Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Reverse (-)

26429444 .. 26431888

Gene Structure 2445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g36060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCAAATGGAAACCACCGATAATGAGCAACGTAAAGCCGCCGCCCTGAAAAGGTTGCTGCTCATTCTGAGCAGCGTACTCTTATCCATAGGCACCTGCGGCGGCCCTTTGATAATGCGCCTCTACTTCATCCACGGCGGCAAACGCGTCTGGCTTTCGAGCATGCTCGAAACCGGTGGCTGGCCTGTGATCCTCGTCCCAATAGCCATAGCCTACTACCACCGCCGCAAAAACCAAGCTCCAACCGACCCACCAACCAAGCTCTTCTTCATGAAGCTTCCTCTCTTCGTTGCCTCTGCTGTCATCGGCGTTCTCACCGGCCTCGACGACTACCTCTACGCCTACGGCGTTGCACGCCTCCCCGTCTCCACCTCAGCCCTGATCATCGCTGCGCAGTTAGCTTTCACGGCCTTGTTTGCCTTCATACTCGTGAAGCAGAAGTTCACGTCGTATTCGATAAACGCCGTCGTGCTGCTGACGGTGGGGGCGGCGGTTCTTGGCCTGAACACGAGCTCGGACCGGCCCAAGGGGGAGTCGAACGCGCAGTACATGCTAGGGTTTGTGATGACGGTGGCCGCGGCGGCGTTGTATGGGTTTGTGCTGCCGTTGGTGGAGTTGATGTATAAGAAGGCCAAGCAGAACATCACGTACGCTTTGGTTTTGGAGATTCAGATGGTTATGAGTTTGTTTGCTACCATCTTCTGTACGGTTGGGATGCTGGTGAACAATGACTTCAAGGTGATTCCTAGAGAAGCGAGGAAATTCGAGCTTGGGGAGACTACGTACTATGTGGTGCTTGTAGTGAGTGCAATAGTCTGGCAAACTTTCTTCTTGGGAGCCATAGGACTCATCTTCTGTGCCTCGTCTCTTCTATCCGGAATCGTAATCGCTGTTCTGCTCCCGGTAACTGAGATCTTTGCTGTTATTTTCTACCACGAAAAGTTCCAAGCAGAAAAGGGGGTCTCTCTTGCACTCTCCCTCTGGGGGTTTGTCTCATACTTCTACGGCGAAATCAAACACAACAAACAAAAGAAGCAAGCAGATGCAGTTAAGGAAAAGGAAAACAACAAAGAAGGTTGTACCCCCGACGTAGAAAACCTTCAGACAGTTCCAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

374

Amino Acids

41.11

Weight (kDa)

