Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Reverse (-)

9862041 .. 9864779

Gene Structure 2739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAAGAATGGTTTGATAATCATAAACTGTATTATCCTCACTATAGGAACATGTGGAGGTCCTTTGTTAACTCGTCTCTACTTCACCAATGGCGGAAAACGAATCTGGTTCATGAGCTTCCTATCAACCGCTGGTTTTCCAATCATCCTCATCCCTCTCTTGGTCTCCTTCCTCAGCCGTCGCCGCAGCAACCGCAACCCTAACAACGCGGAAAACAAGCGGAAAACAAAGCTCTTCCTCATGGAAACTCCTCTGTTTATCGCCTCCATTGTCATAGGGTTGCTCACAGGACTTGACAACTACTTATATTCTTACGGATTAGCATATCTGCCAGTTTCAACTTCATCGCTCATAATCGGAACTCAACTAGCTTTCAACGCTCTCTTCGCTTTCTTGTTAGTCAAGCAAAAGTTCACTCCGTTCTCCATAAACGCCGTCGTTTTGTTGACGGTTGGTATCGGGATCCTTGCGTTACACAGTGATGGAGACAAACCGGCTAAGGAGAGCAAGAAAGAGTATGTGGTTGGGTTCTTGATGACTGTGGTTGCAGCTCTTCTCTATGCTTTTATATTACCGCTCGTTGAGCTAACTTACAAGAAAGCTCGTCAAGAAATCACTTTCCCACTTGTGCTTGAGATTCAGATGGTCATGTGCCTTGCTGCTACTTTTTTCTGTGTCATTGGCATGTTCATCGTTGGAGATTTTAAGGTGATAGCAAGAGAAGCAAGAGAGTTCAAGATTGGAGGATCAGTGTTTTACTATGCATTGATAGTGATCACAGGAATAATATGGCAAGGTTTCTTCTTAGGAGCCATAGGGATTGTGTTTTGTGCATCATCACTAGCTTCTGGTGTTCTGATAAGTGTTCTGCTTCCGGTGACTGAAGTTTTCGCCGTCGTTTGTTTCCGGGAGAAGTTTCAGGCAGAGAAAGGTGTCTCTCTACTTCTTTCTCTTTGGGGATTTGTCTCTTACTTCTACGGCGAGTTTAAATCCGGCAAGAAAGTTGTTGATAAACCTCAACCGCCGGAGACAGAACTGCCTATTCTTCCTGTTAGTGATTATGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

356

Amino Acids

39.28

Weight (kDa)

