Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Forward (+)

46703183 .. 46707399

Gene Structure 4217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1379500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCAAATGGAAACCGATCATGTTGAAAAACGTAACGCTGCCATGAAAAACGTCCTCCTCATTATAAGCTGCGCACTTCTATCCATAGGCACATGTGGAGGTCCATTGGTAATGCGCCTCTACTTCATCCATGGAGGCAAGCGTGTCTGGCTTTCGAGCTGGCTCGAAACCGGCGGCTGGCCAATCATCTTCATCCCCATAGCCATGGCTTATTGCTACCGCCGCAAGACTGAAGGCCCATCAACAAAACTCTTCTTCATGAAGCTCCCACTCTTTACAGCCTCCGCTGTCATCGGCGTCCTCACCGGTCTGGACGACTACCTTTACGCCTATGGCGTTGCTCGACTTCCGATCTCCACGTCAGCCCTAATCCTCGCTAGCCATTTAGCCTTCACTGCCCTTTTTGCCTTTATTCTTGTGAAGCAGAAGTTCACCTCATTCTCCATAAACGCCATCGTGTTGTTGACTATTGGCGCGGTTGTTTTGGGGTTGAACACCAGCTCTGATCGTCCAGAGGGGGAATCGAATAAGGAGTATATTGCCGGATTTTTTATGACGGTGGCGGCGGCTGCTTTGTATGGATTTGTGTTGCCGTTGATAGAGTTGACATACAAGAAGGCCAAGCAGACCATTACATATGCTTTGGTTCTAGAGGTTCAATTGGTTATGTGTTTGTTTGCTACTCTTTTTTGCACTGTGGGAATGCTTATCGACAACGACTTCAAGGTTATTCCAAAAGAAGCAAGAAAATTCGATCTTGGGGAAACCAGATACTATGTGGTGCTGGTATTTAGTGCTATATTATGGCAAGGTTTTTTTCTGGGAGCCATAGGAATCATCTTCTGCGCCTCATCTTTGCTTTCTGGAATTGTGATTGCTTCTTTAATCCCCGTAACTCAGATCCTAGCAGTTATTTTTTACCATGAAAAATTCCAAGCAGAAAAGGGAGTCTCTCTTGCACTCTCTCTCTGGGGATTTATCTTTTACTTCTATGGTGAGAGAAAACACAACAAGGAAAAGGAAAAGAAAATCGAAATCGAAATTGCAGAGAAAAAGAAAGACACACCAGAAACAATACAAGTTCCTCAACAGGGAACCCTAGCTACTCAGCAGTCACAAACCCTAGTTGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

379

Amino Acids

41.95

Weight (kDa)

8.94

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	18 - 338	5.2e-119	Purine nucleobase transmembrane transport

