Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Reverse (-)

63854233 .. 63923340

Gene Structure 69108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG464000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCAAATGGAAACCACTGAGGATGAGCAACGTAAAGCCACCGCCCTGAAAAGGTTGCTGCTCATTCTGAGCTGCGTATTCTTATCCATAGGCAACTGCGGCGGCCCTTTGATAATGCGCCTCTACTTCATCCACGGCGGCAAGCGCGTCTGGCTTTCGAGCATGCTCGAAACCGGTGGCTGGCCCATAATCCTCGTCCCTATAGCTATAGCCTACTACCACCGCCGCAAAAACCAAGCTCCAACTGAACCACCAACCAAGCTCTTCTTCATGAAGATCCCTCTCTTCGTTGCCTCCGCCGTCATCGGCGTCCTCACCGGCCTCGACGACTACCTGTACGCCTACGGTGTCGCCCGCCTCCCCGTCTCCACCTCATCCCTCATCATAGCGGCTCAGCTGGCTTTCACGGCCTTGTTTGCCTTCATACTTGTGAAGCAGAAGTTCACGTCGTATTCCATAAACGCCATCGTGTTGCTGACGGTGGGGGCGGCGGTTCTGGGCCTGAACACGAACTCGGACCGGCCCGAGGGGGTGTCGAATGCGCAGTACATGCTCGGGTTTATGATGACGGTGGCCGCGGCGGCGTTGTATGGGTTTGTGTTGCCGTTGGTGGAGTTGATGTACAAGAAAGCCAAGCAGAACATAACGTATGCTTTGGTTTTGGAGATTCAGTTGGTCATGTGTTTGTTTGCTACCATTTTCTGCACTGTTGGGATGCTGGTCAACAATGATTTCAAGGTAATTCCAAGAGACGCAAGGAAATTCGAGCTTGGGGAGACTACCTACTATGTGGTGCTTGTAGTGAGTGCTATAATCTGGCAGGGTTTCTTCTTGGGAGCCATAGGAATCATCTTCTGTGCCTCGTCTCTACTATCCGGCATCGTAATCGCTGTTCTGCTCCCGATAACAGAGATCTTTGCTGTGATTTTCTACCACGAAAAGTTCCAAGCAGAAAAGGGCGTTTCTCTTGTGCTCTCCCTCTGGGGATTTGTCTCATACTTCTACGGCGAAATCAAACACAACAAAGAAAGCAAGCGAGTTAAGAAAAAGGAAAACAACAAGGACAGTAGCGGCCAAGACACAGAAAACCCTCAGTCAGTTCCAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

370

Amino Acids

41.0

Weight (kDa)

