Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Forward (+)

33595152 .. 33597634

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g33980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGAAACCGATCATATTGAAAAACGTAACGCTGTCATGAAAAAGCTCCTCCTCGTTATAAGCTGCACACTATTATCCATAGGCACATGCGGAGGTCCATTGGTAATGCGCCTGTACTTCATCCATGGAGGCAAACATATCTGGCTTTCGAGCTGGCTCCAAACCGGCGGCTGGCCAATCATCTTCATCCCCATAGCCATCGGTTATTACCACCGCCGCAAGACTGAAGGCCCATCAACCAAACTCTTCTTCATGAAACTCCCACTCTTTATGGCCTCCGCAGTCATCGGCGTCCTCACGGGCCTAGACGACTACCTTTATGCCTACGGCGTGGCCCGACTTCCTGTCTCCACGTCAGCCCTAATCATCGCTGGCCAGCTAGCCTTCACTGCCCTTTTTGCCTTTATTCTTGTAAAGCAGAAGTTCACCTCATTCTCCATAAACGCCGTCGTGTTGTTGACTATGGGCGCGGCTGTTTTGGGGTTGAACATCAGCTCTGATCGGCCAGAGGGGGAATCGAAGAAGGAGTATATTGCCGGGTTTTTTATGACGGTGGCGGCGGCTTCTTTGTATGGATTTGTGTTGCCGTTGATAGAGTTGACATACAAGAGGGCCAAGCAGACCGTTACATATGCTTTGGTTCTGGAGATTCAATCGGTTATGTGTTTGTTTGCTACTCTTTTCTGCACTCTGGGAATGCTTATCAACAACGACTTCAAGGTTATTCCAAGAGAAGCAAGAAAATTCGATCTTGGGGAAACCAGATATTATTTGGTGCTGGTATTGAGTGCTACAGTTTGGCAAGCTTTCTTTCTGGGAGCCATAGGAATCATCTTCTGCGCCTCATCTTTGCTTTCTGGAATTGTGATTGCTGTTTTACTCCCCATAACTGAGATCCTAGCAGTTATTTTTTACCATGAAAAATTCCAACCAGAAAAGGGAGTTTCTCTTGCACTCTCTGCGTGGGGATTTGTCTCGTACTTCTATGGTGAGATAAAACAAAACAAGCAAAAGGAAAAGGAAAAGGAAAAAGAAAAGGAAATGGAAATGGAAACCGAAATTGCGGAGAAAAAGAAAGACACACCAGAAACATCACAAGTTCCTCTACTGGAGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

373

Amino Acids

41.49

Weight (kDa)