9.32

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	5 - 334	5e-129	Purine nucleobase transmembrane transport
EamA	PF00892	48 - 156	7.6e-08	EamA-like transporter family
UAA	PF08449	89 - 326	1.3e-07	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	577
AccII	CGCG	1 cut(s)	209
AciI	CCGC	8 cut(s)	93, 129, 184, 193, 209, 220, 575, 1022
AclWI	GGATC	3 cut(s)	457, 470, 754
AcuI	CTGAAG	1 cut(s)	903
AfiI	CCNNNNNNNGG	1 cut(s)	160
AflIII	ACRYGT	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	339, 376, 736
AluBI	AGCT	7 cut(s)	117, 232, 371, 551, 586, 602, 845
AluI	AGCT	7 cut(s)	117, 232, 371, 551, 586, 602, 845
Alw26I	GTCTC	6 cut(s)	80, 169, 480, 940, 970, 1022
AlwI	GGATC	3 cut(s)	457, 470, 754
ApeKI	GCWGC	3 cut(s)	186, 548, 659
AspS9I	GGNCC	1 cut(s)	59
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	3 cut(s)	76, 721, 889
AvaII	GGWCC	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	462
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	3 cut(s)	198, 560, 646
BccI	CCATC	2 cut(s)	476, 637
BceAI	ACGGC	4 cut(s)	162, 419, 878, 994
BcgI	CGANNNNNNTGC	2 cut(s)	673, 707
BclI	TGATCA	1 cut(s)	774
BcnI	CCSGG	1 cut(s)	908
BcoDI	GTCTC	6 cut(s)	80, 169, 480, 940, 970, 1022
BfaI	CTAG	2 cut(s)	368, 842
BfmI	CTRYAG	1 cut(s)	42
BisI	GCNGC	4 cut(s)	184, 187, 549, 660
BlsI	GCNGC	4 cut(s)	185, 188, 550, 661
Bme1390I	CCNGG	1 cut(s)	908
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	464, 811
BmrFI	CCNGG	1 cut(s)	908
BmsI	GCATC	1 cut(s)	842
Bpu10I	CCTNAGC	2 cut(s)	173, 498
BpuEI	CTTGAG	1 cut(s)	653
BpuMI	CCSGG	1 cut(s)	908
BsaBI	GATNNNNATC	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	874
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse118I	RCCGGY	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	773
BseGI	GGATG	2 cut(s)	144, 150
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	3 cut(s)	198, 560, 646
Bsh1236I	CGCG	1 cut(s)	209
BsiSI	CCGG	5 cut(s)	494, 875, 907, 993, 1025
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	6 cut(s)	80, 169, 480, 940, 970, 1022
BsmBI	CGTCTC	1 cut(s)	80
Bso31I	GGTCTC	1 cut(s)	169
Bsp143I	GATC	3 cut(s)	462, 746, 774
BspACI	CCGC	8 cut(s)	93, 129, 184, 193, 209, 220, 575, 1022
BspCNI	CTCAG	1 cut(s)	186
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	464, 811
BspPI	GGATC	3 cut(s)	457, 470, 754
BspQI	GCTCTTC	2 cut(s)	239, 558
BspTNI	GGTCTC	1 cut(s)	169
BsrBI	CCGCTC	1 cut(s)	577
BsrFI	RCCGGY	1 cut(s)	493
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	493
BssMI	GATC	3 cut(s)	462, 746, 774
Bst4CI	ACNGT	4 cut(s)	29, 451, 479, 541
Bst6I	CTCTTC	3 cut(s)	239, 389, 558
BstDEI	CTNAG	3 cut(s)	173, 498, 805
BstF5I	GGATG	2 cut(s)	144, 150
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	3 cut(s)	465, 749, 777
BstMAI	GTCTC	6 cut(s)	80, 169, 480, 940, 970, 1022
BstMBI	GATC	3 cut(s)	462, 746, 774
BstMWI	GCNNNNNNNGC	6 cut(s)	183, 192, 377, 386, 583, 722
BstNSI	RCATGY	2 cut(s)	54, 688
BstSCI	CCNGG	1 cut(s)	906
BstSFI	CTRYAG	1 cut(s)	42
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	3 cut(s)	198, 560, 646
BstX2I	RGATCY	1 cut(s)	462
BstYI	RGATCY	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	2 cut(s)	144, 150
BtsIMutI	CAGTG	2 cut(s)	484, 756
CciI	TCATGA	1 cut(s)	111
Cfr10I	RCCGGY	1 cut(s)	493
Cfr13I	GGNCC	1 cut(s)	59
CviAII	CATG	5 cut(s)	51, 112, 241, 649, 685
DdeI	CTNAG	3 cut(s)	173, 498, 805
DpnI	GATC	3 cut(s)	464, 748, 776
DpnII	GATC	3 cut(s)	462, 746, 774
DraI	TTTAAA	1 cut(s)	988
Eam1104I	CTCTTC	3 cut(s)	239, 389, 558
EarI	CTCTTC	3 cut(s)	239, 389, 558
EciI	GGCGGA	1 cut(s)	108
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	903
EcoO109I	RGGNCCY	1 cut(s)	59
