Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Forward (+)

43056769 .. 43058955

Gene Structure 2187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G525600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAAGCCAGTCATGAAGAAAAACGCAACGCCTCCTTGAAGAGAGCCCTTCTCATACTAAGCTGCGTACTCTTATCAATAGGCACATGCGGAGGCCCTTTGATAATGCGCCTCTACTTTATCCATGGAGGTAAACGTGTCTGGCTTTCCAGCTGGCTGGAAACCGGCGGCTGGCCAATCATCTTCATCCCCATAGCCCTAGCTTATTACCACCGCCGCACCACTGAAGGCCCTTCGACAAAACTCTTCTTCATCAAGCTCCCACTCTTCATAGCTTCCGCCGTCATCGGCCTAATTACTGGCCTTGACGACTACCTCTATGCCTACGGAGTGGCTCGCCTTCCGGTCTCCACGTCATCCCTAATCATCGCTGCCCAGCTGGCTTTCACTGCCCTTTTTGCATTTCTTCTTGTGAAGCAGAAGTTCACTTCTTACTCCACAAACGCCGTGGTCTTATTGACTATTGGCGCGGCCGTTTTGGGGTTGAACACCAACGCCGATCGGCCAAAGGGTGAGTCGGATAAGGAGTATATTGCCGGGTTTTTGATGACAGTGGCGGCGGCGGCTTTGTATGGGTTTGTGTTGCCGTTGGTGGAGTTGACATACAAGAAGGCCAAGCAGACCATTACTTATGCTTTGGTTCTTGAGATTCAAATGGTTATGTGTTTGTTTGCTACTATTTTCTGCACTGTGGGGATGCTTATCAACAATGACTTCAAGGTTATTCTAAGAGAAGCAAGAAATTTCGGGCTTGGGAAAGGCACCTACTATGTGGTGCTTGTATTGAGTGCAATAGTTTGGCAAACTTTCTTTCTGGGAGCCATTGGAATCATCTTCTGTGCCTCATCCTTACTCTCTGGTATTGTAATTGCGGTTCTGCTCCCAATTACAGAGATTCTAGCTGTCATTTTTTACCACGAAAAATTTCAAGCAGAAAAAGGGGTTGCTCTCGCACTTTCTCTGTGGGGTTTTGTCTCATATTTCTATGGTGAGATAAAATACAGCAAGCAAAGAGAAAATGAAAAGAAAAATGAAAAAGAAAAAGAAAAAGAAAAAGAAATAGAAATAGAAACGAAAGACACCCCAGAAACAGCAGACGTTTCTCAACTCGATCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

373

Amino Acids

41.23

Weight (kDa)

8.6

Isoelectric Point (pI)