8.75

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	17 - 336	4.9e-118	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AccII	CGCG	1 cut(s)	470
AciI	CCGC	9 cut(s)	90, 168, 214, 217, 279, 470, 557, 560, 1064
AclWI	GGATC	1 cut(s)	889
AcoI	YGGCCR	3 cut(s)	173, 373, 503
AcsI	RAATTY	2 cut(s)	743, 923
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	291
AfaI	GTAC	2 cut(s)	116, 980
AfiI	CCNNNNNNNGG	2 cut(s)	171, 938
AgsI	TTSAA	4 cut(s)	20, 487, 653, 718
AhdI	GACNNNNNGTC	1 cut(s)	344
AjiI	CACGTC	1 cut(s)	354
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	6 cut(s)	46, 63, 153, 379, 495, 806
AluI	AGCT	6 cut(s)	46, 63, 153, 379, 495, 806
Alw26I	GTCTC	2 cut(s)	352, 979
AlwI	GGATC	1 cut(s)	889
AoxI	GGCC	8 cut(s)	173, 229, 273, 301, 333, 373, 503, 612
ApeKI	GCWGC	1 cut(s)	63
ApoI	RAATTY	2 cut(s)	743, 923
AspLEI	GCGC	3 cut(s)	111, 470, 842
AspS9I	GGNCC	5 cut(s)	95, 230, 301, 334, 612
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	418, 1001
AsuNHI	GCTAGC	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	95
BalI	TGGCCA	2 cut(s)	175, 375
BanII	GRGCYC	1 cut(s)	1116
BbvI	GCAGC	1 cut(s)	50
BccI	CCATC	2 cut(s)	206, 241
BceAI	ACGGC	3 cut(s)	343, 431, 571
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	2 cut(s)	352, 979
BfaI	CTAG	4 cut(s)	305, 380, 899, 1117
BfmI	CTRYAG	1 cut(s)	792
BisI	GCNGC	6 cut(s)	64, 169, 217, 471, 558, 561
BlsI	GCNGC	6 cut(s)	65, 170, 218, 472, 559, 562
Bme1390I	CCNGG	1 cut(s)	538
Bme18I	GGWCC	1 cut(s)	95
BmeRI	GACNNNNNGTC	1 cut(s)	344
BmgBI	CACGTC	1 cut(s)	354
BmgT120I	GGNCC	5 cut(s)	95, 230, 301, 334, 612
BmiI	GGNNCC	3 cut(s)	158, 820, 1113
BmrFI	CCNGG	1 cut(s)	538
BmtI	GCTAGC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	538
BsaHI	GRCGYC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 938
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	1113
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	2 cut(s)	120, 186
BseLI	CCNNNNNNNGG	2 cut(s)	171, 938
BseMII	CTCAG	1 cut(s)	882
BseNI	ACTGG	1 cut(s)	1113
BseRI	GAGGAG	2 cut(s)	38, 41
BseXI	GCAGC	1 cut(s)	50
BsgI	GTGCAG	2 cut(s)	49, 670
Bsh1236I	CGCG	1 cut(s)	470
BshFI	GGCC	8 cut(s)	175, 231, 275, 303, 335, 375, 505, 614
BsiSI	CCGG	2 cut(s)	165, 537
BslI	CCNNNNNNNGG	2 cut(s)	171, 938
BsmAI	GTCTC	2 cut(s)	352, 979
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	8 cut(s)	175, 231, 275, 303, 335, 375, 505, 614
Bsp1286I	GDGCHC	1 cut(s)	1116
Bsp143I	GATC	4 cut(s)	10, 499, 748, 894
Bsp19I	CCATGG	1 cut(s)	124
BspACI	CCGC	9 cut(s)	90, 168, 214, 217, 279, 470, 557, 560, 1064
BspANI	GGCC	8 cut(s)	175, 231, 275, 303, 335, 375, 505, 614
BspCNI	CTCAG	1 cut(s)	883
BspFNI	CGCG	1 cut(s)	470
BspHI	TCATGA	2 cut(s)	36, 252
BspLI	GGNNCC	3 cut(s)	158, 820, 1113
BspOI	GCTAGC	1 cut(s)	383
BspPI	GGATC	1 cut(s)	889
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	1113
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	4 cut(s)	10, 499, 748, 894
BssNI	GRCGYC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	124
Bst4CI	ACNGT	3 cut(s)	553, 625, 796
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	959
BstC8I	GCNNGC	6 cut(s)	155, 173, 373, 377, 381, 804
BstDEI	CTNAG	1 cut(s)	891
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	2 cut(s)	120, 186
BstFNI	CGCG	1 cut(s)	470
BstHHI	GCGC	3 cut(s)	111, 470, 842
BstKTI	GATC	4 cut(s)	13, 502, 751, 897
BstMAI	GTCTC	2 cut(s)	352, 979
BstMBI	GATC	4 cut(s)	10, 499, 748, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 398, 959
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	536
BstSFI	CTRYAG	1 cut(s)	792
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	894
BstYI	RGATCY	1 cut(s)	894
BsuRI	GGCC	8 cut(s)	175, 231, 275, 303, 335, 375, 505, 614
BtgI	CCRYGG	1 cut(s)	124
BtgZI	GCGATG	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	354
BtsCI	GGATG	2 cut(s)	120, 186
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	387
Cac8I	GCNNGC	6 cut(s)	155, 173, 373, 377, 381, 804
CciI	TCATGA	2 cut(s)	36, 252
CfoI	GCGC	3 cut(s)	111, 470, 842
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	5 cut(s)	95, 230, 301, 334, 612
CseI	GACGC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	115, 979
CviAII	CATG	5 cut(s)	37, 87, 125, 253, 917
CviQI	GTAC	2 cut(s)	115, 979
DdeI	CTNAG	1 cut(s)	891
DpnI	GATC	4 cut(s)	12, 501, 750, 896