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	65
Acc16I	TGCGCA	1 cut(s)	73
AccII	CGCG	1 cut(s)	476
AciI	CCGC	7 cut(s)	174, 220, 223, 285, 476, 563, 566
AclWI	GGATC	1 cut(s)	895
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	2 cut(s)	749, 929
AcuI	CTGAAG	1 cut(s)	252
AcyI	GRCGYC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	177, 1091
AflIII	ACRYGT	1 cut(s)	92
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	4 cut(s)	26, 493, 659, 724
AjiI	CACGTC	1 cut(s)	360
AluBI	AGCT	5 cut(s)	69, 159, 265, 501, 1103
AluI	AGCT	5 cut(s)	69, 159, 265, 501, 1103
Alw26I	GTCTC	1 cut(s)	955
AlwI	GGATC	1 cut(s)	895
AoxI	GGCC	3 cut(s)	179, 235, 618
ApeKI	GCWGC	3 cut(s)	38, 69, 569
ApoI	RAATTY	2 cut(s)	749, 929
AsiGI	ACCGGT	1 cut(s)	305
AspLEI	GCGC	4 cut(s)	74, 117, 476, 848
AspS9I	GGNCC	2 cut(s)	101, 236
AsuHPI	GGTGA	3 cut(s)	295, 424, 1007
AsuNHI	GCTAGC	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	101
BalI	TGGCCA	1 cut(s)	181
BbvI	GCAGC	3 cut(s)	25, 56, 556
BccI	CCATC	2 cut(s)	247, 461
BceAI	ACGGC	1 cut(s)	577
BcoDI	GTCTC	1 cut(s)	955
BfaI	CTAG	5 cut(s)	378, 650, 905, 1100, 1124
BisI	GCNGC	7 cut(s)	39, 70, 175, 223, 564, 567, 570
BlsI	GCNGC	7 cut(s)	40, 71, 176, 224, 565, 568, 571
Bme18I	GGWCC	1 cut(s)	101
BmgBI	CACGTC	1 cut(s)	360
BmgT120I	GGNCC	2 cut(s)	101, 236
BmiI	GGNNCC	2 cut(s)	826, 1096
BmtI	GCTAGC	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	130, 204
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 1091
Bse118I	RCCGGY	2 cut(s)	170, 305
BseDI	CCNNGG	2 cut(s)	130, 204
BseGI	GGATG	2 cut(s)	126, 192
BseLI	CCNNNNNNNGG	2 cut(s)	177, 1091
BseMII	CTCAG	2 cut(s)	911, 1121
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	25, 56, 556
Bsh1236I	CGCG	1 cut(s)	476
BshFI	GGCC	3 cut(s)	181, 237, 620
BshTI	ACCGGT	1 cut(s)	305
BsiSI	CCGG	3 cut(s)	171, 306, 543
BslI	CCNNNNNNNGG	2 cut(s)	177, 1091
BsmAI	GTCTC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	3 cut(s)	181, 237, 620
Bsp143I	GATC	5 cut(s)	16, 351, 505, 754, 900
Bsp19I	CCATGG	2 cut(s)	130, 204
BspACI	CCGC	7 cut(s)	174, 220, 223, 285, 476, 563, 566
BspANI	GGCC	3 cut(s)	181, 237, 620
BspCNI	CTCAG	2 cut(s)	910, 1120
BspFNI	CGCG	1 cut(s)	476
BspHI	TCATGA	1 cut(s)	258
BspLI	GGNNCC	2 cut(s)	826, 1096
BspOI	GCTAGC	1 cut(s)	381
BspPI	GGATC	1 cut(s)	895
BsrFI	RCCGGY	2 cut(s)	170, 305
BssAI	RCCGGY	2 cut(s)	170, 305
BssECI	CCNNGG	2 cut(s)	130, 204
BssMI	GATC	5 cut(s)	16, 351, 505, 754, 900
BssNI	GRCGYC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	130, 204
Bst4CI	ACNGT	2 cut(s)	559, 697
Bst6I	CTCTTC	1 cut(s)	257
BstACI	GRCGYC	1 cut(s)	297
BstC8I	GCNNGC	4 cut(s)	140, 161, 179, 379
BstDEI	CTNAG	2 cut(s)	897, 1107
BstDSI	CCRYGG	2 cut(s)	130, 204
BstF5I	GGATG	2 cut(s)	126, 192
BstFNI	CGCG	1 cut(s)	476
BstHHI	GCGC	4 cut(s)	74, 117, 476, 848