9.14

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	20 - 342	5e-120	Purine nucleobase transmembrane transport
EamA	PF00892	65 - 166	1.7e-07	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	104
Acc16I	TGCGCA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	104
AccB1I	GGYRCC	1 cut(s)	92
AccII	CGCG	3 cut(s)	147, 542, 578
AccIII	TCCGGA	1 cut(s)	875
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	761
AcuI	CTGAAG	1 cut(s)	1085
AfaI	GTAC	6 cut(s)	78, 548, 650, 706, 785, 1081
AfiI	CCNNNNNNNGG	4 cut(s)	51, 180, 526, 984
AflIII	ACRYGT	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	736
AjiI	CACGTC	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	239, 262, 277, 401, 513, 769
AluI	AGCT	6 cut(s)	239, 262, 277, 401, 513, 769
Alw21I	GWGCWC	1 cut(s)	515
Alw26I	GTCTC	5 cut(s)	370, 770, 870, 967, 997
AlwI	GGATC	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	875
AoxI	GGCC	8 cut(s)	103, 182, 319, 408, 499, 521, 573, 630
ApeKI	GCWGC	5 cut(s)	58, 72, 389, 472, 601
ApoI	RAATTY	1 cut(s)	761
AsiGI	ACCGGT	1 cut(s)	173
Asp700I	GAANNNNTTC	1 cut(s)	1098
AspLEI	GCGC	3 cut(s)	120, 394, 544
AspS9I	GGNCC	3 cut(s)	104, 517, 522
AsuC2I	CCSGG	1 cut(s)	902
AsuHPI	GGTGA	3 cut(s)	307, 733, 751
AvaII	GGWCC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	515
BarI	GAAGNNNNNNTAC	2 cut(s)	1083, 1115
BauI	CACGAG	2 cut(s)	428, 508
Bbv12I	GWGCWC	1 cut(s)	515
BbvCI	CCTCAGC	1 cut(s)	373
BbvI	GCAGC	5 cut(s)	45, 84, 376, 459, 588
BccI	CCATC	2 cut(s)	667, 704
BceAI	ACGGC	6 cut(s)	151, 361, 423, 449, 589, 1021
BclI	TGATCA	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	902
BcoDI	GTCTC	5 cut(s)	370, 770, 870, 967, 997
BfaI	CTAG	2 cut(s)	554, 747
BfuAI	ACCTGC	1 cut(s)	104
BglI	GCCNNNNNGGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	912
Bme1390I	CCNGG	1 cut(s)	902
Bme18I	GGWCC	1 cut(s)	517
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	3 cut(s)	104, 517, 522
BmiI	GGNNCC	2 cut(s)	94, 838
BmrFI	CCNGG	1 cut(s)	902
BmsI	GCATC	2 cut(s)	705, 1033
Bpu10I	CCTNAGC	1 cut(s)	373
BpuMI	CCSGG	1 cut(s)	902
BsaAI	YACGTR	2 cut(s)	648, 783
BsaI	GGTCTC	1 cut(s)	967
BsaJI	CCNNGG	3 cut(s)	133, 525, 576
BsaWI	WCCGGW	2 cut(s)	173, 875
BsaXI	ACNNNNNCTCC	4 cut(s)	605, 635, 767, 797
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 180, 526, 984
Bse118I	RCCGGY	3 cut(s)	173, 317, 519
BseAI	TCCGGA	1 cut(s)	875
BseDI	CCNNGG	3 cut(s)	133, 525, 576
BseGI	GGATG	2 cut(s)	129, 720
BseLI	CCNNNNNNNGG	4 cut(s)	51, 180, 526, 984
BseMII	CTCAG	3 cut(s)	59, 387, 900
BseXI	GCAGC	5 cut(s)	45, 84, 376, 459, 588
Bsh1236I	CGCG	3 cut(s)	147, 542, 578
BshFI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 632
BshNI	GGYRCC	1 cut(s)	92
BshTI	ACCGGT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	515
BsiSI	CCGG	5 cut(s)	174, 318, 520, 876, 902
BsiWI	CGTACG	1 cut(s)	648
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	4 cut(s)	51, 180, 526, 984
BsmAI	GTCTC	5 cut(s)	370, 770, 870, 967, 997
BsmBI	CGTCTC	2 cut(s)	370, 870
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 632
Bso31I	GGTCTC	1 cut(s)	967
Bsp1286I	GDGCHC	1 cut(s)	515
Bsp13I	TCCGGA	1 cut(s)	875
Bsp143I	GATC	3 cut(s)	189, 381, 912
BspANI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 632
BspCNI	CTCAG	3 cut(s)	60, 386, 901
BspEI	TCCGGA	1 cut(s)	875
BspFNI	CGCG	3 cut(s)	147, 542, 578
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	2 cut(s)	94, 838
