Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0005715

Physical Location & Seq

Genomic Coordinates Reverse (-)

58457755 .. 58459475

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G038390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAAACCACTGAGGATGAGCAGCGTAAAGCCGCCGCCCTGAAAAGGTTGCTGCTCATTCTGAGCTGCGTATTCTTATCCGTAGGCACCTGCGGCGGCCCTTTGATAATGCGCCTCTACTTCATCCACGGCGGCAAGCGCGTCTGGCTTACGAGCATGCTCGAAACCGGTGGCTGGCCCATAATCCTCGTCCCTATAGCCATAGCCTACTACCACCGCCGCAAAAACCAAGCTCCAACTGAACCACCAACCAAGCTCTTCTTCATGAAGCTCCCTCTCTTCGTTGCCTCCGCCGTCATCGGCGTCCTCACCGGCCTCGACGACTACCTGTACGCCTACGGTGTCGCCCGCATCCCCGTCTCCACCACAGCCCTCATCACAGCGGCTCATCTGGCTTTCACGGCCTTGTTTGCCTTCATACTTGTGAAGCAGAAGTTCACGTCGTATTCCATAAACGCCATCGTGTTGCTGACGGTGGGGGCGGCGGTTCTGGGCCTGAACACGAACTCGGACCGGCCCGAGGGGGAGTCGAATGCGCAGTACATGCTCGGGTTTATGATGACGGTGTCCGCGGCGGCGTTGTATGGGTTTGTGTTGCCGTTGGTGGAGTTGATGTACAAGAAAGCCAAGCAGAACATCACGTATGCTTTGGTTTTGGAGATTCAGTTGGTTATGTGTTTGTTTGCTACCATTTTCTGCACTGTTGGGATGCTGGTCAACAATGATTTCAAGGTAATTCCAAGAGACGCAAGGAAATTCGAGCTTGGGGAGACTACCTACTATGTGGTGCTTGTAGTGAGTGCTATAATCTGGCAGGGTTTCTTCTTGGGAGCCATAGGAATCATCTTCTGTGCCTCGTCTCTACTATCCGGCATCGTAATCGCTGTTCTGCTCCCGATAACAGAGATCTTTGCTGTGATTTTCTACCACGAAAAGTTCCAAGCAGAAAAGGGCGTTTCTCTTGTGCTCTCCCTCTGGGGATTTGTCTCATACTTCTACGGCGAAATCAAACACAACAAAGAAAGCAAGCGAGTTAAGAAAAAGGAAAACAATAGGGACAGTAGTGGCCAAGACACAGAAAACCCTCAGTCAGTTCCAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005337 GO:0005345 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006863 GO:0008150 GO:0009914 GO:0010184 GO:0010817 GO:0015205 GO:0015211 GO:0015851 GO:0015858 GO:0015860 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0071705 GO:0071944 GO:0072530 GO:1901264 GO:1901505 GO:1901642 GO:1904823

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PUNUT

Protein Analysis

368

Amino Acids

40.76

Weight (kDa)

