Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Reverse (-)

58495478 .. 58498791

Gene Structure 3314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCAAATGGAAACCACTGAGGATGAGCAACGTAAAGCCACCGCCCTGAAAAGGTTGCTGCTCATTCTGAGCTGCGTATTCTTATCCATTGGCAACTGCGGCGGCCCTTTGATAATGCGCCTCTACTTCATCCACGGCGGCAAGCGCGTCTGGCTTTCGAGCATGCTCGAAACCGGTGGCTGTCCCATAATCCTCATCCCTATAGCCATAGCCTACTACCACCGCCGCAAAAACCAAGCTCCAACTGAACCACCAACCAAGCTCTTCTTCATGAAGTTCCCTCTCTTCGTTGCCTCCGCCGTCATCGGCGTCCTCACCGGCCTCGACGACTACCTGTACGCCTACGCGGCTCAGCTGGCTTTCACTGCCTTGTTTGCCTTCATACTTGTGAAGCAGAAGTTCACGTCGTATTCCATAAACGCCATCGTGTTGCTGACGGTGGGGGCGGCGGTTCTGGGCCTGAACACGAACTCGGACCGGCCCGAGGGGGAGTCGAATGCGCAGTACATGCTCGGGTTTATGATGACGGTGGCCGCGGCGGCGTTGTATGGGTTTGTGTTGCCGTTGGTGGAGTTGATGTACAAGAAAGCCAAGCAGAACATAACGTATGCTTTGGTTTTGGAGATTCAGTTGGTTATGTGTTTGTTTGCTACCATTTTCTGCACTGTTGGGATGCTGGTCAACAATGATTTCAAGGTAATTCCAAGAGAAGCAAGGAAATTCGAGCTTGGGGAGACTACCTACTATGTGGTGCTTGTAGTGAGTGCTATAATCTGGCAGGGTTTCTTCTTGGGAGCCATAGGAATCATCTTCTGTGCCTCGTCTCTGCTATCCGGCATCGTAATCGCTGTTCTGCTCCCGATAACAGAGATCTTTGCAGTTATTTTCTACCACGAAAAGTTCCAAGCAGAAAAGGGCGTTTCTCTTGTGCTCTCCCTCTGGGGATTTGTCTCATACTTCTACGGCGAAATCAAACACAACAAGGAAAGCAAGCGAGTTAAGAAAAAGGAAAACAACAAGGACAAAGTCGTTCTTGTGCGGCAACTACCCATCTTAGCCCTAGATCTCTCATCATCTCTTGCTGGAAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

364

Amino Acids

40.53

Weight (kDa)

9.26

Isoelectric Point (pI)