9.1

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	20 - 342	1.3e-120	Purine nucleobase transmembrane transport
EamA	PF00892	65 - 166	1.4e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	543
AccII	CGCG	2 cut(s)	147, 578
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	2 cut(s)	573, 1072
AcsI	RAATTY	1 cut(s)	761
AcyI	GRCGYC	1 cut(s)	309
AfaI	GTAC	3 cut(s)	338, 548, 623
AfiI	CCNNNNNNNGG	3 cut(s)	51, 180, 526
AgeI	ACCGGT	1 cut(s)	173
AgsI	TTSAA	1 cut(s)	736
AjiI	CACGTC	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	251, 283
AluBI	AGCT	6 cut(s)	72, 206, 239, 262, 397, 769
AluI	AGCT	6 cut(s)	72, 206, 239, 262, 397, 769
Alw21I	GWGCWC	1 cut(s)	975
Alw26I	GTCTC	5 cut(s)	370, 744, 770, 870, 997
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	2 cut(s)	524, 554
AoxI	GGCC	8 cut(s)	103, 182, 319, 408, 499, 521, 573, 1072
ApeKI	GCWGC	2 cut(s)	58, 72
ApoI	RAATTY	1 cut(s)	761
AsiGI	ACCGGT	1 cut(s)	173
AspLEI	GCGC	3 cut(s)	120, 147, 544
AspS9I	GGNCC	5 cut(s)	104, 183, 499, 517, 522
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	2 cut(s)	524, 554
AvaII	GGWCC	1 cut(s)	517
Bbv12I	GWGCWC	1 cut(s)	975
BbvI	GCAGC	2 cut(s)	45, 59
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	5 cut(s)	151, 284, 423, 589, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	868, 902
BcoDI	GTCTC	5 cut(s)	370, 744, 770, 870, 997
BfmI	CTRYAG	2 cut(s)	201, 207
BglI	GCCNNNNNGGC	1 cut(s)	581
BglII	AGATCT	1 cut(s)	912
BlpI	GCTNAGC	1 cut(s)	393
Bme18I	GGWCC	1 cut(s)	517
BmeT110I	CYCGRG	2 cut(s)	524, 554
BmgBI	CACGTC	1 cut(s)	447
BmgT120I	GGNCC	5 cut(s)	104, 183, 499, 517, 522
BmiI	GGNNCC	1 cut(s)	838
BmsI	GCATC	2 cut(s)	705, 888
Bpu1102I	GCTNAGC	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	3 cut(s)	133, 525, 576
BsaWI	WCCGGW	1 cut(s)	173
BsaXI	ACNNNNNCTCC	4 cut(s)	605, 635, 656, 686
Bsc4I	CCNNNNNNNGG	3 cut(s)	51, 180, 526
Bse118I	RCCGGY	3 cut(s)	173, 317, 519
BseDI	CCNNGG	3 cut(s)	133, 525, 576
BseGI	GGATG	4 cut(s)	28, 129, 374, 720
BseLI	CCNNNNNNNGG	3 cut(s)	51, 180, 526
BseMII	CTCAG	4 cut(s)	9, 59, 407, 1106
BseXI	GCAGC	2 cut(s)	45, 59
BsgI	GTGCAG	1 cut(s)	688
Bsh1236I	CGCG	2 cut(s)	147, 578
BshFI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 1074
BshTI	ACCGGT	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	975
BsiHKCI	CYCGRG	2 cut(s)	524, 554
BsiSI	CCGG	4 cut(s)	174, 318, 520, 876
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	3 cut(s)	51, 180, 526
BsmAI	GTCTC	5 cut(s)	370, 744, 770, 870, 997
BsmBI	CGTCTC	3 cut(s)	370, 744, 870
BsmFI	GGGAC	1 cut(s)	182
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 1074
BsoBI	CYCGRG	2 cut(s)	524, 554
Bsp1286I	GDGCHC	1 cut(s)	975
Bsp1407I	TGTACA	1 cut(s)	621
Bsp143I	GATC	2 cut(s)	276, 912
Bsp1720I	GCTNAGC	1 cut(s)	393
BspANI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 1074
BspCNI	CTCAG	4 cut(s)	10, 60, 406, 1105
BspFNI	CGCG	2 cut(s)	147, 578
