FvH4_4g30700

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008665
Physical Location & Seq
Forward (+)
30204115 .. 30206314
2200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30700.t1

Sequence Viewer

Length: 456 bp
ATGGAGAGCTACAGACAGCAAAAGATACAGAAATTGGAGGAATTCGTCGATGGCCGCCTCAAACCTGACCTCGTTCAAACCATCGCTCAACGGGACAAGGTGTTTGAGAAGCAAAAAGTTTTCTCGGATCTACGGAAGAACATTGAGAATTTGGAGAAGAATAGTGTGACTAGTCTTAGGACGATGGTTAATCTTGGCTCTGAAGTGTATATGCAAGCTGAAGTTCCAGATACACGCCGCATATTTGTAGATGTTGGACTTGGATTCCATGTGGAATTTACCTGGTCCGAAGCTTTGAGCTACATATCTCAAAGAGAAGAGAAGTTAGAGAGGGAGATTGAAGATTATACCAACCGCATAGCCTCAATTAAATCCCACATAAAGATGGTATGCGAAGGGATTCGGGAATTACTCCAGCTTCCTGCAGAGAAACCTGTGCCAGAGCTCAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

152

Amino Acids

17.75

Weight (kDa)

5.56

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 29 - 137 4.2e-21 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 55, 238, 355
AclWI GGATC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 3 cut(s) 41, 148, 275
AcuI CTGAAG 2 cut(s) 222, 240
AgsI TTSAA 2 cut(s) 77, 341
AhlI ACTAGT 1 cut(s) 170
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 6 cut(s) 9, 218, 293, 300, 418, 445
AluI AGCT 6 cut(s) 9, 218, 293, 300, 418, 445
Alw21I GWGCWC 1 cut(s) 447
AlwI GGATC 1 cut(s) 135
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 3 cut(s) 41, 148, 275
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 399
AspS9I GGNCC 1 cut(s) 285
AvaII GGWCC 1 cut(s) 285
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BccI CCATC 4 cut(s) 44, 89, 178, 379
BciT130I CCWGG 1 cut(s) 283
BcuI ACTAGT 1 cut(s) 170
BfaI CTAG 1 cut(s) 171
BfmI CTRYAG 2 cut(s) 10, 423
BisI GCNGC 2 cut(s) 55, 238
BlsI GCNGC 2 cut(s) 56, 239
Bme1390I CCNGG 1 cut(s) 283
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 398
BseBI CCWGG 1 cut(s) 283
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 447
BslFI GGGAC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 1 cut(s) 127
BspACI CCGC 3 cut(s) 55, 238, 355
BspANI GGCC 1 cut(s) 54
BspMAI CTGCAG 1 cut(s) 427
BspPI GGATC 1 cut(s) 135
BssMI GATC 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 176
BstKTI GATC 1 cut(s) 130
BstMBI GATC 1 cut(s) 127
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 281
BstSFI CTRYAG 2 cut(s) 10, 423
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 281
CviAII CATG 1 cut(s) 269
CviJI RGCY 9 cut(s) 9, 54, 198, 218, 293, 300, 362, 418, 445
CviKI_1 RGCY 9 cut(s) 9, 54, 198, 218, 293, 300, 362, 418, 445
DdeI CTNAG 1 cut(s) 176
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Ecl136II GAGCTC 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 285
Eco53kI GAGCTC 1 cut(s) 445
Eco57I CTGAAG 2 cut(s) 222, 240
EcoICRI GAGCTC 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 281
EcoT38I GRGCYC 1 cut(s) 447
FaeI CATG 1 cut(s) 272
FaiI YATR 9 cut(s) 210, 212, 242, 270, 305, 348, 359, 380, 391
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 55, 238
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 2 cut(s) 55, 238
FspBI CTAG 1 cut(s) 171
GluI GCNGC 2 cut(s) 55, 238
GsuI CTGGAG 1 cut(s) 398
HaeIII GGCC 1 cut(s) 54
Hin1II CATG 1 cut(s) 272
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 2 cut(s) 264, 400
Hpy188I TCNGA 3 cut(s) 127, 202, 289
Hpy188III TCNNGA 2 cut(s) 227, 404
Hpy99I CGWCG 1 cut(s) 50
HpyAV CCTTC 1 cut(s) 389
HpyCH4V TGCA 2 cut(s) 214, 425
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 1 cut(s) 272
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 7 cut(s) 78, 240, 268, 295, 428, 435, 447
MabI ACCWGGT 1 cut(s) 281
MaeI CTAG 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 4 cut(s) 148, 169, 329, 353
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 6 cut(s) 32, 41, 148, 275, 366, 407
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 5 cut(s) 31, 68, 80, 324, 373
MroXI GAANNNNTTC 1 cut(s) 399
MseI TTAA 2 cut(s) 189, 369
MslI CAYNNNNRTG 1 cut(s) 383
MspR9I CCNGG 1 cut(s) 283
MvaI CCWGG 1 cut(s) 283
NdeII GATC 1 cut(s) 127
NlaIII CATG 1 cut(s) 272
NmuCI GTSAC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 264, 400
PkrI GCNGC 2 cut(s) 56, 239
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspPI GGNCC 1 cut(s) 285
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 127
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 2 cut(s) 189, 369
SatI GCNGC 2 cut(s) 55, 238
Sau3AI GATC 1 cut(s) 127
Sau96I GGNCC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 283
SduI GDGCHC 1 cut(s) 447
SexAI ACCWGGT 1 cut(s) 281
SfcI CTRYAG 2 cut(s) 10, 423
SinI GGWCC 1 cut(s) 285
SmiMI CAYNNNNRTG 1 cut(s) 383
SpeI ACTAGT 1 cut(s) 170
Sse9I AATT 6 cut(s) 32, 41, 148, 275, 366, 407
SsiI CCGC 3 cut(s) 55, 238, 355
SspMI CTAG 1 cut(s) 171
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 281
TaqI TCGA 1 cut(s) 48
TasI AATT 6 cut(s) 32, 41, 148, 275, 366, 407
TauI GCSGC 2 cut(s) 57, 240
TfiI GAWTC 2 cut(s) 264, 400
Tru1I TTAA 2 cut(s) 189, 369
Tru9I TTAA 2 cut(s) 189, 369
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspGWI ACGGA 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 285
XapI RAATTY 3 cut(s) 41, 148, 275
XmnI GAANNNNTTC 1 cut(s) 399
XspI CTAG 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.