36.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	20 - 328	2.5e-108	Purine nucleobase transmembrane transport
Nuc_sug_transp	PF04142	111 - 251	2e-06	Nucleotide-sugar transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	501
AccII	CGCG	3 cut(s)	147, 347, 536
AcoI	YGGCCR	1 cut(s)	531
AcsI	RAATTY	1 cut(s)	719
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	3 cut(s)	338, 506, 581
AfiI	CCNNNNNNNGG	2 cut(s)	51, 484
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	694
AjiI	CACGTC	1 cut(s)	405
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	5 cut(s)	72, 239, 262, 355, 727
AluI	AGCT	5 cut(s)	72, 239, 262, 355, 727
Alw21I	GWGCWC	1 cut(s)	933
Alw26I	GTCTC	3 cut(s)	728, 828, 955
Ama87I	CYCGRG	2 cut(s)	482, 512
AoxI	GGCC	5 cut(s)	103, 319, 457, 479, 531
ApeKI	GCWGC	2 cut(s)	58, 72
ApoI	RAATTY	1 cut(s)	719
AsiGI	ACCGGT	1 cut(s)	173
AspLEI	GCGC	3 cut(s)	120, 147, 502
AspS9I	GGNCC	4 cut(s)	104, 457, 475, 480
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	2 cut(s)	482, 512
AvaII	GGWCC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	933
BbvI	GCAGC	2 cut(s)	45, 59
BccI	CCATC	2 cut(s)	431, 1058
BceAI	ACGGC	4 cut(s)	151, 284, 547, 979
BcgI	CGANNNNNNTGC	2 cut(s)	826, 860
BcoDI	GTCTC	3 cut(s)	728, 828, 955
BfaI	CTAG	1 cut(s)	1061
BfmI	CTRYAG	1 cut(s)	201
BglI	GCCNNNNNGGC	2 cut(s)	347, 539
BglII	AGATCT	2 cut(s)	870, 1063
BlpI	GCTNAGC	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	475
BmeT110I	CYCGRG	2 cut(s)	482, 512
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	4 cut(s)	104, 457, 475, 480
BmiI	GGNNCC	1 cut(s)	796
BmsI	GCATC	2 cut(s)	663, 846
Bpu1102I	GCTNAGC	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	133, 483, 534
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	4 cut(s)	563, 593, 614, 644
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 484
Bse118I	RCCGGY	3 cut(s)	173, 317, 477
BseDI	CCNNGG	3 cut(s)	133, 483, 534
BseGI	GGATG	4 cut(s)	28, 129, 195, 678
BseLI	CCNNNNNNNGG	2 cut(s)	51, 484
BseMII	CTCAG	3 cut(s)	9, 59, 365
BseXI	GCAGC	2 cut(s)	45, 59
BsgI	GTGCAG	1 cut(s)	646
Bsh1236I	CGCG	3 cut(s)	147, 347, 536
BshFI	GGCC	5 cut(s)	105, 321, 459, 481, 533
BshTI	ACCGGT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	933
BsiHKCI	CYCGRG	2 cut(s)	482, 512
BsiSI	CCGG	4 cut(s)	174, 318, 478, 834
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	51, 484
BsmAI	GTCTC	3 cut(s)	728, 828, 955
BsmBI	CGTCTC	1 cut(s)	828
BsmFI	GGGAC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	5 cut(s)	105, 321, 459, 481, 533
BsoBI	CYCGRG	2 cut(s)	482, 512
Bsp1286I	GDGCHC	1 cut(s)	933
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	2 cut(s)	870, 1063
Bsp1720I	GCTNAGC	1 cut(s)	351
BspANI	GGCC	5 cut(s)	105, 321, 459, 481, 533
BspCNI	CTCAG	3 cut(s)	10, 60, 364
BspFNI	CGCG	3 cut(s)	147, 347, 536
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	796
