Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Forward (+)

33610578 .. 33613978

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g34010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCAAATGGAAGCCGATCATGTTGAAAAACGTAACGCTGCCATGAAAACCGTCCTCCTCATTATAAGCTGTGCACTTCTATCCGTAGGCACATGTGGAGGTCCATTGGTAATGCGCCTCTACTTCATCCATGGAGGCAAGCGTGTCTGGCTTTCGAGCTGGCTCGAAACCGGCGGCTGGCCGATCATCTTCATCCCCATAGCCATGGCTTATTGCTACCGCCGCAAGACTGAAGGCCCATCAACAAAACTTTTCCTCATGAAGCTCCCACTCTTTACAGCCTCCGCTGTCATCGGCGTCCTCACCGGCCTGGACGACTACCTTTACGCCTACGGCGTTGCCCGACTTCCTATCTCCACGTCAGCCCTAATCCTCGCTAGCCATCTAGCCTTCACTGCCCTTTTTGCCTTTATTCTTGTGAAGCAGAAGTTCACCTCATTCTCCATAAACGCCATCGTGTTGTTGACTATTGGCGCGGTTGTTTTGGGGTTGAATACCAGCTCTGATCGTCCAGAGGGGGAATCGAATAAGGAGTATATTGCCGGATTTTTTATGACGGTGGCGGCGGCTGCTTTGTATGGATTTGTGTTGCCGTTGATAGAGTTGACATACAAGAGGGCCAAGCAGACCATTACATATGCTTTGGTTCTGGAGGTTCAATTGGTTATGTGTTTGTTTGCTACTCTTTTTTGCACTGTGGGAATGCTTATCGACAACGACTTCAAGGTTATTCCAAGAGAAGCAAGAAAATTCGATCTTGGGGAAACCAGATACTATGTGGTGCTGGTATTTAGTGCTATATTATGGCAAGGTTTTTTTCTGGGAGCCATAGGAATCATCTTCTGCGCCTCATCTTTGCTTTCTGGAATTGTGATTGCTTCTTTAATCCCCGTAACTCAGATCCTAGCAGTTATTTTTTACCATGAAAAATTCCAAGCAGAAAAGGGAGTCTCTCTTGCACTTTCTCTCTGGGGATTTATCTCTTACTTCTATGGCGAGAGAAAACACAAGAAGCAAAAGGAAAAGGAAAAGAAAATGGAAACCGAAATTGCAGAGAAAAAGAAAGACACACCAGAAACAATACAAGTTCCTCAACAGGGAACCCTAGCTACCCAGCAGTCACAAACCCTACTTGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

381

Amino Acids

42.14

Weight (kDa)

9.11

Isoelectric Point (pI)