DpnII	GATC	4 cut(s)	10, 499, 748, 894
DriI	GACNNNNNGTC	1 cut(s)	344
EaeI	YGGCCR	3 cut(s)	173, 373, 503
Eam1104I	CTCTTC	1 cut(s)	251
Eam1105I	GACNNNNNGTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	251
Eco130I	CCWWGG	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	1116
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	124
EcoT38I	GRGCYC	1 cut(s)	1116
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	5 cut(s)	40, 90, 128, 256, 920
FatI	CATG	5 cut(s)	36, 86, 124, 252, 916
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	64, 169, 217, 471, 558, 561
FokI	GGATG	2 cut(s)	107, 173
FriOI	GRGCYC	1 cut(s)	1116
Fsp4HI	GCNGC	6 cut(s)	64, 169, 217, 471, 558, 561
FspBI	CTAG	4 cut(s)	305, 380, 899, 1117
GlaI	GCGC	3 cut(s)	110, 469, 841
GluI	GCNGC	6 cut(s)	64, 169, 217, 471, 558, 561
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	8 cut(s)	175, 231, 275, 303, 335, 375, 505, 614
HapII	CCGG	2 cut(s)	165, 537
HgaI	GACGC	1 cut(s)	280
HhaI	GCGC	3 cut(s)	111, 470, 842
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	40, 90, 128, 256, 920
Hin6I	GCGC	3 cut(s)	109, 468, 840
HinP1I	GCGC	3 cut(s)	109, 468, 840
HincII	GTYRAC	2 cut(s)	459, 600
HindII	GTYRAC	2 cut(s)	459, 600
HindIII	AAGCTT	1 cut(s)	804
HinfI	GANTC	3 cut(s)	515, 649, 828
HpaII	CCGG	2 cut(s)	165, 537
HphI	GGTGA	2 cut(s)	418, 1001
Hpy166II	GTNNAC	3 cut(s)	426, 459, 600
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	4 cut(s)	37, 253, 644, 858
Hpy8I	GTNNAC	3 cut(s)	426, 459, 600
Hpy99I	CGWCG	1 cut(s)	452
HpyAV	CCTTC	3 cut(s)	221, 394, 517
HpyCH4III	ACNGT	3 cut(s)	553, 625, 796
HpyCH4IV	ACGT	2 cut(s)	25, 353
HpyCH4V	TGCA	3 cut(s)	66, 687, 953
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 398, 959
HpyF3I	CTNAG	1 cut(s)	891
HpySE526I	ACGT	2 cut(s)	25, 353
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	40, 90, 128, 256, 920
HspAI	GCGC	3 cut(s)	109, 468, 840
Kzo9I	GATC	4 cut(s)	10, 499, 748, 894
LmnI	GCTCC	4 cut(s)	51, 162, 818, 1111
Lsp1109I	GCAGC	1 cut(s)	50
MaeI	CTAG	4 cut(s)	305, 380, 899, 1117
MaeII	ACGT	2 cut(s)	25, 353
MaeIII	GTNAC	2 cut(s)	26, 625
MalI	GATC	4 cut(s)	12, 501, 750, 896
MboI	GATC	4 cut(s)	10, 499, 748, 894
MboII	GAAGA	5 cut(s)	175, 238, 241, 532, 826
MflI	RGATCY	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	1116
MlsI	TGGCCA	2 cut(s)	175, 375
MluCI	AATT	4 cut(s)	743, 861, 923, 1059
MluNI	TGGCCA	2 cut(s)	175, 375
MmeI	TCCRAC	1 cut(s)	952
Mox20I	TGGCCA	2 cut(s)	175, 375
MscI	TGGCCA	2 cut(s)	175, 375
Msp20I	TGGCCA	2 cut(s)	175, 375
MspI	CCGG	2 cut(s)	165, 537
MspR9I	CCNGG	1 cut(s)	538
Mva1269I	GAATGC	1 cut(s)	702
MvnI	CGCG	1 cut(s)	470
MwoI	GCNNNNNNNGC	3 cut(s)	389, 398, 959
NciI	CCSGG	1 cut(s)	538
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	4 cut(s)	10, 499, 748, 894
NheI	GCTAGC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	40, 90, 128, 256, 920
NlaIV	GGNNCC	3 cut(s)	158, 820, 1113
NspI	RCATGY	1 cut(s)	90
PagI	TCATGA	2 cut(s)	36, 252
PctI	GAATGC	1 cut(s)	702
PfeI	GAWTC	3 cut(s)	515, 649, 828
PkrI	GCNGC	6 cut(s)	65, 170, 218, 472, 559, 562
PsiI	TTATAA	1 cut(s)	59
PspN4I	GGNNCC	3 cut(s)	158, 820, 1113
PspPI	GGNCC	5 cut(s)	95, 230, 301, 334, 612
PsuI	RGATCY	1 cut(s)	894
RsaI	GTAC	2 cut(s)	116, 980
RsaNI	GTAC	2 cut(s)	115, 979
SatI	GCNGC	6 cut(s)	64, 169, 217, 471, 558, 561
Sau3AI	GATC	4 cut(s)	10, 499, 748, 894
Sau96I	GGNCC	5 cut(s)	95, 230, 301, 334, 612
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	1 cut(s)	1116
SfcI	CTRYAG	1 cut(s)	792
SinI	GGWCC	1 cut(s)	95
Sse9I	AATT	4 cut(s)	743, 861, 923, 1059
SsiI	CCGC	9 cut(s)	90, 168, 214, 217, 279, 470, 557, 560, 1064
SspMI	CTAG	4 cut(s)	305, 380, 899, 1117
StyD4I	CCNGG	1 cut(s)	536
StyI	CCWWGG	1 cut(s)	124
TaaI	ACNGT	3 cut(s)	553, 625, 796
TaiI	ACGT	2 cut(s)	28, 356
TaqI	TCGA	3 cut(s)	149, 518, 747
TasI	AATT	4 cut(s)	743, 861, 923, 1059
TatI	WGTACW	1 cut(s)	114
TauI	GCSGC	5 cut(s)	171, 219, 473, 560, 563
TfiI	GAWTC	3 cut(s)	515, 649, 828
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	1 cut(s)	63
TspDTI	ATGAA	6 cut(s)	53, 109, 175, 241, 269, 933
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	2 cut(s)	743, 923
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	1 cut(s)	769
XspI	CTAG	4 cut(s)	305, 380, 899, 1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.