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	838
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	269
BsrFI	RCCGGY	3 cut(s)	173, 317, 519
BsrGI	TGTACA	1 cut(s)	621
BssAI	RCCGGY	3 cut(s)	173, 317, 519
BssECI	CCNNGG	3 cut(s)	133, 525, 576
BssMI	GATC	2 cut(s)	276, 912
BssNI	GRCGYC	1 cut(s)	309
Bst4CI	ACNGT	5 cut(s)	347, 481, 571, 709, 1067
Bst6I	CTCTTC	2 cut(s)	269, 290
BstACI	GRCGYC	1 cut(s)	309
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstAUI	TGTACA	1 cut(s)	621
BstC8I	GCNNGC	6 cut(s)	143, 164, 182, 355, 399, 1034
BstDEI	CTNAG	4 cut(s)	18, 68, 393, 1092
BstDSI	CCRYGG	2 cut(s)	133, 576
BstF5I	GGATG	4 cut(s)	28, 129, 374, 720
BstFNI	CGCG	2 cut(s)	147, 578
BstHHI	GCGC	3 cut(s)	120, 147, 544
BstKTI	GATC	2 cut(s)	279, 915
BstMAI	GTCTC	5 cut(s)	370, 744, 770, 870, 997
BstMBI	GATC	2 cut(s)	276, 912
BstMWI	GCNNNNNNNGC	8 cut(s)	99, 144, 151, 398, 407, 416, 550, 581
BstNSI	RCATGY	2 cut(s)	166, 553
BstSFI	CTRYAG	2 cut(s)	201, 207
BstUI	CGCG	2 cut(s)	147, 578
BstV1I	GCAGC	2 cut(s)	45, 59
BstX2I	RGATCY	2 cut(s)	276, 912
BstYI	RGATCY	2 cut(s)	276, 912
BsuRI	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 1074
BtgI	CCRYGG	2 cut(s)	133, 576
BtrI	CACGTC	1 cut(s)	447
BtsCI	GGATG	4 cut(s)	28, 129, 374, 720
BtsIMutI	CAGTG	2 cut(s)	15, 705
Cac8I	GCNNGC	6 cut(s)	143, 164, 182, 355, 399, 1034
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	3 cut(s)	120, 147, 544
Cfr10I	RCCGGY	3 cut(s)	173, 317, 519
Cfr13I	GGNCC	5 cut(s)	104, 183, 499, 517, 522
Cfr42I	CCGCGG	1 cut(s)	579
CpoI	CGGWCCG	1 cut(s)	517
CseI	GACGC	3 cut(s)	136, 298, 761
Csp6I	GTAC	3 cut(s)	337, 547, 622
CspAI	ACCGGT	1 cut(s)	173
CspI	CGGWCCG	1 cut(s)	517
CviAII	CATG	5 cut(s)	163, 271, 550, 679, 1110
CviQI	GTAC	3 cut(s)	337, 547, 622
DdeI	CTNAG	4 cut(s)	18, 68, 393, 1092
DpnI	GATC	2 cut(s)	278, 914
DpnII	GATC	2 cut(s)	276, 912
EaeI	YGGCCR	2 cut(s)	573, 1072
Eam1104I	CTCTTC	2 cut(s)	269, 290
EarI	CTCTTC	2 cut(s)	269, 290
EciI	GGCGGA	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	517
Eco88I	CYCGRG	2 cut(s)	524, 554
Esp3I	CGTCTC	3 cut(s)	370, 744, 870
FaeI	CATG	5 cut(s)	166, 274, 553, 682, 1113
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	182
FatI	CATG	5 cut(s)	162, 270, 549, 678, 1109
FauI	CCCGC	1 cut(s)	362
FokI	GGATG	4 cut(s)	35, 116, 361, 727
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	3 cut(s)	119, 146, 543
HaeIII	GGCC	8 cut(s)	105, 184, 321, 410, 501, 523, 575, 1074
HapII	CCGG	4 cut(s)	174, 318, 520, 876
HgaI	GACGC	3 cut(s)	136, 298, 761
HhaI	GCGC	3 cut(s)	120, 147, 544
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	5 cut(s)	166, 274, 553, 682, 1113
Hin6I	GCGC	3 cut(s)	118, 145, 542
HinP1I	GCGC	3 cut(s)	118, 145, 542
HincII	GTYRAC	1 cut(s)	724
HindII	GTYRAC	1 cut(s)	724
HinfI	GANTC	2 cut(s)	667, 846
HpaII	CCGG	4 cut(s)	174, 318, 520, 876
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	444, 724