BspMI	ACCTGC	1 cut(s)	104
BspPI	GGATC	1 cut(s)	184
BspQI	GCTCTTC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	967
BsrFI	RCCGGY	3 cut(s)	173, 317, 519
BssAI	RCCGGY	3 cut(s)	173, 317, 519
BssECI	CCNNGG	3 cut(s)	133, 525, 576
BssMI	GATC	3 cut(s)	189, 381, 912
BssSI	CACGAG	2 cut(s)	428, 508
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	2 cut(s)	428, 508
Bst4CI	ACNGT	4 cut(s)	481, 571, 709, 1108
Bst6I	CTCTTC	3 cut(s)	269, 290, 873
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstBAI	YACGTR	2 cut(s)	648, 783
BstC8I	GCNNGC	4 cut(s)	164, 182, 355, 1038
BstDEI	CTNAG	3 cut(s)	68, 373, 909
BstDSI	CCRYGG	2 cut(s)	133, 576
BstF5I	GGATG	2 cut(s)	129, 720
BstFNI	CGCG	3 cut(s)	147, 542, 578
BstHHI	GCGC	3 cut(s)	120, 394, 544
BstKTI	GATC	3 cut(s)	192, 384, 915
BstMAI	GTCTC	5 cut(s)	370, 770, 870, 967, 997
BstMBI	GATC	3 cut(s)	189, 381, 912
BstMWI	GCNNNNNNNGC	8 cut(s)	99, 144, 354, 398, 407, 416, 550, 581
BstNSI	RCATGY	2 cut(s)	166, 553
BstSCI	CCNGG	1 cut(s)	900
BstSNI	TACGTA	1 cut(s)	783
BstUI	CGCG	3 cut(s)	147, 542, 578
BstV1I	GCAGC	5 cut(s)	45, 84, 376, 459, 588
BstX2I	RGATCY	1 cut(s)	912
BstYI	RGATCY	1 cut(s)	912
BsuRI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 632
BtgI	CCRYGG	2 cut(s)	133, 576
BtgZI	GCGATG	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	129, 720
BveI	ACCTGC	1 cut(s)	104
Cac8I	GCNNGC	4 cut(s)	164, 182, 355, 1038
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	3 cut(s)	120, 394, 544
Cfr10I	RCCGGY	3 cut(s)	173, 317, 519
Cfr13I	GGNCC	3 cut(s)	104, 517, 522
Cfr42I	CCGCGG	1 cut(s)	579
CpoI	CGGWCCG	1 cut(s)	517
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	6 cut(s)	77, 547, 649, 705, 784, 1080
CspAI	ACCGGT	1 cut(s)	173
CspI	CGGWCCG	1 cut(s)	517
CviAII	CATG	4 cut(s)	163, 271, 550, 1119
CviQI	GTAC	6 cut(s)	77, 547, 649, 705, 784, 1080
DdeI	CTNAG	3 cut(s)	68, 373, 909
DpnI	GATC	3 cut(s)	191, 383, 914
DpnII	GATC	3 cut(s)	189, 381, 912
EaeI	YGGCCR	1 cut(s)	573
Eam1104I	CTCTTC	3 cut(s)	269, 290, 873
EarI	CTCTTC	3 cut(s)	269, 290, 873
Ecl136II	GAGCTC	1 cut(s)	513
Eco105I	TACGTA	1 cut(s)	783
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	515
Eco31I	GGTCTC	1 cut(s)	967
Eco47I	GGWCC	1 cut(s)	517
Eco53kI	GAGCTC	1 cut(s)	513
Eco57I	CTGAAG	1 cut(s)	1085
EcoICRI	GAGCTC	1 cut(s)	513
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	525
Esp3I	CGTCTC	2 cut(s)	370, 870
FaeI	CATG	4 cut(s)	166, 274, 553, 1122
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	4 cut(s)	162, 270, 549, 1118
FbaI	TGATCA	1 cut(s)	381
FokI	GGATG	2 cut(s)	116, 727
FriOI	GRGCYC	1 cut(s)	515
FspBI	CTAG	2 cut(s)	554, 747
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	3 cut(s)	119, 393, 543
HaeIII	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 632
HapII	CCGG	5 cut(s)	174, 318, 520, 876, 902
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	3 cut(s)	120, 394, 544
Hin1II	CATG	4 cut(s)	166, 274, 553, 1122
Hin6I	GCGC	3 cut(s)	118, 392, 542
HinP1I	GCGC	3 cut(s)	118, 392, 542
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	5 cut(s)	533, 667, 742, 846, 879
HpaII	CCGG	5 cut(s)	174, 318, 520, 876, 902
HphI	GGTGA	3 cut(s)	307, 733, 751
Hpy166II	GTNNAC	2 cut(s)	444, 724
Hpy188I	TCNGA	4 cut(s)	69, 517, 672, 1104
Hpy188III	TCNNGA	3 cut(s)	271, 430, 876
Hpy8I	GTNNAC	2 cut(s)	444, 724
Hpy99I	CGWCG	4 cut(s)	329, 451, 470, 1091
HpyAV	CCTTC	4 cut(s)	430, 622, 1067, 1109