BstKTI	GATC	5 cut(s)	19, 354, 508, 757, 903
BstMAI	GTCTC	1 cut(s)	955
BstMBI	GATC	5 cut(s)	16, 351, 505, 754, 900
BstMWI	GCNNNNNNNGC	5 cut(s)	148, 222, 395, 404, 569
BstNSI	RCATGY	1 cut(s)	96
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	3 cut(s)	25, 56, 556
BstX2I	RGATCY	1 cut(s)	900
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	900
BsuRI	GGCC	3 cut(s)	181, 237, 620
BtgI	CCRYGG	2 cut(s)	130, 204
BtrI	CACGTC	1 cut(s)	360
BtsCI	GGATG	2 cut(s)	126, 192
BtsI	GCAGTG	1 cut(s)	393
BtsIMutI	CAGTG	2 cut(s)	393, 693
Cac8I	GCNNGC	4 cut(s)	140, 161, 179, 379
CciI	TCATGA	1 cut(s)	258
CfoI	GCGC	4 cut(s)	74, 117, 476, 848
Cfr10I	RCCGGY	2 cut(s)	170, 305
Cfr13I	GGNCC	2 cut(s)	101, 236
CseI	GACGC	1 cut(s)	286
CspAI	ACCGGT	1 cut(s)	305
CviAII	CATG	7 cut(s)	20, 43, 93, 131, 205, 259, 923
DdeI	CTNAG	2 cut(s)	897, 1107
DpnI	GATC	5 cut(s)	18, 353, 507, 756, 902
DpnII	GATC	5 cut(s)	16, 351, 505, 754, 900
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
Eco130I	CCWWGG	2 cut(s)	130, 204
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	252
EcoT14I	CCWWGG	2 cut(s)	130, 204
ErhI	CCWWGG	2 cut(s)	130, 204
FaeI	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
FatI	CATG	7 cut(s)	19, 42, 92, 130, 204, 258, 922
FauNDI	CATATG	1 cut(s)	637
Fnu4HI	GCNGC	7 cut(s)	39, 70, 175, 223, 564, 567, 570
FokI	GGATG	2 cut(s)	113, 179
Fsp4HI	GCNGC	7 cut(s)	39, 70, 175, 223, 564, 567, 570
FspBI	CTAG	5 cut(s)	378, 650, 905, 1100, 1124
FspI	TGCGCA	1 cut(s)	73
GlaI	GCGC	4 cut(s)	73, 116, 475, 847
GluI	GCNGC	7 cut(s)	39, 70, 175, 223, 564, 567, 570
HaeIII	GGCC	3 cut(s)	181, 237, 620
HapII	CCGG	3 cut(s)	171, 306, 543
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	4 cut(s)	74, 117, 476, 848
Hin1I	GRCGYC	1 cut(s)	297
Hin1II	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
Hin6I	GCGC	4 cut(s)	72, 115, 474, 846
HinP1I	GCGC	4 cut(s)	72, 115, 474, 846
HincII	GTYRAC	2 cut(s)	465, 606
HindII	GTYRAC	2 cut(s)	465, 606
HinfI	GANTC	3 cut(s)	521, 834, 948
HpaII	CCGG	3 cut(s)	171, 306, 543
HphI	GGTGA	3 cut(s)	295, 424, 1007
Hpy166II	GTNNAC	3 cut(s)	432, 465, 606
Hpy188I	TCNGA	3 cut(s)	351, 505, 900
Hpy188III	TCNNGA	5 cut(s)	259, 311, 512, 650, 864
Hpy8I	GTNNAC	3 cut(s)	432, 465, 606
HpyAV	CCTTC	3 cut(s)	227, 400, 610
HpyCH4III	ACNGT	2 cut(s)	559, 697
HpyCH4IV	ACGT	3 cut(s)	31, 51, 359
HpyCH4V	TGCA	4 cut(s)	4, 693, 959, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	148, 222, 395, 404, 569
HpyF3I	CTNAG	2 cut(s)	897, 1107
HpySE526I	ACGT	3 cut(s)	31, 51, 359
Hsp92I	GRCGYC	1 cut(s)	297
Hsp92II	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
HspAI	GCGC	4 cut(s)	72, 115, 474, 846
Kzo9I	GATC	5 cut(s)	16, 351, 505, 754, 900
LmnI	GCTCC	2 cut(s)	270, 824
Lsp1109I	GCAGC	3 cut(s)	25, 56, 556
MaeI	CTAG	5 cut(s)	378, 650, 905, 1100, 1124