BspQI	GCTCTTC	1 cut(s)	269
BsrFI	RCCGGY	3 cut(s)	173, 317, 477
BsrGI	TGTACA	1 cut(s)	579
BssAI	RCCGGY	3 cut(s)	173, 317, 477
BssECI	CCNNGG	3 cut(s)	133, 483, 534
BssMI	GATC	2 cut(s)	870, 1063
BssNI	GRCGYC	1 cut(s)	309
Bst4CI	ACNGT	3 cut(s)	439, 529, 667
Bst6I	CTCTTC	2 cut(s)	269, 290
BstACI	GRCGYC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	508
BstAUI	TGTACA	1 cut(s)	579
BstC8I	GCNNGC	4 cut(s)	143, 164, 357, 992
BstDEI	CTNAG	4 cut(s)	18, 68, 351, 1054
BstDSI	CCRYGG	2 cut(s)	133, 534
BstF5I	GGATG	4 cut(s)	28, 129, 195, 678
BstFNI	CGCG	3 cut(s)	147, 347, 536
BstHHI	GCGC	3 cut(s)	120, 147, 502
BstKTI	GATC	2 cut(s)	873, 1066
BstMAI	GTCTC	3 cut(s)	728, 828, 955
BstMBI	GATC	2 cut(s)	870, 1063
BstMWI	GCNNNNNNNGC	9 cut(s)	99, 144, 151, 347, 356, 365, 374, 508, 539
BstNSI	RCATGY	2 cut(s)	166, 511
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	3 cut(s)	147, 347, 536
BstV1I	GCAGC	2 cut(s)	45, 59
BstX2I	RGATCY	2 cut(s)	870, 1063
BstYI	RGATCY	2 cut(s)	870, 1063
BsuRI	GGCC	5 cut(s)	105, 321, 459, 481, 533
BtgI	CCRYGG	2 cut(s)	133, 534
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	4 cut(s)	28, 129, 195, 678
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	15, 363, 663
Cac8I	GCNNGC	4 cut(s)	143, 164, 357, 992
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	3 cut(s)	120, 147, 502
Cfr10I	RCCGGY	3 cut(s)	173, 317, 477
Cfr13I	GGNCC	4 cut(s)	104, 457, 475, 480
Cfr42I	CCGCGG	1 cut(s)	537
CpoI	CGGWCCG	1 cut(s)	475
CseI	GACGC	2 cut(s)	136, 298
Csp6I	GTAC	3 cut(s)	337, 505, 580
CspAI	ACCGGT	1 cut(s)	173
CspI	CGGWCCG	1 cut(s)	475
CviAII	CATG	3 cut(s)	163, 271, 508
CviQI	GTAC	3 cut(s)	337, 505, 580
DdeI	CTNAG	4 cut(s)	18, 68, 351, 1054
DpnI	GATC	2 cut(s)	872, 1065
DpnII	GATC	2 cut(s)	870, 1063
EaeI	YGGCCR	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	269, 290
EarI	CTCTTC	2 cut(s)	269, 290
EciI	GGCGGA	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	475
Eco88I	CYCGRG	2 cut(s)	482, 512
Esp3I	CGTCTC	1 cut(s)	828
FaeI	CATG	3 cut(s)	166, 274, 511
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 1017, 1049
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	3 cut(s)	162, 270, 507
FokI	GGATG	4 cut(s)	35, 116, 182, 685
FspBI	CTAG	1 cut(s)	1061
FspI	TGCGCA	1 cut(s)	501
GlaI	GCGC	3 cut(s)	119, 146, 501
HaeIII	GGCC	5 cut(s)	105, 321, 459, 481, 533
HapII	CCGG	4 cut(s)	174, 318, 478, 834
HgaI	GACGC	2 cut(s)	136, 298
HhaI	GCGC	3 cut(s)	120, 147, 502
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	166, 274, 511
Hin6I	GCGC	3 cut(s)	118, 145, 500
HinP1I	GCGC	3 cut(s)	118, 145, 500
HincII	GTYRAC	1 cut(s)	682
HindII	GTYRAC	1 cut(s)	682
HinfI	GANTC	3 cut(s)	491, 625, 804
HpaII	CCGG	4 cut(s)	174, 318, 478, 834
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	402, 682
Hpy188I	TCNGA	2 cut(s)	69, 475
Hpy188III	TCNNGA	2 cut(s)	271, 859
Hpy8I	GTNNAC	2 cut(s)	402, 682
Hpy99I	CGWCG	2 cut(s)	329, 409