33.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	18 - 338	3.6e-119	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
AccII	CGCG	1 cut(s)	476
AciI	CCGC	7 cut(s)	174, 220, 223, 285, 476, 563, 566
AclWI	GGATC	1 cut(s)	895
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	749, 929
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	177, 1097
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	26, 493, 659, 724
AjiI	CACGTC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	5 cut(s)	69, 159, 265, 501, 1109
AluI	AGCT	5 cut(s)	69, 159, 265, 501, 1109
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	1 cut(s)	955
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	895
AoxI	GGCC	4 cut(s)	179, 235, 307, 618
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	2 cut(s)	38, 569
ApoI	RAATTY	2 cut(s)	749, 929
AspLEI	GCGC	3 cut(s)	117, 476, 848
AspS9I	GGNCC	3 cut(s)	101, 236, 618
AsuHPI	GGTGA	2 cut(s)	295, 424
AsuNHI	GCTAGC	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	25, 556
BccI	CCATC	3 cut(s)	247, 390, 461
BceAI	ACGGC	2 cut(s)	349, 577
BciT130I	CCWGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	4 cut(s)	378, 386, 905, 1106
BisI	GCNGC	6 cut(s)	39, 175, 223, 564, 567, 570
BlsI	GCNGC	6 cut(s)	40, 176, 224, 565, 568, 571
Bme1390I	CCNGG	1 cut(s)	311
Bme18I	GGWCC	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	3 cut(s)	101, 236, 618
BmiI	GGNNCC	2 cut(s)	826, 1102
BmrFI	CCNGG	1 cut(s)	311
BmtI	GCTAGC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	671
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	130, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 1097
Bse118I	RCCGGY	2 cut(s)	170, 305
BseBI	CCWGG	1 cut(s)	311
BseDI	CCNNGG	2 cut(s)	130, 204
BseGI	GGATG	2 cut(s)	126, 192
BseLI	CCNNNNNNNGG	2 cut(s)	177, 1097
BseMII	CTCAG	1 cut(s)	911
BseRI	GAGGAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	25, 556
BseYI	CCCAGC	1 cut(s)	1113
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	4 cut(s)	181, 237, 309, 620
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	3 cut(s)	171, 306, 543
BslI	CCNNNNNNNGG	2 cut(s)	177, 1097
BsmAI	GTCTC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	4 cut(s)	181, 237, 309, 620
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	5 cut(s)	16, 183, 505, 754, 900
Bsp19I	CCATGG	2 cut(s)	130, 204
BspACI	CCGC	7 cut(s)	174, 220, 223, 285, 476, 563, 566
BspANI	GGCC	4 cut(s)	181, 237, 309, 620
BspCNI	CTCAG	1 cut(s)	910
BspFNI	CGCG	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	826, 1102
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	895
BsrFI	RCCGGY	2 cut(s)	170, 305
BssAI	RCCGGY	2 cut(s)	170, 305
BssECI	CCNNGG	2 cut(s)	130, 204
BssMI	GATC	5 cut(s)	16, 183, 505, 754, 900
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	130, 204
Bst2UI	CCWGG	1 cut(s)	311
Bst4CI	ACNGT	3 cut(s)	52, 559, 697
BstACI	GRCGYC	1 cut(s)	297
BstC8I	GCNNGC	4 cut(s)	140, 161, 179, 379
BstDEI	CTNAG	1 cut(s)	897
BstDSI	CCRYGG	2 cut(s)	130, 204
BstF5I	GGATG	2 cut(s)	126, 192
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	3 cut(s)	117, 476, 848
BstKTI	GATC	5 cut(s)	19, 186, 508, 757, 903
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	5 cut(s)	16, 183, 505, 754, 900
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 222, 395, 404, 569
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	96
BstSCI	CCNGG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	76
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	25, 556
BstX2I	RGATCY	1 cut(s)	900
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	900
BsuRI	GGCC	4 cut(s)	181, 237, 309, 620
BtgI	CCRYGG	2 cut(s)	130, 204
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	126, 192
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 693
Cac8I	GCNNGC	4 cut(s)	140, 161, 179, 379
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	3 cut(s)	117, 476, 848
Cfr10I	RCCGGY	2 cut(s)	170, 305
Cfr13I	GGNCC	3 cut(s)	101, 236, 618
CseI	GACGC	1 cut(s)	286
CviAII	CATG	7 cut(s)	20, 43, 93, 131, 205, 259, 923
DdeI	CTNAG	1 cut(s)	897
DpnI	GATC	5 cut(s)	18, 185, 507, 756, 902
DpnII	GATC	5 cut(s)	16, 183, 505, 754, 900
EaeI	YGGCCR	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	130, 204