9.01

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PUNUT	PF16913	18 - 340	4.4e-118	Purine nucleobase transmembrane transport
EamA	PF00892	63 - 164	7.5e-08	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005715)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28220 AT1G28230
fragaria_vesca	FvH4_5g36040 FvH4_5g36060
malus_domestica	MD00G1135600.v1.1 MD15G1379500.v1.1
prunus_persica	Prupe.1G525600_v2.0.a1 Prupe.1G525800_v2.0.a1
pyrus_communis	pycom08g16430 pycom15g33980 pycom15g34010
rosa_chinensis	RchiOBHm_Chr7g0237771 RchiOBHm_Chr7g0237851
rosa_laevigata	RLG00000000962 RLG00000000968
rosa_multiflora	Rmu_ssc0000067.1_g000004 Rmu_ssc0000067.1_g000031
rosa_roxburghii	Rroxscaffold_3G00223710 Rroxscaffold_3G00223760
rosa_rugosa	Rorug07G0308600
rosa_samantha	Rh7AG464000 Rh7BG434100 Rh7CG481000 Rh7CG481500 Rh7DG449900 Rh7DG450200
rosa_wichuraiana	Rw7G038390 Rw7G038400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc16I	TGCGCA	1 cut(s)	537
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	86
AccII	CGCG	2 cut(s)	141, 572
AcoI	YGGCCR	1 cut(s)	1066
AcsI	RAATTY	1 cut(s)	755
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	3 cut(s)	332, 542, 617
AfiI	CCNNNNNNNGG	3 cut(s)	45, 174, 520
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	730
AjiI	CACGTC	1 cut(s)	441
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	5 cut(s)	66, 233, 256, 271, 763
AluI	AGCT	5 cut(s)	66, 233, 256, 271, 763
Alw21I	GWGCWC	1 cut(s)	969
Alw26I	GTCTC	5 cut(s)	364, 738, 764, 864, 991
Ama87I	CYCGRG	2 cut(s)	518, 548
AoxI	GGCC	7 cut(s)	97, 176, 313, 402, 493, 515, 1066
ApeKI	GCWGC	3 cut(s)	22, 52, 66
ApoI	RAATTY	1 cut(s)	755
AsiGI	ACCGGT	1 cut(s)	167
AspLEI	GCGC	3 cut(s)	114, 141, 538
AspS9I	GGNCC	5 cut(s)	98, 177, 493, 511, 516
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	2 cut(s)	518, 548
AvaII	GGWCC	1 cut(s)	511
BalI	TGGCCA	1 cut(s)	1068
BanI	GGYRCC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	969
BbvI	GCAGC	3 cut(s)	34, 39, 53
BccI	CCATC	1 cut(s)	467
BceAI	ACGGC	5 cut(s)	145, 278, 417, 583, 1015
BcgI	CGANNNNNNTGC	2 cut(s)	862, 896
BcoDI	GTCTC	5 cut(s)	364, 738, 764, 864, 991
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	98
BglII	AGATCT	1 cut(s)	906
Bme18I	GGWCC	1 cut(s)	511
BmeT110I	CYCGRG	2 cut(s)	518, 548
BmgBI	CACGTC	1 cut(s)	441
BmgT120I	GGNCC	5 cut(s)	98, 177, 493, 511, 516
BmiI	GGNNCC	2 cut(s)	88, 832
BmsI	GCATC	3 cut(s)	360, 699, 882
BsaAI	YACGTR	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	3 cut(s)	127, 519, 570
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	4 cut(s)	599, 629, 650, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 174, 520
Bse118I	RCCGGY	3 cut(s)	167, 311, 513
BseDI	CCNNGG	3 cut(s)	127, 519, 570
BseGI	GGATG	4 cut(s)	22, 123, 351, 714
BseLI	CCNNNNNNNGG	3 cut(s)	45, 174, 520
BseMII	CTCAG	2 cut(s)	53, 1100
BseXI	GCAGC	3 cut(s)	34, 39, 53
BsgI	GTGCAG	1 cut(s)	682
Bsh1236I	CGCG	2 cut(s)	141, 572
BshFI	GGCC	7 cut(s)	99, 178, 315, 404, 495, 517, 1068
BshNI	GGYRCC	1 cut(s)	86
BshTI	ACCGGT	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	969
BsiHKCI	CYCGRG	2 cut(s)	518, 548
BsiSI	CCGG	4 cut(s)	168, 312, 514, 870
BslFI	GGGAC	2 cut(s)	176, 1070
BslI	CCNNNNNNNGG	3 cut(s)	45, 174, 520
