Rroxscaffold_5G00380090

Protein UXT homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0008665
Physical Location & Seq
Forward (+)
60262754 .. 60264794
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380090.1

Sequence Viewer

Length: 354 bp
ATGGAGAGCTACCGACAACAAAAGATACAGAAATTGGAGGAGTTCGTCGATGGCCGCCTCAAACCTGACCTTGTTCAAACCATCGCTCAACGGGACAAGGTGTTTGAAAAGCAGAAAGTTTTGCCAGATGCGCGACGCATATTCGTAGATGTTGGACTTGGATTCCATGTGGAATTTACCTGGTCTGAAGCTTTGAATTACATATCTCAAAGAGAAGAAAAGTTAGAGAGTGAAATTGAAGATTATACCAACCGCATTGCCTCGATTAAATCCCACATAAAGATGGTATGTGAAGGGATTCGGGAATTACTCCAGCTTCCAGCAGAGAAACCTGTGCCAGAGCTCAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Prefoldin

Protein Analysis

117

Amino Acids

13.79

Weight (kDa)

5.48

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prefoldin PF02996 31 - 103 2.3e-10 Prefoldin subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 133
AciI CCGC 2 cut(s) 55, 253
AcoI YGGCCR 1 cut(s) 52
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 207
AgsI TTSAA 4 cut(s) 77, 107, 196, 239
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 4 cut(s) 9, 191, 316, 343
AluI AGCT 4 cut(s) 9, 191, 316, 343
Alw21I GWGCWC 1 cut(s) 345
AoxI GGCC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 173
ArsI GACNNNNNNTTYG 2 cut(s) 86, 118
Asp700I GAANNNNTTC 1 cut(s) 297
AspLEI GCGC 1 cut(s) 133
BanII GRGCYC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 3 cut(s) 44, 89, 277
BciT130I CCWGG 1 cut(s) 181
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme1390I CCNGG 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 255
BseBI CCWGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 255
BseRI GAGGAG 1 cut(s) 53
Bsh1236I CGCG 1 cut(s) 133
BshFI GGCC 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 345
BslFI GGGAC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 345
BspACI CCGC 2 cut(s) 55, 253
BspANI GGCC 1 cut(s) 54
BspFNI CGCG 1 cut(s) 133
BsrDI GCAATG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 181
BstFNI CGCG 1 cut(s) 133
BstHHI GCGC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 1 cut(s) 179
BstUI CGCG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 67
CfoI GCGC 1 cut(s) 133
CseI GACGC 1 cut(s) 144
CsiI ACCWGGT 1 cut(s) 179
CviAII CATG 1 cut(s) 167
CviJI RGCY 5 cut(s) 9, 54, 191, 316, 343
CviKI_1 RGCY 5 cut(s) 9, 54, 191, 316, 343
EaeI YGGCCR 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 345
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 1 cut(s) 207
EcoICRI GAGCTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 345
FaeI CATG 1 cut(s) 170
FaiI YATR 6 cut(s) 140, 168, 203, 246, 278, 289
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 166
Fnu4HI GCNGC 1 cut(s) 55
FriOI GRGCYC 1 cut(s) 345
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 55
GsuI CTGGAG 1 cut(s) 296
HaeIII GGCC 1 cut(s) 54
HgaI GACGC 1 cut(s) 144
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 170
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HindIII AAGCTT 1 cut(s) 189
HinfI GANTC 2 cut(s) 162, 298
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 302
Hpy99I CGWCG 2 cut(s) 50, 138
HpyAV CCTTC 1 cut(s) 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
Hsp92II CATG 1 cut(s) 170
HspAI GCGC 1 cut(s) 131
LpnPI CCDG 7 cut(s) 78, 138, 166, 193, 326, 333, 345
LweI GCATC 1 cut(s) 118
MabI ACCWGGT 1 cut(s) 179
MboII GAAGA 2 cut(s) 227, 251
MhlI GDGCHC 1 cut(s) 345
MluCI AATT 5 cut(s) 32, 173, 196, 234, 305
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 31, 68, 271
MroXI GAANNNNTTC 1 cut(s) 297
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 181
MvaI CCWGG 1 cut(s) 181
MvnI CGCG 1 cut(s) 133
MwoI GCNNNNNNNGC 1 cut(s) 130
NlaIII CATG 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 297
PfeI GAWTC 2 cut(s) 162, 298
PkrI GCNGC 1 cut(s) 56
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 345
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 345
SetI ASST 9 cut(s) 11, 67, 72, 102, 182, 193, 318, 334, 345
SexAI ACCWGGT 1 cut(s) 179
SfaNI GCATC 1 cut(s) 118
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 5 cut(s) 32, 173, 196, 234, 305
SsiI CCGC 2 cut(s) 55, 253
SstI GAGCTC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 179
TaqI TCGA 2 cut(s) 48, 263
TasI AATT 5 cut(s) 32, 173, 196, 234, 305
TauI GCSGC 1 cut(s) 57
TfiI GAWTC 2 cut(s) 162, 298
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
XapI RAATTY 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.