Hpy188I	TCNGA	2 cut(s)	69, 517
Hpy188III	TCNNGA	2 cut(s)	271, 901
Hpy8I	GTNNAC	2 cut(s)	444, 724
Hpy99I	CGWCG	2 cut(s)	329, 451
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	5 cut(s)	347, 481, 571, 709, 1067
HpyCH4IV	ACGT	3 cut(s)	31, 446, 647
HpyCH4V	TGCA	2 cut(s)	4, 705
HpyF10VI	GCNNNNNNNGC	8 cut(s)	99, 144, 151, 398, 407, 416, 550, 581
HpyF3I	CTNAG	4 cut(s)	18, 68, 393, 1092
HpySE526I	ACGT	3 cut(s)	31, 446, 647
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	166, 274, 553, 682, 1113
HspAI	GCGC	3 cut(s)	118, 145, 542
KspI	CCGCGG	1 cut(s)	579
Kzo9I	GATC	2 cut(s)	276, 912
LguI	GCTCTTC	1 cut(s)	269
LmnI	GCTCC	3 cut(s)	244, 836, 903
Lsp1109I	GCAGC	2 cut(s)	45, 59
LweI	GCATC	2 cut(s)	705, 888
MaeII	ACGT	3 cut(s)	31, 446, 647
MalI	GATC	2 cut(s)	278, 914
MboI	GATC	2 cut(s)	276, 912
MboII	GAAGA	6 cut(s)	256, 259, 277, 286, 820, 844
MflI	RGATCY	2 cut(s)	276, 912
MhlI	GDGCHC	1 cut(s)	975
MluCI	AATT	2 cut(s)	741, 761
MmeI	TCCRAC	1 cut(s)	266
MseI	TTAA	1 cut(s)	1041
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	2 cut(s)	397, 578
MspI	CCGG	4 cut(s)	174, 318, 520, 876
Mva1269I	GAATGC	1 cut(s)	544
MvnI	CGCG	2 cut(s)	147, 578
MwoI	GCNNNNNNNGC	8 cut(s)	99, 144, 151, 398, 407, 416, 550, 581
NdeII	GATC	2 cut(s)	276, 912
NlaIII	CATG	5 cut(s)	166, 274, 553, 682, 1113
NlaIV	GGNNCC	1 cut(s)	838
NsbI	TGCGCA	1 cut(s)	543
NspI	RCATGY	2 cut(s)	166, 553
PaeI	GCATGC	1 cut(s)	166
PagI	TCATGA	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	269
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	2 cut(s)	667, 846
PinAI	ACCGGT	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	838
PspPI	GGNCC	5 cut(s)	104, 183, 499, 517, 522
PsrI	GAACNNNNNNTAC	2 cut(s)	876, 908
PsuI	RGATCY	2 cut(s)	276, 912
PvuII	CAGCTG	1 cut(s)	397
RsaI	GTAC	3 cut(s)	338, 548, 623
RsaNI	GTAC	3 cut(s)	337, 547, 622
RseI	CAYNNNNRTG	1 cut(s)	428
Rsr2I	CGGWCCG	1 cut(s)	517
RsrII	CGGWCCG	1 cut(s)	517
SacII	CCGCGG	1 cut(s)	579
SapI	GCTCTTC	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	1041
Sau3AI	GATC	2 cut(s)	276, 912
Sau96I	GGNCC	5 cut(s)	104, 183, 499, 517, 522
SduI	GDGCHC	1 cut(s)	975
SfaNI	GCATC	2 cut(s)	705, 888
SfcI	CTRYAG	2 cut(s)	201, 207
Sfr303I	CCGCGG	1 cut(s)	579
SgrBI	CCGCGG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	517
SmiMI	CAYNNNNRTG	1 cut(s)	428
SphI	GCATGC	1 cut(s)	166
Sse9I	AATT	2 cut(s)	741, 761
TaaI	ACNGT	5 cut(s)	347, 481, 571, 709, 1067
TaiI	ACGT	3 cut(s)	34, 449, 650
TaqI	TCGA	5 cut(s)	158, 168, 324, 536, 765
TasI	AATT	2 cut(s)	741, 761
TatI	WGTACW	2 cut(s)	546, 621
TfiI	GAWTC	2 cut(s)	667, 846
Tru1I	TTAA	1 cut(s)	1041
Tru9I	TTAA	1 cut(s)	1041
TscAI	CASTG	2 cut(s)	22, 712
TseI	GCWGC	2 cut(s)	58, 72
TspDTI	ATGAA	4 cut(s)	118, 259, 287, 412
TspRI	CASTG	2 cut(s)	22, 712
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	1 cut(s)	761
XceI	RCATGY	2 cut(s)	166, 553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.