HpyAV	CCTTC	2 cut(s)	388, 1080
HpyCH4III	ACNGT	3 cut(s)	439, 529, 667
HpyCH4IV	ACGT	3 cut(s)	31, 404, 605
HpyCH4V	TGCA	3 cut(s)	4, 663, 878
HpyF10VI	GCNNNNNNNGC	9 cut(s)	99, 144, 151, 347, 356, 365, 374, 508, 539
HpyF3I	CTNAG	4 cut(s)	18, 68, 351, 1054
HpySE526I	ACGT	3 cut(s)	31, 404, 605
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	166, 274, 511
HspAI	GCGC	3 cut(s)	118, 145, 500
KspI	CCGCGG	1 cut(s)	537
Kzo9I	GATC	2 cut(s)	870, 1063
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	3 cut(s)	244, 794, 861
Lsp1109I	GCAGC	2 cut(s)	45, 59
LweI	GCATC	2 cut(s)	663, 846
MaeI	CTAG	1 cut(s)	1061
MaeII	ACGT	3 cut(s)	31, 404, 605
MalI	GATC	2 cut(s)	872, 1065
MboI	GATC	2 cut(s)	870, 1063
MboII	GAAGA	5 cut(s)	256, 259, 277, 778, 802
MflI	RGATCY	2 cut(s)	870, 1063
MhlI	GDGCHC	1 cut(s)	933
MluCI	AATT	2 cut(s)	699, 719
MlyI	GAGTC	1 cut(s)	500
MmeI	TCCRAC	1 cut(s)	266
MseI	TTAA	1 cut(s)	999
MslI	CAYNNNNRTG	1 cut(s)	386
MspA1I	CMGCKG	2 cut(s)	355, 536
MspI	CCGG	4 cut(s)	174, 318, 478, 834
Mva1269I	GAATGC	1 cut(s)	502
MvnI	CGCG	3 cut(s)	147, 347, 536
MwoI	GCNNNNNNNGC	9 cut(s)	99, 144, 151, 347, 356, 365, 374, 508, 539
NdeII	GATC	2 cut(s)	870, 1063
NlaIII	CATG	3 cut(s)	166, 274, 511
NlaIV	GGNNCC	1 cut(s)	796
NsbI	TGCGCA	1 cut(s)	501
NspI	RCATGY	2 cut(s)	166, 511
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	625, 804
PflFI	GACNNNGTC	1 cut(s)	1025
PinAI	ACCGGT	1 cut(s)	173
PleI	GAGTC	1 cut(s)	499
PpsI	GAGTC	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	796
PspPI	GGNCC	4 cut(s)	104, 457, 475, 480
PsrI	GAACNNNNNNTAC	2 cut(s)	834, 866
PsuI	RGATCY	2 cut(s)	870, 1063
PsyI	GACNNNGTC	1 cut(s)	1025
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	3 cut(s)	338, 506, 581
RsaNI	GTAC	3 cut(s)	337, 505, 580
RseI	CAYNNNNRTG	1 cut(s)	386
Rsr2I	CGGWCCG	1 cut(s)	475
RsrII	CGGWCCG	1 cut(s)	475
SacII	CCGCGG	1 cut(s)	537
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	999
Sau3AI	GATC	2 cut(s)	870, 1063
Sau96I	GGNCC	4 cut(s)	104, 457, 475, 480
SchI	GAGTC	1 cut(s)	500
SduI	GDGCHC	1 cut(s)	933
SfaNI	GCATC	2 cut(s)	663, 846
SfcI	CTRYAG	1 cut(s)	201
Sfr303I	CCGCGG	1 cut(s)	537
SgrBI	CCGCGG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	386
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	699, 719
SspMI	CTAG	1 cut(s)	1061
TaaI	ACNGT	3 cut(s)	439, 529, 667
TaiI	ACGT	3 cut(s)	34, 407, 608
TaqI	TCGA	5 cut(s)	158, 168, 324, 494, 723
TasI	AATT	2 cut(s)	699, 719
TatI	WGTACW	2 cut(s)	504, 579
TfiI	GAWTC	2 cut(s)	625, 804
Tru1I	TTAA	1 cut(s)	999
Tru9I	TTAA	1 cut(s)	999
TscAI	CASTG	3 cut(s)	22, 370, 670
TseI	GCWGC	2 cut(s)	58, 72
TspDTI	ATGAA	4 cut(s)	118, 259, 287, 370
TspRI	CASTG	3 cut(s)	22, 370, 670
Tth111I	GACNNNGTC	1 cut(s)	1025
VpaK11BI	GGWCC	1 cut(s)	475
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	2 cut(s)	166, 511
XspI	CTAG	1 cut(s)	1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.