HpyCH4III	ACNGT	4 cut(s)	481, 571, 709, 1108
HpyCH4IV	ACGT	5 cut(s)	31, 446, 647, 782, 1089
HpyCH4V	TGCA	5 cut(s)	4, 353, 809, 971, 1046
HpyF10VI	GCNNNNNNNGC	8 cut(s)	99, 144, 354, 398, 407, 416, 550, 581
HpyF3I	CTNAG	3 cut(s)	68, 373, 909
HpySE526I	ACGT	5 cut(s)	31, 446, 647, 782, 1089
Hsp92II	CATG	4 cut(s)	166, 274, 553, 1122
HspAI	GCGC	3 cut(s)	118, 392, 542
Kpn2I	TCCGGA	1 cut(s)	875
Ksp22I	TGATCA	1 cut(s)	381
KspI	CCGCGG	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	189, 381, 912
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	3 cut(s)	244, 836, 903
Lsp1109I	GCAGC	5 cut(s)	45, 84, 376, 459, 588
LweI	GCATC	2 cut(s)	705, 1033
MaeI	CTAG	2 cut(s)	554, 747
MaeII	ACGT	5 cut(s)	31, 446, 647, 782, 1089
MaeIII	GTNAC	1 cut(s)	904
MalI	GATC	3 cut(s)	191, 383, 914
MboI	GATC	3 cut(s)	189, 381, 912
MboII	GAAGA	7 cut(s)	256, 259, 277, 691, 820, 844, 860
MflI	RGATCY	1 cut(s)	912
MhlI	GDGCHC	1 cut(s)	515
MluCI	AATT	1 cut(s)	761
MluI	ACGCGT	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	542, 840
MmeI	TCCRAC	1 cut(s)	266
MroI	TCCGGA	1 cut(s)	875
MroXI	GAANNNNTTC	1 cut(s)	1098
MseI	TTAA	1 cut(s)	1050
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	5 cut(s)	174, 318, 520, 876, 902
MspR9I	CCNGG	1 cut(s)	902
MvnI	CGCG	3 cut(s)	147, 542, 578
MwoI	GCNNNNNNNGC	8 cut(s)	99, 144, 354, 398, 407, 416, 550, 581
NciI	CCSGG	1 cut(s)	902
NdeII	GATC	3 cut(s)	189, 381, 912
NlaIII	CATG	4 cut(s)	166, 274, 553, 1122
NlaIV	GGNNCC	2 cut(s)	94, 838
NsbI	TGCGCA	1 cut(s)	393
NspI	RCATGY	2 cut(s)	166, 553
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	104
PciSI	GCTCTTC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	2 cut(s)	345, 452
PdmI	GAANNNNTTC	1 cut(s)	1098
PfeI	GAWTC	3 cut(s)	667, 742, 879
Pfl23II	CGTACG	1 cut(s)	648
PinAI	ACCGGT	1 cut(s)	173
PleI	GAGTC	2 cut(s)	541, 840
PpsI	GAGTC	2 cut(s)	541, 840
Ppu21I	YACGTR	2 cut(s)	648, 783
Psp124BI	GAGCTC	1 cut(s)	515
PspLI	CGTACG	1 cut(s)	648
PspN4I	GGNNCC	2 cut(s)	94, 838
PspPI	GGNCC	3 cut(s)	104, 517, 522
PsrI	GAACNNNNNNTAC	6 cut(s)	530, 562, 632, 664, 876, 908
PsuI	RGATCY	1 cut(s)	912
RsaI	GTAC	6 cut(s)	78, 548, 650, 706, 785, 1081
RsaNI	GTAC	6 cut(s)	77, 547, 649, 705, 784, 1080
RseI	CAYNNNNRTG	1 cut(s)	428
Rsr2I	CGGWCCG	1 cut(s)	517
RsrII	CGGWCCG	1 cut(s)	517
SacI	GAGCTC	1 cut(s)	515
SacII	CCGCGG	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	1050
Sau3AI	GATC	3 cut(s)	189, 381, 912
Sau96I	GGNCC	3 cut(s)	104, 517, 522
SchI	GAGTC	2 cut(s)	542, 840
ScrFI	CCNGG	1 cut(s)	902
SduI	GDGCHC	1 cut(s)	515
SfaNI	GCATC	2 cut(s)	705, 1033
Sfr303I	CCGCGG	1 cut(s)	579
SgrBI	CCGCGG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	428
SnaBI	TACGTA	1 cut(s)	783
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	1 cut(s)	761
SspMI	CTAG	2 cut(s)	554, 747
SstI	GAGCTC	1 cut(s)	515
StyD4I	CCNGG	1 cut(s)	900
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	4 cut(s)	481, 571, 709, 1108
TaiI	ACGT	5 cut(s)	34, 449, 650, 785, 1092
TaqI	TCGA	6 cut(s)	158, 168, 324, 455, 536, 765
TasI	AATT	1 cut(s)	761
TatI	WGTACW	1 cut(s)	546
TfiI	GAWTC	3 cut(s)	667, 742, 879
Tru1I	TTAA	1 cut(s)	1050
Tru9I	TTAA	1 cut(s)	1050
TseI	GCWGC	5 cut(s)	58, 72, 389, 472, 601
TspDTI	ATGAA	4 cut(s)	118, 259, 287, 412
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	761
XceI	RCATGY	2 cut(s)	166, 553
XmnI	GAANNNNTTC	1 cut(s)	1098
XspI	CTAG	2 cut(s)	554, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.