31.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	761
AccII	CGCG	1 cut(s)	470
AclWI	GGATC	1 cut(s)	1106
AcoI	YGGCCR	3 cut(s)	173, 471, 503
AcsI	RAATTY	2 cut(s)	742, 923
AcuI	CTGAAG	1 cut(s)	246
AfaI	GTAC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	171, 480
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	5 cut(s)	40, 487, 653, 718, 929
AjiI	CACGTC	1 cut(s)	354
AluBI	AGCT	7 cut(s)	63, 153, 203, 259, 275, 379, 902
AluI	AGCT	7 cut(s)	63, 153, 203, 259, 275, 379, 902
Alw26I	GTCTC	2 cut(s)	352, 979
AlwI	GGATC	1 cut(s)	1106
AoxI	GGCC	8 cut(s)	94, 173, 229, 289, 301, 471, 503, 612
ApeKI	GCWGC	2 cut(s)	63, 371
ApoI	RAATTY	2 cut(s)	742, 923
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
Asp700I	GAANNNNTTC	1 cut(s)	924
AspLEI	GCGC	2 cut(s)	111, 470
AspS9I	GGNCC	2 cut(s)	95, 230
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	524, 1001
BalI	TGGCCA	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	761
BanII	GRGCYC	1 cut(s)	49
BbvI	GCAGC	2 cut(s)	50, 358
BceAI	ACGGC	4 cut(s)	266, 431, 458, 571
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	352, 979
BfaI	CTAG	3 cut(s)	200, 899, 1117
BglI	GCCNNNNNGGC	1 cut(s)	380
BisI	GCNGC	8 cut(s)	64, 169, 217, 372, 471, 558, 561, 564
BlsI	GCNGC	8 cut(s)	65, 170, 218, 373, 472, 559, 562, 565
Bme1390I	CCNGG	1 cut(s)	538
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	2 cut(s)	95, 230
BmiI	GGNNCC	2 cut(s)	763, 820
BmrFI	CCNGG	1 cut(s)	538
BmsI	GCATC	1 cut(s)	687
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BpuEI	CTTGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	701
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	2 cut(s)	124, 447
BsaWI	WCCGGW	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 480
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	2 cut(s)	9, 304
Bse8I	GATNNNNATC	1 cut(s)	701
BseDI	CCNNGG	2 cut(s)	124, 447
BseGI	GGATG	4 cut(s)	186, 356, 702, 845
BseJI	GATNNNNATC	1 cut(s)	701
BseLI	CCNNNNNNNGG	2 cut(s)	171, 480
BseNI	ACTGG	2 cut(s)	9, 304
BseX3I	CGGCCG	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	50, 358
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	2 cut(s)	474, 502
BshFI	GGCC	8 cut(s)	96, 175, 231, 291, 303, 473, 505, 614
BshNI	GGYRCC	1 cut(s)	761
BsiEI	CGRYCG	2 cut(s)	474, 502
BsiSI	CCGG	3 cut(s)	165, 344, 537
BslI	CCNNNNNNNGG	2 cut(s)	171, 480
BsmAI	GTCTC	2 cut(s)	352, 979
BsnI	GGCC	8 cut(s)	96, 175, 231, 291, 303, 473, 505, 614
Bso31I	GGTCTC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	499, 1111
Bsp19I	CCATGG	1 cut(s)	124
BspANI	GGCC	8 cut(s)	96, 175, 231, 291, 303, 473, 505, 614
BspFNI	CGCG	1 cut(s)	470
BspHI	TCATGA	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	763, 820
BspPI	GGATC	1 cut(s)	1106
BspT107I	GGYRCC	1 cut(s)	761
BspTNI	GGTCTC	1 cut(s)	352
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	9, 304
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	124, 447
BssMI	GATC	2 cut(s)	499, 1111
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	2 cut(s)	553, 691
Bst6I	CTCTTC	3 cut(s)	35, 251, 272
BstC8I	GCNNGC	5 cut(s)	155, 173, 337, 381, 1007
BstDEI	CTNAG	2 cut(s)	59, 728
BstDSI	CCRYGG	2 cut(s)	124, 447
BstF5I	GGATG	4 cut(s)	186, 356, 702, 845
BstFNI	CGCG	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	111, 470
BstKTI	GATC	2 cut(s)	502, 1114
BstMAI	GTCTC	2 cut(s)	352, 979
BstMBI	GATC	2 cut(s)	499, 1111
BstMCI	CGRYCG	2 cut(s)	474, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	380, 389, 398, 563
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	536
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	2 cut(s)	50, 358
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstZI	CGGCCG	1 cut(s)	471
BsuRI	GGCC	8 cut(s)	96, 175, 231, 291, 303, 473, 505, 614
BtgI	CCRYGG	2 cut(s)	124, 447
BtgZI	GCGATG	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	4 cut(s)	186, 356, 702, 845
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	4 cut(s)	222, 387, 558, 687
Cac8I	GCNNGC	5 cut(s)	155, 173, 337, 381, 1007
CciI	TCATGA	1 cut(s)	13
CfoI	GCGC	2 cut(s)	111, 470
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	95, 230
Csp6I	GTAC	1 cut(s)	68
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	3 cut(s)	14, 87, 125
