Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008665

Physical Location & Seq

Genomic Coordinates Reverse (-)

28365560 .. 28368148

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G280000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAGAGTCACCTCCAACACAAAATACAGAAATACGAGGAATTCGTGGATGGACGCCTCAAACCAGACCTTGTTCGCGCCATTGCTCAACGGGACAAGGTGTTTGAGCAACAAAAAGTTTTCTCGGATTTGCGGAACAACATTGAGAATTTGGAGAAAAACAGTGTAACCAGTCTTAGGACTTTGGTTAACCTTGGCTCTGAAGTCTATATGCAAGCTGATGTCCCGGATACACGACGCATATTTGTAGACATTGGACTAGGATTTCATGTGGAGTTCACCTGGTCTGAAGCTTTAAATTACATATCTCAAAGAGAAGAAAAGATAGCCAGGCAAATTGAAGAGTATACTAACCTTATTGCATCAATCAAAGCCCAGATAAAGCTGGTATGCGAAGGGATCCGAGAATTACTCCAGCTTCCAGCAGAGAAACGTGCCCCAGAGAGAATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Prefoldin

Protein Analysis

152

Amino Acids

17.68

Weight (kDa)

5.97

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008665)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26660 AT1G26660
fragaria_vesca	FvH4_4g30700
malus_domestica	MD13G1068100.v1.1 MD16G1066900.v1.1
prunus_persica	Prupe.1G280000_v2.0.a1
pyrus_communis	pycom13g05990 pycom16g05830
rosa_chinensis	RchiOBHm_Chr4g0439101
rosa_laevigata	RLG00000006299
rosa_multiflora	Rmu_sc0012017.1_g000005 Rmu_sc0015139.1_g000002
rosa_roxburghii	Rroxscaffold_5G00380090
rosa_rugosa	Rorug04G0315700 Rorug04G0315800 Rorug04G0315800 Rorug04G0315800
rosa_samantha	Rh4AG366400 Rh4BG377900 Rh4CG392000 Rh4DG372500
rosa_wichuraiana	Rw0G007470 Rw0G017020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	249, 347
AccII	CGCG	1 cut(s)	78
AciI	CCGC	1 cut(s)	133
AclWI	GGATC	2 cut(s)	394, 407
AcsI	RAATTY	3 cut(s)	41, 148, 447
AcuI	CTGAAG	2 cut(s)	222, 309
AcyI	GRCGYC	1 cut(s)	55
AfiI	CCNNNNNNNGG	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	341
AjnI	CCWGG	2 cut(s)	281, 329
AluBI	AGCT	4 cut(s)	218, 293, 385, 418
AluI	AGCT	4 cut(s)	218, 293, 385, 418
AlwI	GGATC	2 cut(s)	394, 407
ApoI	RAATTY	3 cut(s)	41, 148, 447
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	399
BccI	CCATC	1 cut(s)	44
BciT130I	CCWGG	2 cut(s)	283, 331
BciVI	GTATCC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	227
BfaI	CTAG	1 cut(s)	260
BfuI	GTATCC	1 cut(s)	223
Bme1390I	CCNGG	3 cut(s)	227, 283, 331
BmiI	GGNNCC	1 cut(s)	401
BmrFI	CCNGG	3 cut(s)	227, 283, 331
BmsI	GCATC	1 cut(s)	371
BplI	GAGNNNNNCTC	2 cut(s)	396, 428
BpmI	CTGGAG	1 cut(s)	398
BpuMI	CCSGG	1 cut(s)	227
BsaHI	GRCGYC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	283, 331
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	171
BseSI	GKGCMC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	227
BslFI	GGGAC	2 cut(s)	107, 209
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmFI	GGGAC	2 cut(s)	107, 209
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	133
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	401
BspPI	GGATC	2 cut(s)	394, 407
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	399
BssNAI	GTATAC	1 cut(s)	348
BssNI	GRCGYC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	193
Bst1107I	GTATAC	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	283, 331
Bst4CI	ACNGT	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	176
BstF5I	GGATG	1 cut(s)	55
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	80
BstKTI	GATC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	399
BstNI	CCWGG	2 cut(s)	283, 331
BstSCI	CCNGG	3 cut(s)	225, 281, 329
BstSLI	GKGCMC	1 cut(s)	439
BstUI	CGCG	1 cut(s)	78
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BstZ17I	GTATAC	1 cut(s)	348
BsuI	GTATCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	80
CseI	GACGC	2 cut(s)	63, 246
CsiI	ACCWGGT	1 cut(s)	281
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	7 cut(s)	198, 218, 293, 329, 374, 385, 418
CviKI_1	RGCY	7 cut(s)	198, 218, 293, 329, 374, 385, 418
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
DraI	TTTAAA	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco130I	CCWWGG	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	222, 309
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	281, 329
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	272
FaiI	YATR	7 cut(s)	210, 212, 242, 270, 305, 348, 391
FaqI	GGGAC	2 cut(s)	107, 209
FatI	CATG	1 cut(s)	268
FblI	GTMKAC	2 cut(s)	249, 347
FokI	GGATG	1 cut(s)	62
FspBI	CTAG	1 cut(s)	260
GlaI	GCGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	398
HapII	CCGG	1 cut(s)	227
HgaI	GACGC	2 cut(s)	63, 246
HhaI	GCGC	1 cut(s)	80
Hin1I	GRCGYC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	1 cut(s)	7
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	227
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	4 cut(s)	190, 250, 279, 348
Hpy188I	TCNGA	4 cut(s)	127, 202, 289, 404
Hpy8I	GTNNAC	4 cut(s)	190, 250, 279, 348
Hpy99I	CGWCG	1 cut(s)	240
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	2 cut(s)	214, 362
HpyF3I	CTNAG	1 cut(s)	176
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	78
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	399
LweI	GCATC	1 cut(s)	371
MabI	ACCWGGT	1 cut(s)	281
MaeI	CTAG	1 cut(s)	260
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	2 cut(s)	8, 166
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	2 cut(s)	329, 353
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	6 cut(s)	41, 148, 298, 336, 407, 447
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	3 cut(s)	23, 31, 68
MseI	TTAA	2 cut(s)	189, 296
MspI	CCGG	1 cut(s)	227
MspR9I	CCNGG	3 cut(s)	227, 283, 331
MvaI	CCWGG	2 cut(s)	283, 331
MvnI	CGCG	1 cut(s)	78
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfoI	TCCNGGA	1 cut(s)	225
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	281, 329
PspGI	CCWGG	2 cut(s)	281, 329
PspN4I	GGNNCC	1 cut(s)	401
PsuI	RGATCY	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	189, 296
Sau3AI	GATC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	227, 283, 331
SduI	GDGCHC	1 cut(s)	439
SexAI	ACCWGGT	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	371
Sse9I	AATT	6 cut(s)	41, 148, 298, 336, 407, 447
SsiI	CCGC	1 cut(s)	133
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	3 cut(s)	225, 281, 329
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	164
TaiI	ACGT	1 cut(s)	436
TasI	AATT	6 cut(s)	41, 148, 298, 336, 407, 447
Tru1I	TTAA	2 cut(s)	189, 296
Tru9I	TTAA	2 cut(s)	189, 296
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	8
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	3 cut(s)	41, 148, 447
XmiI	GTMKAC	2 cut(s)	249, 347
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.