MaeII	ACGT	3 cut(s)	31, 51, 359
MaeIII	GTNAC	3 cut(s)	32, 892, 1113
MalI	GATC	5 cut(s)	18, 353, 507, 756, 902
MboI	GATC	5 cut(s)	16, 351, 505, 754, 900
MboII	GAAGA	4 cut(s)	181, 244, 247, 832
MfeI	CAATTG	1 cut(s)	659
MflI	RGATCY	1 cut(s)	900
MlsI	TGGCCA	1 cut(s)	181
MluCI	AATT	5 cut(s)	659, 749, 867, 929, 1041
MluNI	TGGCCA	1 cut(s)	181
MlyI	GAGTC	1 cut(s)	957
MmeI	TCCRAC	1 cut(s)	1108
Mox20I	TGGCCA	1 cut(s)	181
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	2 cut(s)	884, 1135
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	181
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	3 cut(s)	171, 306, 543
MunI	CAATTG	1 cut(s)	659
Mva1269I	GAATGC	1 cut(s)	708
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	5 cut(s)	148, 222, 395, 404, 569
NcoI	CCATGG	2 cut(s)	130, 204
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	5 cut(s)	16, 351, 505, 754, 900
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	7 cut(s)	23, 46, 96, 134, 208, 262, 926
NlaIV	GGNNCC	2 cut(s)	826, 1096
NmuCI	GTSAC	1 cut(s)	1113
NsbI	TGCGCA	1 cut(s)	73
NspI	RCATGY	1 cut(s)	96
PagI	TCATGA	1 cut(s)	258
PciI	ACATGT	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	333
PctI	GAATGC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	521, 834
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	7 cut(s)	40, 71, 176, 224, 565, 568, 571
PleI	GAGTC	1 cut(s)	956
PpsI	GAGTC	1 cut(s)	956
PscI	ACATGT	1 cut(s)	92
PsiI	TTATAA	1 cut(s)	65
PspN4I	GGNNCC	2 cut(s)	826, 1096
PspPI	GGNCC	2 cut(s)	101, 236
PsrI	GAACNNNNNNTAC	2 cut(s)	1087, 1119
PsuI	RGATCY	1 cut(s)	900
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	884, 1135
SatI	GCNGC	7 cut(s)	39, 70, 175, 223, 564, 567, 570
Sau3AI	GATC	5 cut(s)	16, 351, 505, 754, 900
Sau96I	GGNCC	2 cut(s)	101, 236
SchI	GAGTC	1 cut(s)	957
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	203
Sse9I	AATT	5 cut(s)	659, 749, 867, 929, 1041
SsiI	CCGC	7 cut(s)	174, 220, 223, 285, 476, 563, 566
SspMI	CTAG	5 cut(s)	378, 650, 905, 1100, 1124
StyI	CCWWGG	2 cut(s)	130, 204
TaaI	ACNGT	2 cut(s)	559, 697
TaiI	ACGT	3 cut(s)	34, 54, 362
TaqI	TCGA	8 cut(s)	155, 165, 343, 524, 711, 753, 1032, 1038
TasI	AATT	5 cut(s)	659, 749, 867, 929, 1041
TauI	GCSGC	4 cut(s)	177, 225, 566, 569
TfiI	GAWTC	2 cut(s)	521, 834
Tru1I	TTAA	2 cut(s)	884, 1135
Tru9I	TTAA	2 cut(s)	884, 1135
TscAI	CASTG	2 cut(s)	400, 700
TseFI	GTSAC	1 cut(s)	1113
TseI	GCWGC	3 cut(s)	38, 69, 569
Tsp45I	GTSAC	1 cut(s)	1113
TspDTI	ATGAA	6 cut(s)	59, 115, 181, 247, 275, 939
TspRI	CASTG	2 cut(s)	400, 700
VpaK11BI	GGWCC	1 cut(s)	101
XapI	RAATTY	2 cut(s)	749, 929
XbaI	TCTAGA	1 cut(s)	649
XceI	RCATGY	1 cut(s)	96
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XspI	CTAG	5 cut(s)	378, 650, 905, 1100, 1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.