CviQI	GTAC	1 cut(s)	68
DdeI	CTNAG	2 cut(s)	59, 728
DpnI	GATC	2 cut(s)	501, 1113
DpnII	GATC	2 cut(s)	499, 1111
EaeI	YGGCCR	3 cut(s)	173, 471, 503
EagI	CGGCCG	1 cut(s)	471
Eam1104I	CTCTTC	3 cut(s)	35, 251, 272
EarI	CTCTTC	3 cut(s)	35, 251, 272
EciI	GGCGGA	1 cut(s)	268
EclXI	CGGCCG	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	471
Eco57I	CTGAAG	1 cut(s)	246
EcoO109I	RGGNCCY	2 cut(s)	95, 230
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	3 cut(s)	17, 90, 128
FatI	CATG	3 cut(s)	13, 86, 124
Fnu4HI	GCNGC	8 cut(s)	64, 169, 217, 372, 471, 558, 561, 564
FokI	GGATG	4 cut(s)	173, 343, 709, 832
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	8 cut(s)	64, 169, 217, 372, 471, 558, 561, 564
FspBI	CTAG	3 cut(s)	200, 899, 1117
GlaI	GCGC	2 cut(s)	110, 469
GluI	GCNGC	8 cut(s)	64, 169, 217, 372, 471, 558, 561, 564
GsaI	CCCAGC	1 cut(s)	379
HaeIII	GGCC	8 cut(s)	96, 175, 231, 291, 303, 473, 505, 614
HapII	CCGG	3 cut(s)	165, 344, 537
HhaI	GCGC	2 cut(s)	111, 470
Hin1II	CATG	3 cut(s)	17, 90, 128
Hin6I	GCGC	2 cut(s)	109, 468
HinP1I	GCGC	2 cut(s)	109, 468
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HinfI	GANTC	4 cut(s)	515, 649, 828, 895
HpaII	CCGG	3 cut(s)	165, 344, 537
HphI	GGTGA	2 cut(s)	524, 1001
Hpy166II	GTNNAC	3 cut(s)	134, 426, 600
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	2 cut(s)	14, 644
Hpy8I	GTNNAC	3 cut(s)	134, 426, 600
HpyAV	CCTTC	5 cut(s)	59, 221, 243, 350, 604
HpyCH4III	ACNGT	2 cut(s)	553, 691
HpyCH4IV	ACGT	3 cut(s)	136, 353, 1098
HpyCH4V	TGCA	3 cut(s)	401, 687, 791
HpyF10VI	GCNNNNNNNGC	4 cut(s)	380, 389, 398, 563
HpyF3I	CTNAG	2 cut(s)	59, 728
HpySE526I	ACGT	3 cut(s)	136, 353, 1098
Hsp92II	CATG	3 cut(s)	17, 90, 128
HspAI	GCGC	2 cut(s)	109, 468
Kzo9I	GATC	2 cut(s)	499, 1111
LmnI	GCTCC	3 cut(s)	264, 818, 885
Lsp1109I	GCAGC	2 cut(s)	50, 358
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	3 cut(s)	200, 899, 1117
MaeII	ACGT	3 cut(s)	136, 353, 1098
MalI	GATC	2 cut(s)	501, 1113
MboI	GATC	2 cut(s)	499, 1111
MboII	GAAGA	8 cut(s)	29, 52, 175, 238, 241, 259, 398, 826
MhlI	GDGCHC	1 cut(s)	49
MlsI	TGGCCA	1 cut(s)	175
MluCI	AATT	5 cut(s)	294, 742, 867, 885, 923
MluNI	TGGCCA	1 cut(s)	175
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	6 cut(s)	43, 86, 122, 122, 326, 853
Mox20I	TGGCCA	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	175
Msp20I	TGGCCA	1 cut(s)	175
MspA1I	CMGCKG	2 cut(s)	153, 379
MspI	CCGG	3 cut(s)	165, 344, 537
MspR9I	CCNGG	1 cut(s)	538
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	4 cut(s)	380, 389, 398, 563
NciI	CCSGG	1 cut(s)	538
NcoI	CCATGG	1 cut(s)	124
NdeII	GATC	2 cut(s)	499, 1111
NlaIII	CATG	3 cut(s)	17, 90, 128
NlaIV	GGNNCC	2 cut(s)	763, 820
NspI	RCATGY	1 cut(s)	90
PagI	TCATGA	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	924
PfeI	GAWTC	3 cut(s)	649, 828, 895
PkrI	GCNGC	8 cut(s)	65, 170, 218, 373, 472, 559, 562, 565
Ple19I	CGATCG	1 cut(s)	502
PleI	GAGTC	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	375
PspN4I	GGNNCC	2 cut(s)	763, 820
PspPI	GGNCC	2 cut(s)	95, 230
PsrI	GAACNNNNNNTAC	2 cut(s)	858, 890
PvuI	CGATCG	1 cut(s)	502
PvuII	CAGCTG	2 cut(s)	153, 379
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SatI	GCNGC	8 cut(s)	64, 169, 217, 372, 471, 558, 561, 564
Sau3AI	GATC	2 cut(s)	499, 1111
Sau96I	GGNCC	2 cut(s)	95, 230
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	1 cut(s)	49
SfaNI	GCATC	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	644
SmoI	CTYRAG	1 cut(s)	644
Sse9I	AATT	5 cut(s)	294, 742, 867, 885, 923
SspMI	CTAG	3 cut(s)	200, 899, 1117
StyD4I	CCNGG	1 cut(s)	536
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	2 cut(s)	553, 691
TaiI	ACGT	3 cut(s)	139, 356, 1101
TaqI	TCGA	2 cut(s)	236, 1110
TasI	AATT	5 cut(s)	294, 742, 867, 885, 923
TauI	GCSGC	6 cut(s)	171, 219, 473, 560, 563, 566
TfiI	GAWTC	3 cut(s)	649, 828, 895
TscAI	CASTG	4 cut(s)	229, 394, 558, 694
TseI	GCWGC	2 cut(s)	63, 371
TspDTI	ATGAA	6 cut(s)	30, 175, 241, 259, 1035, 1047
TspGWI	ACGGA	1 cut(s)	342
TspRI	CASTG	4 cut(s)	229, 394, 558, 694
XapI	RAATTY	2 cut(s)	742, 923
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	445
XmnI	GAANNNNTTC	1 cut(s)	924
XspI	CTAG	3 cut(s)	200, 899, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.