EcoT22I	ATGCAT	1 cut(s)	766
Esp3I	CGTCTC	1 cut(s)	80
FaeI	CATG	5 cut(s)	54, 115, 244, 652, 688
FatI	CATG	5 cut(s)	50, 111, 240, 648, 684
FbaI	TGATCA	1 cut(s)	774
Fnu4HI	GCNGC	4 cut(s)	184, 187, 549, 660
FokI	GGATG	2 cut(s)	131, 137
Fsp4HI	GCNGC	4 cut(s)	184, 187, 549, 660
FspBI	CTAG	2 cut(s)	368, 842
GluI	GCNGC	4 cut(s)	184, 187, 549, 660
HapII	CCGG	5 cut(s)	494, 875, 907, 993, 1025
Hin1II	CATG	5 cut(s)	54, 115, 244, 652, 688
HincII	GTYRAC	2 cut(s)	69, 447
HindII	GTYRAC	2 cut(s)	69, 447
HinfI	GANTC	2 cut(s)	102, 637
HpaI	GTTAAC	1 cut(s)	69
HpaII	CCGG	5 cut(s)	494, 875, 907, 993, 1025
HphI	GGTGA	3 cut(s)	76, 721, 889
Hpy166II	GTNNAC	3 cut(s)	69, 414, 447
Hpy188I	TCNGA	3 cut(s)	359, 642, 858
Hpy188III	TCNNGA	5 cut(s)	112, 460, 532, 608, 736
Hpy8I	GTNNAC	3 cut(s)	69, 414, 447
Hpy99I	CGWCG	3 cut(s)	183, 440, 899
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	4 cut(s)	29, 451, 479, 541
HpyCH4V	TGCA	3 cut(s)	548, 764, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	183, 192, 377, 386, 583, 722
HpyF3I	CTNAG	3 cut(s)	173, 498, 805
Hsp92II	CATG	5 cut(s)	54, 115, 244, 652, 688
Ksp22I	TGATCA	1 cut(s)	774
KspAI	GTTAAC	1 cut(s)	69
Kzo9I	GATC	3 cut(s)	462, 746, 774
LguI	GCTCTTC	2 cut(s)	239, 558
LmnI	GCTCC	1 cut(s)	809
Lsp1109I	GCAGC	3 cut(s)	198, 560, 646
LweI	GCATC	1 cut(s)	842
MaeI	CTAG	2 cut(s)	368, 842
MaeIII	GTNAC	2 cut(s)	471, 877
MalI	GATC	3 cut(s)	464, 748, 776
MbiI	CCGCTC	1 cut(s)	577
MboI	GATC	3 cut(s)	462, 746, 774
MboII	GAAGA	6 cut(s)	16, 226, 376, 545, 793, 1037
MflI	RGATCY	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	676
Mph1103I	ATGCAT	1 cut(s)	766
MseI	TTAA	4 cut(s)	68, 705, 987, 1069
MslI	CAYNNNNRTG	2 cut(s)	480, 683
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	5 cut(s)	494, 875, 907, 993, 1025
MspR9I	CCNGG	1 cut(s)	908
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	6 cut(s)	183, 192, 377, 386, 583, 722
NciI	CCSGG	1 cut(s)	908
NdeII	GATC	3 cut(s)	462, 746, 774
NlaIII	CATG	5 cut(s)	54, 115, 244, 652, 688
NlaIV	GGNNCC	2 cut(s)	464, 811
NmuCI	GTSAC	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	54, 688
PagI	TCATGA	1 cut(s)	111
PciI	ACATGT	1 cut(s)	50
PciSI	GCTCTTC	2 cut(s)	239, 558
PfeI	GAWTC	2 cut(s)	102, 637
PfoI	TCCNGGA	1 cut(s)	906
PkrI	GCNGC	4 cut(s)	185, 188, 550, 661
PpuMI	RGGWCCY	1 cut(s)	59
PscI	ACATGT	1 cut(s)	50
Psp5II	RGGWCCY	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	464, 811
PspPI	GGNCC	1 cut(s)	59
PspPPI	RGGWCCY	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	462
RseI	CAYNNNNRTG	2 cut(s)	480, 683
SapI	GCTCTTC	2 cut(s)	239, 558
SaqAI	TTAA	4 cut(s)	68, 705, 987, 1069
SatI	GCNGC	4 cut(s)	184, 187, 549, 660
Sau3AI	GATC	3 cut(s)	462, 746, 774
Sau96I	GGNCC	1 cut(s)	59
ScrFI	CCNGG	1 cut(s)	908
SfaNI	GCATC	1 cut(s)	842
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	1 cut(s)	59
SmiMI	CAYNNNNRTG	2 cut(s)	480, 683
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
SsiI	CCGC	8 cut(s)	93, 129, 184, 193, 209, 220, 575, 1022
SspMI	CTAG	2 cut(s)	368, 842
StyD4I	CCNGG	1 cut(s)	906
TaaI	ACNGT	4 cut(s)	29, 451, 479, 541
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	102, 637
Tru1I	TTAA	4 cut(s)	68, 705, 987, 1069
Tru9I	TTAA	4 cut(s)	68, 705, 987, 1069
TscAI	CASTG	2 cut(s)	484, 756
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	3 cut(s)	186, 548, 659
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	4 cut(s)	17, 100, 333, 679
TspGWI	ACGGA	2 cut(s)	330, 408
TspRI	CASTG	2 cut(s)	484, 756
VpaK11BI	GGWCC	1 cut(s)	59
XceI	RCATGY	2 cut(s)	54, 688
XspI	CTAG	2 cut(s)	368, 842
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.