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	2 cut(s)	130, 204
ErhI	CCWWGG	2 cut(s)	130, 204
FaeI	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
FatI	CATG	7 cut(s)	19, 42, 92, 130, 204, 258, 922
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	6 cut(s)	39, 175, 223, 564, 567, 570
FokI	GGATG	2 cut(s)	113, 179
Fsp4HI	GCNGC	6 cut(s)	39, 175, 223, 564, 567, 570
FspBI	CTAG	4 cut(s)	378, 386, 905, 1106
GlaI	GCGC	3 cut(s)	116, 475, 847
GluI	GCNGC	6 cut(s)	39, 175, 223, 564, 567, 570
GsaI	CCCAGC	1 cut(s)	1117
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	4 cut(s)	181, 237, 309, 620
HapII	CCGG	3 cut(s)	171, 306, 543
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	3 cut(s)	117, 476, 848
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
Hin6I	GCGC	3 cut(s)	115, 474, 846
HinP1I	GCGC	3 cut(s)	115, 474, 846
HincII	GTYRAC	2 cut(s)	465, 606
HindII	GTYRAC	2 cut(s)	465, 606
HinfI	GANTC	3 cut(s)	521, 834, 948
HpaII	CCGG	3 cut(s)	171, 306, 543
HphI	GGTGA	2 cut(s)	295, 424
Hpy166II	GTNNAC	4 cut(s)	74, 432, 465, 606
Hpy188I	TCNGA	2 cut(s)	505, 900
Hpy188III	TCNNGA	4 cut(s)	259, 512, 650, 864
Hpy8I	GTNNAC	4 cut(s)	74, 432, 465, 606
HpyAV	CCTTC	2 cut(s)	227, 400
HpyCH4III	ACNGT	3 cut(s)	52, 559, 697
HpyCH4IV	ACGT	2 cut(s)	31, 359
HpyCH4V	TGCA	5 cut(s)	4, 74, 693, 959, 1052
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 222, 395, 404, 569
HpyF3I	CTNAG	1 cut(s)	897
HpySE526I	ACGT	2 cut(s)	31, 359
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
HspAI	GCGC	3 cut(s)	115, 474, 846
Kzo9I	GATC	5 cut(s)	16, 183, 505, 754, 900
LmnI	GCTCC	2 cut(s)	270, 824
Lsp1109I	GCAGC	2 cut(s)	25, 556
MaeI	CTAG	4 cut(s)	378, 386, 905, 1106
MaeII	ACGT	2 cut(s)	31, 359
MaeIII	GTNAC	3 cut(s)	32, 892, 1119
MalI	GATC	5 cut(s)	18, 185, 507, 756, 902
MboI	GATC	5 cut(s)	16, 183, 505, 754, 900
MboII	GAAGA	2 cut(s)	181, 832
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	1 cut(s)	900
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	5 cut(s)	659, 749, 867, 929, 1047
MlyI	GAGTC	1 cut(s)	957
MseI	TTAA	2 cut(s)	884, 1141
MslI	CAYNNNNRTG	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	3 cut(s)	171, 306, 543
MspR9I	CCNGG	1 cut(s)	311
MunI	CAATTG	1 cut(s)	659
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	5 cut(s)	148, 222, 395, 404, 569
NcoI	CCATGG	2 cut(s)	130, 204
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	5 cut(s)	16, 183, 505, 754, 900
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
NlaIV	GGNNCC	2 cut(s)	826, 1102
NmuCI	GTSAC	1 cut(s)	1119
NspI	RCATGY	1 cut(s)	96
PagI	TCATGA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	521, 834
PkrI	GCNGC	6 cut(s)	40, 176, 224, 565, 568, 571
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
PscI	ACATGT	1 cut(s)	92
PsiI	TTATAA	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	309
PspFI	CCCAGC	1 cut(s)	1113
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	826, 1102
PspPI	GGNCC	3 cut(s)	101, 236, 618
PsrI	GAACNNNNNNTAC	2 cut(s)	1093, 1125
PsuI	RGATCY	1 cut(s)	900
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	884, 1141
SatI	GCNGC	6 cut(s)	39, 175, 223, 564, 567, 570
Sau3AI	GATC	5 cut(s)	16, 183, 505, 754, 900
Sau96I	GGNCC	3 cut(s)	101, 236, 618
SchI	GAGTC	1 cut(s)	957
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	76
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	659, 749, 867, 929, 1047
SsiI	CCGC	7 cut(s)	174, 220, 223, 285, 476, 563, 566
SspMI	CTAG	4 cut(s)	378, 386, 905, 1106
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	2 cut(s)	130, 204
TaaI	ACNGT	3 cut(s)	52, 559, 697
TaiI	ACGT	2 cut(s)	34, 362
TaqI	TCGA	5 cut(s)	155, 165, 524, 711, 753
TasI	AATT	5 cut(s)	659, 749, 867, 929, 1047
TauI	GCSGC	4 cut(s)	177, 225, 566, 569
TfiI	GAWTC	2 cut(s)	521, 834
Tru1I	TTAA	2 cut(s)	884, 1141
Tru9I	TTAA	2 cut(s)	884, 1141
TscAI	CASTG	2 cut(s)	400, 700
TseFI	GTSAC	1 cut(s)	1119
TseI	GCWGC	2 cut(s)	38, 569
Tsp45I	GTSAC	1 cut(s)	1119
TspDTI	ATGAA	5 cut(s)	59, 115, 181, 275, 939
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	2 cut(s)	400, 700
VneI	GTGCAC	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	749, 929
XceI	RCATGY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XspI	CTAG	4 cut(s)	378, 386, 905, 1106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.