(s)	98, 351
CfoI	GCGC	2 cut(s)	215, 585
Cfr13I	GGNCC	4 cut(s)	24, 30, 184, 315
CseI	GACGC	2 cut(s)	381, 486
CsiI	ACCWGGT	1 cut(s)	416
Csp6I	GTAC	1 cut(s)	483
CviAII	CATG	2 cut(s)	136, 404
CviQI	GTAC	1 cut(s)	483
DdeI	CTNAG	3 cut(s)	311, 510, 577
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	76
Eco47I	GGWCC	3 cut(s)	30, 184, 315
Eco57I	CTGAAG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	315
EcoRII	CCWGG	4 cut(s)	26, 127, 416, 464
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	2 cut(s)	139, 407
FaiI	YATR	9 cut(s)	10, 137, 278, 345, 347, 377, 405, 440, 526
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	135, 403
FauI	CCCGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	2 cut(s)	214, 584
GsuI	CTGGAG	2 cut(s)	56, 533
HaeIII	GGCC	2 cut(s)	26, 464
HapII	CCGG	1 cut(s)	557
HgaI	GACGC	2 cut(s)	381, 486
HhaI	GCGC	2 cut(s)	215, 585
Hin1II	CATG	2 cut(s)	139, 407
Hin6I	GCGC	2 cut(s)	213, 583
HinP1I	GCGC	2 cut(s)	213, 583
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	3 cut(s)	76, 399, 535
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	5 cut(s)	6, 67, 184, 414, 483
Hpy188I	TCNGA	8 cut(s)	81, 124, 165, 262, 337, 424, 513, 580
Hpy188III	TCNNGA	2 cut(s)	73, 539
Hpy8I	GTNNAC	5 cut(s)	6, 67, 184, 414, 483
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	2 cut(s)	61, 524
HpyCH4V	TGCA	4 cut(s)	6, 57, 100, 349
HpyF3I	CTNAG	3 cut(s)	311, 510, 577
Hsp92II	CATG	2 cut(s)	139, 407
HspAI	GCGC	2 cut(s)	213, 583
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	338
LweI	GCATC	1 cut(s)	66
MabI	ACCWGGT	1 cut(s)	416
MaeI	CTAG	1 cut(s)	395
MaeIII	GTNAC	1 cut(s)	543
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	4 cut(s)	283, 464, 488, 577
MhlI	GDGCHC	2 cut(s)	8, 135
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	5 cut(s)	159, 167, 283, 433, 501
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	6 cut(s)	58, 80, 166, 203, 215, 586
Mox20I	TGGCCA	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	2 cut(s)	324, 504
MslI	CAYNNNNRTG	1 cut(s)	380
Msp20I	TGGCCA	1 cut(s)	464
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	4 cut(s)	28, 129, 418, 466
MvaI	CCWGG	4 cut(s)	28, 129, 418, 466
MvnI	CGCG	1 cut(s)	213
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	139, 407
NlaIV	GGNNCC	2 cut(s)	32, 334
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	2 cut(s)	399, 535
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PpuMI	RGGWCCY	1 cut(s)	315
Psp5II	RGGWCCY	1 cut(s)	315
Psp6I	CCWGG	4 cut(s)	26, 127, 416, 464
PspGI	CCWGG	4 cut(s)	26, 127, 416, 464
PspN4I	GGNNCC	2 cut(s)	32, 334
PspPI	GGNCC	4 cut(s)	24, 30, 184, 315
PspPPI	RGGWCCY	1 cut(s)	315
RsaI	GTAC	1 cut(s)	484
RsaNI	GTAC	1 cut(s)	483
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	324, 504
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	4 cut(s)	24, 30, 184, 315
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	4 cut(s)	28, 129, 418, 466
SduI	GDGCHC	2 cut(s)	8, 135
SexAI	ACCWGGT	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	3 cut(s)	30, 184, 315
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	5 cut(s)	159, 167, 283, 433, 501
SsiI	CCGC	2 cut(s)	148, 268
SspMI	CTAG	1 cut(s)	395
StyD4I	CCNGG	4 cut(s)	26, 127, 416, 464
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	2 cut(s)	240, 538
TaqII	GACCGA	1 cut(s)	100
TasI	AATT	5 cut(s)	159, 167, 283, 433, 501
TatI	WGTACW	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	399, 535
Tru1I	TTAA	2 cut(s)	324, 504
Tru9I	TTAA	2 cut(s)	324, 504
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	3 cut(s)	30, 184, 315
XapI	RAATTY	3 cut(s)	159, 167, 283
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.