BsmAI	GTCTC	5 cut(s)	364, 738, 764, 864, 991
BsmBI	CGTCTC	3 cut(s)	364, 738, 864
BsmFI	GGGAC	2 cut(s)	176, 1070
BsmI	GAATGC	1 cut(s)	538
BsnI	GGCC	7 cut(s)	99, 178, 315, 404, 495, 517, 1068
BsoBI	CYCGRG	2 cut(s)	518, 548
Bsp1286I	GDGCHC	1 cut(s)	969
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	906
BspANI	GGCC	7 cut(s)	99, 178, 315, 404, 495, 517, 1068
BspCNI	CTCAG	3 cut(s)	4, 54, 1099
BspFNI	CGCG	2 cut(s)	141, 572
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	2 cut(s)	88, 832
BspMI	ACCTGC	1 cut(s)	98
BspQI	GCTCTTC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	86
BsrFI	RCCGGY	3 cut(s)	167, 311, 513
BsrGI	TGTACA	1 cut(s)	615
BssAI	RCCGGY	3 cut(s)	167, 311, 513
BssECI	CCNNGG	3 cut(s)	127, 519, 570
BssMI	GATC	1 cut(s)	906
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	5 cut(s)	341, 475, 565, 703, 1061
Bst6I	CTCTTC	2 cut(s)	263, 284
BstACI	GRCGYC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	615
BstBAI	YACGTR	1 cut(s)	642
BstC8I	GCNNGC	5 cut(s)	137, 158, 176, 349, 1028
BstDEI	CTNAG	3 cut(s)	12, 62, 1086
BstDSI	CCRYGG	2 cut(s)	127, 570
BstF5I	GGATG	4 cut(s)	22, 123, 351, 714
BstFNI	CGCG	2 cut(s)	141, 572
BstHHI	GCGC	3 cut(s)	114, 141, 538
BstKTI	GATC	1 cut(s)	909
BstMAI	GTCTC	5 cut(s)	364, 738, 764, 864, 991
BstMBI	GATC	1 cut(s)	906
BstMWI	GCNNNNNNNGC	7 cut(s)	93, 138, 145, 392, 401, 410, 544
BstNSI	RCATGY	2 cut(s)	160, 547
BstSFI	CTRYAG	1 cut(s)	195
BstUI	CGCG	2 cut(s)	141, 572
BstV1I	GCAGC	3 cut(s)	34, 39, 53
BstX2I	RGATCY	1 cut(s)	906
BstYI	RGATCY	1 cut(s)	906
BsuRI	GGCC	7 cut(s)	99, 178, 315, 404, 495, 517, 1068
BtgI	CCRYGG	2 cut(s)	127, 570
BtrI	CACGTC	1 cut(s)	441
BtsCI	GGATG	4 cut(s)	22, 123, 351, 714
BtsIMutI	CAGTG	2 cut(s)	9, 699
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	5 cut(s)	137, 158, 176, 349, 1028
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	3 cut(s)	114, 141, 538
Cfr10I	RCCGGY	3 cut(s)	167, 311, 513
Cfr13I	GGNCC	5 cut(s)	98, 177, 493, 511, 516
Cfr42I	CCGCGG	1 cut(s)	573
CpoI	CGGWCCG	1 cut(s)	511
CseI	GACGC	3 cut(s)	130, 292, 755
Csp6I	GTAC	3 cut(s)	331, 541, 616
CspAI	ACCGGT	1 cut(s)	167
CspI	CGGWCCG	1 cut(s)	511
CviAII	CATG	4 cut(s)	157, 265, 544, 1104
CviQI	GTAC	3 cut(s)	331, 541, 616
DdeI	CTNAG	3 cut(s)	12, 62, 1086
DpnI	GATC	1 cut(s)	908
DpnII	GATC	1 cut(s)	906
EaeI	YGGCCR	1 cut(s)	1066
Eam1104I	CTCTTC	2 cut(s)	263, 284
EarI	CTCTTC	2 cut(s)	263, 284
EciI	GGCGGA	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	511
Eco88I	CYCGRG	2 cut(s)	518, 548
Esp3I	CGTCTC	3 cut(s)	364, 738, 864
FaeI	CATG	4 cut(s)	160, 268, 547, 1107
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	2 cut(s)	176, 1070
FatI	CATG	4 cut(s)	156, 264, 543, 1103
FauI	CCCGC	1 cut(s)	356
FokI	GGATG	4 cut(s)	29, 110, 338, 721
FspI	TGCGCA	1 cut(s)	537
GlaI	GCGC	3 cut(s)	113, 140, 537
HaeIII	GGCC	7 cut(s)	99, 178, 315, 404, 495, 517, 1068
HapII	CCGG	4 cut(s)	168, 312, 514, 870
HgaI	GACGC	3 cut(s)	130, 292, 755
HhaI	GCGC	3 cut(s)	114, 141, 538
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	160, 268, 547, 1107
Hin6I	GCGC	3 cut(s)	112, 139, 536
HinP1I	GCGC	3 cut(s)	112, 139, 536
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HinfI	GANTC	3 cut(s)	527, 661, 840
HpaII	CCGG	4 cut(s)	168, 312, 514, 870
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	438, 718
Hpy188I	TCNGA	2 cut(s)	63, 511
Hpy188III	TCNNGA	2 cut(s)	265, 895
Hpy8I	GTNNAC	2 cut(s)	438, 718
Hpy99I	CGWCG	2 cut(s)	323, 445
HpyAV	CCTTC	1 cut(s)	424
HpyCH4III	ACNGT	5 cut(s)	341, 475, 565, 703, 1061
HpyCH4IV	ACGT	2 cut(s)	440, 641
HpyCH4V	TGCA	1 cut(s)	699
HpyF10VI	GCNNNNNNNGC	7 cut(s)	93, 138, 145, 392, 401, 410, 544
HpyF3I	CTNAG	3 cut(s)	12, 62, 1086
HpySE526I	ACGT	2 cut(s)	440, 641
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	4 cut(s)	160, 268, 547, 1107
HspAI	GCGC	3 cut(s)	112, 139, 536
KspI	CCGCGG	1 cut(s)	573
Kzo9I	GATC	1 cut(s)	906
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	4 cut(s)	238, 276, 830, 897
Lsp1109I	GCAGC	3 cut(s)	34, 39, 53
LweI	GCATC	3 cut(s)	360, 699, 882
MaeII	ACGT	2 cut(s)	440, 641
MalI	GATC	1 cut(s)	908
MboI	GATC	1 cut(s)	906
MboII	GAAGA	5 cut(s)	250, 253, 271, 814, 838
MflI	RGATCY	1 cut(s)	906
MhlI	GDGCHC	1 cut(s)	969
MlsI	TGGCCA	1 cut(s)	1068
MluCI	AATT	2 cut(s)	735, 755
MluNI	TGGCCA	1 cut(s)	1068
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	260
Mox20I	TGGCCA	1 cut(s)	1068
MscI	TGGCCA	1 cut(s)	1068
MseI	TTAA	1 cut(s)	1035
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	1068
MspA1I	CMGCKG	2 cut(s)	383, 572
MspI	CCGG	4 cut(s)	168, 312, 514, 870
Mva1269I	GAATGC	1 cut(s)	538
MvnI	CGCG	2 cut(s)	141, 572
MwoI	GCNNNNNNNGC	7 cut(s)	93, 138, 145, 392, 401, 410, 544
NdeII	GATC	1 cut(s)	906
NlaIII	CATG	4 cut(s)	160, 268, 547, 1107
NlaIV	GGNNCC	2 cut(s)	88, 832
NsbI	TGCGCA	1 cut(s)	537
NspI	RCATGY	2 cut(s)	160, 547
PaeI	GCATGC	1 cut(s)	160
PagI	TCATGA	1 cut(s)	264
PaqCI	CACCTGC	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	263
PctI	GAATGC	1 cut(s)	538
PfeI	GAWTC	2 cut(s)	661, 840
PflFI	GACNNNGTC	1 cut(s)	565
PinAI	ACCGGT	1 cut(s)	167
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	642
PspN4I	GGNNCC	2 cut(s)	88, 832
PspPI	GGNCC	5 cut(s)	98, 177, 493, 511, 516
PsrI	GAACNNNNNNTAC	2 cut(s)	870, 902
PsuI	RGATCY	1 cut(s)	906
PsyI	GACNNNGTC	1 cut(s)	565
RsaI	GTAC	3 cut(s)	332, 542, 617
RsaNI	GTAC	3 cut(s)	331, 541, 616
RseI	CAYNNNNRTG	1 cut(s)	422
Rsr2I	CGGWCCG	1 cut(s)	511
RsrII	CGGWCCG	1 cut(s)	511
SacII	CCGCGG	1 cut(s)	573
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	1 cut(s)	1035
Sau3AI	GATC	1 cut(s)	906
Sau96I	GGNCC	5 cut(s)	98, 177, 493, 511, 516
SchI	GAGTC	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	969
SfaNI	GCATC	3 cut(s)	360, 699, 882
SfcI	CTRYAG	1 cut(s)	195
Sfr303I	CCGCGG	1 cut(s)	573
SgrBI	CCGCGG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	422
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	2 cut(s)	735, 755
TaaI	ACNGT	5 cut(s)	341, 475, 565, 703, 1061
TaiI	ACGT	2 cut(s)	443, 644
TaqI	TCGA	4 cut(s)	162, 318, 530, 759
TasI	AATT	2 cut(s)	735, 755
TatI	WGTACW	2 cut(s)	540, 615
TfiI	GAWTC	2 cut(s)	661, 840
Tru1I	TTAA	1 cut(s)	1035
Tru9I	TTAA	1 cut(s)	1035
TscAI	CASTG	2 cut(s)	16, 706
TseI	GCWGC	3 cut(s)	22, 52, 66
TspDTI	ATGAA	4 cut(s)	112, 253, 281, 406
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	2 cut(s)	16, 706
Tth111I	GACNNNGTC	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	1 cut(s)	755
XceI	RCATGY	2 cut(s)	160, 547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.