Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011708

Physical Location & Seq

Genomic Coordinates Forward (+)

9979478 .. 9987737

Gene Structure 8260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5118 bp

ATGGAGATGGGTTCTGACGGTGAAGATCAGAAGATCAGGAGCGTCGTTGGTGATGCTAATCTTAATAATAAGAAGAAGAAGATTGATAATAATTCCTCCTCTAAGGATGGTCGTGTCAAGCCTAAACGTCAGATGAAAACTCCGTTTCAGCTTGAAACCTTGGAGAAAGTTTATTCAGAGGAGAAGTATCCGTCGGAGGCGACGAGGGCTGAGTTATCTGAGAAATTGGATTTGTCAGATCGACAATTACAGATGTGGTTTTGTCATAGACGGTTAAAGGACAAGAAGGATGGTCAGTCTAATAAACCGGTGAAATCATCGGTTGCTGCGGTTCAATCGGCTTCGGTTAACGAGTTACCGGCTGCTGCTGGATCGGTACCTGAGCAAGATTCCAGATCTGATTCGGGTTCTGAGTCTGGTTGCAGTCCTTATTCCAACTCTAGGAGGAATTTTGCTAGTGGTAGTAGTAGTTCTCGAGCTGAATTGGATGAATATGAGACAATGGGAAAGCCGAGTTATGAGTCGCGGTTGTCGACAATGGTGCATAGAGCTATTGTCTGTATTGAGGCTCAGTTAGGTGAGCCATTGAGAGATGATGGACCTATTCTTGGCATGGAGTTTGATCCTTTGCCTCCTGGTGCGTTTGGAACACCTATAGCGATGCAGAAACACCTACTTCATCCCTATGAGAGCGATCTGTATGAGCGACATGATCCCCGACCTCGAAGATCTCATGCTGCTGCCCGTTCTTTCCATGAGCAACAATCTCTGGATGATCCGTCTTCTTTTACACCTAATATGTATGAACGATACTCTGAAAATCATGCACGTGGTATGGACTATGAAGTTGCACGTTCTAGAATTTCATCATTTATGCACGCGAATGGACCTGTACCAAGGTCCTATGTTACCCCTGGACATGCGTCTCGTAACTGTTCGACATCTCAACAAGACATGCCAAGCCCCATTGAATCAGCGCATCATGGTGATAGATTCCTGCTGGAGAAGGACTCATCAGTCCTTGGTACAGAAGATCCATATTTGTTACCTGATGGAGTGCGTAAGAGTAGTGATGTGCATAGAAAGGGAAAGATTAACGATGGTAGACTTGGAAGAGGGAGTGAAACCCGAGAGAATCATGGACCAAAAGATCTTGAGAAGCTAGAAATTCAGAGGAAAAAGAATGAAGAACGCATGAGAAAAGAGATGGAAAGGAACGAGCGTGAGAGGCGTAAGGAAGAAGAGAGGTTGATGCGTGAAAGAATAAAAGAAGAGGAAAGGTTACAGCGTGAGCAGCGTCGTGAAGTAGAAAGAAGAGAAAAATTCTTACAGAGAGAAAATGAAAGGGCTGAGAAAAAGAAGCAAAAAGACGAGATTCGTCGAGAGAAAGACGCTATTAGACGCAAGCTTGCCATTGAGAAGGCAACTGCACGTAGAATTGCCAAGGAGTCTATGGATCTTATTGAAGATGAGCAGCTAGAACTAATGGAATTGGCTGCTATTAGCAAAGGATTACCCTCAGTATTACAGCTTGATCACGACACATTGCAGAATCTTGAGGTGTATAGAGATTCTCTGAGCACATTTCCACCAAAGTCTTTGCAACTAAAAATGCCGTTTGCCATTTCTCCATGGAAAGATTCTGATGAAACTGTTGGAAACCTTCTAATGGTTTGGAGATTCCTGATATCATTTTCTGATGTTCTTGACCTATGGCCTTTTACACTGGATGAGTTTATTCAGGCTTTTCATGACTATGACTCAAGGTTGCTGGGGGAGATACATGTTACTCTTCTGAGATCAATAATACGAGATGTCGAAGATGTTGCTAGAACACCCTTTAGTGGAATTGGAAATAACCAATATACTACAGCCAATCCTGAGGGTGGACATCCGCAAATAGTTGAAGGGGCTTATGCATGGGGTTTTGACATTCGTAGTTGGAAAAAGCATTTGAACCCACTAACATGGCCTGAAATACTGCGACAATTAGCGCTCTCTGCTGGATTTGGACCTAAGCTGAAGAAAAAACATTCCCGATTGACCAATACTGGTGATAAGGATGAGGCTAAAGGTTGTGAAGATGTCATTTCTACTATCCGAAATGGTACAGCAGCTGAAAGTGCTTTTGCATCGATGCGGGAGAAAGGGTTGCTCGCTCCTCGCAAGTCGAGGCACCGGTTGACACCTGGAACCGTCAAATTTGCAGCCTTTCATGTTCTATCTCTTGAAGGAAGCAAGGGACTGACAGTATTAGAACTTGCTGACAAGATTCAGAAATCTGGACTTCGGGACTTGACCACAAGCAAGACACCAGAGGCTTCTATTTCTGTTGCATTGACAAGAGATGTGAAACTCTTTGAAAGAATAGCTCCTTCGACTTATTGTGTACGAGCTCCTTATGTGAAGGATCCTAAGGATGGAGAGGCAATACTCGCAGATGCCAGGAAGAAGATACGGGCTTTTGAAAATGGATTTACAGGTCCAGAAGATGTGAATGATCTTGAAAGGGATGAAGACTTCGAAATTGATATTGATGAGGATCCCGAGGTTGATGATTTAGCTACACTGGCAAGTGCATCAAAAAGTGCCGTTCTTGGAGAAGCGAATGTTTTGTCAGGAAAGGGGGTAGATACAATGTTCTGTGATGTTAAAGCAGATGTAAAGAGTGAGCTTGAGAAGGAGTTTTCATCTCCTCCTCCAAGCACTATGAAGAGCATTGTTCCACAACATAGTGAGCGGCATAAAAATACAGTGGTTGGCGGCGTGGATGCCGTAATTGATGAAAGCAACCAGGGCCAATCATGGATTCAAGGTCTTACGGAAGGGGATTACTGTCATCTAAGTGTTGAAGAGCGCCTTAATGCCCTTGTTGCTTTAGTCGGCATTGCCAATGAAGGAAACTCCATCAGAACAGGTCTTGAGGATCGTATGGAAGCAGCAAATGCTCTTAAAAAGCAAATGTGGGCTGAAGCACAGTTAGATAACAGCTGTATGAGAGATGTACTTAAGCTTGATCTTCAAAACTTAGCAAGCAGCAAAACTGAATCAACGATAGGCCTACCAATCATTCAAAGCTCTACTCGTGAGAGGGATAGTTTTGATAGAGACCCTTCTCAACTTCTAGATGAAACAAAGCCCCTGGAAGATCTTTCGAACGATCTTCATAAATCATCTGCTGAGAGAGCACTTATTAATCAGGATGCCAATATAAGTCAAGAAAATTATGCTTCAAAGAGATCACGCTCCCAATTAAAGTCATATATAGGCCACAAAGCAGAAGAGGTGTATCCATACCGATCTTTGCCGCTTGGACAAGATCGGCGCCACAATCGTTACTGGCATTTTGCTGTATCAGTGTCTAAGAGTGATCCTTGTTCGAGGCTCTTATTTGTTGAGCTACATGATGGCAAGTGGCTCCTCATTGATTCAGAAGAGGCTTTTGATATTCTGGTTGCATCATTGGATATGCGTGGGATCAGAGAGTCTCATTTACGCATAATGCTGCAGAAGATCGAGGGATCATTCAAAGAGAATGCTTGTAAAGATATAAAGCTAGCTAGAAACCCTTTCTTGACGGAAAAGAGTGTTGTGAATCATTCTCCTACAGATTCTGTGAGCCCATCGTCCAGTGCTATATCAGGGTCAAACTCTGATTCAATGGAAACTTCAACTTCAATTAGAGTTGATTTAGGTAGAAATGACACCGAGAACAAGAATTTATCAAAACGGTTCCATGATTTCCAGAGATGGATGTGGACCGAGACGTACAGTTCACTACCTTCTTGTGCTAGAAAATATGGGAAGAAGAGATCTGAACTGTTAGCAACATGTGACGCGTGTGTTGCTTCCTATTTGTCTGAGTATACCTTCTGCTCTTCTTGTCACCAGAGATTGGACGTGGTTGATAGTTCAGAGATATTAGATTCAGGTTTGGCTGTGTCTCCTCTTCCTTTTGGAGTCAGGTTGCTCAAACCACTACTTGTTTTTCTCGAGGCATCTGTTCCAGATGAAGCTCTTGAATCATTTTGGACAGAGGACCAAAGAAAAAAATGGGGGTTTAGGTTGAATACTTCATCATCACCTGGAGAACTTTTGCAGGTGTTGACTTCCTTAGAGAGTGCAATCAAGAAAGAATCTTTGTCATCCAATTTTATGTCGGCAAAGGAGCTTTTGGGAGCTGCTAACGCTGAGGCTGATGATCAGGGATCAGTGGACGTTCTTCCATGGATACCAAAGACAGTATCAGCGGTTGCTTTGAGACTTTCAGAACTTGATGCATCCATTATTTATGTGAAGCCAGAGAAACCTGAGGTCATCCCTGAAGATGAGAACGAGCAGATTAGCCTTTTCCCTAGAGATTCACCTTTCAAAGGCAAAGGACCCAGAGAGCAAGAAGATCAAGACGAGGTTGCTCCAAACCCGGGTAACAGAAATAAGAAACGTGCACGAGTAAGCTTGGGATCTGGATCAAACAGAAAGGTGAAGAGGAAGAAAGCGCAAAGCGGTCTTAACAAATTTGTCGTTGGTAGGAGAAATGTTGCAGTCAATAGTAACTTAATGGCCGTTGAGTTGAACCACCAAGTCCCTGGAAAAGGAAAGAGGACGGTTAGAAAAAGACCAGAGAGGATCGATGAGGATAATTCCCACCTAGTCAATAGAATGGCTAATATTGTTAGGCCTAAAAGCGAAGAAGTTGAAGAAGATGAGGAAGAAGAAGAGCAAACATTCAGAGACATTAATGAAGACTGGGCAGCAGGTGAAACTCCTAGAGAGATGGAGGAGGACTGGGCCAATGAAACACCAAACAGAATGATGACGCCGATGCAAGTGGATGATGAAAGTGACAACAGTGTAGGAGTTGAATCAGAGGATGAAGATGGTGGTGGTCAGTTTGTGGATTATAGTCAGAGAAACAAGTGGGGGTTAGATTGGAATAGTAACCTAAATGTGGCAATAGAGGAAGACGAGGAAGAAGAAGTTGTGGGGGTTGGGCGGGTCGAAGGAGAAGATGACGCAGAAATGAGTGAGAGCTCTGAAGATGATGATGTACCTGCTAATAATGCAGCAAACAATTACGACAGAGAATCAGAAGGTTACAGCAGCAGCGATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010228 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

1705

Amino Acids

191.99

Weight (kDa)

5.32

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	40 - 96	2.3e-17	Homeodomain
DDT	PF02791	550 - 605	1.1e-20	DDT domain
HARE-HTH	PF05066	731 - 798	4.3e-19	HB1, ASXL, restriction endonuclease HTH domain
WHIM1	PF15612	933 - 975	1.7e-08	WSTF, HB1, Itc1p, MBD9 motif 1
WSD	PF15613	1099 - 1172	2.4e-20	Williams-Beuren syndrome DDT (WSD), D-TOX E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0011708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28420
fragaria_vesca	FvH4_3g08620
malus_domestica	MD05G1310200.v1.1 MD10G1289100.v1.1
prunus_persica	Prupe.4G052600_v2.0.a1
pyrus_communis	pycom05g28660 pycom10g24170
rosa_chinensis	RchiOBHm_Chr5g0009221
rosa_laevigata	RLG00000031635 RLG00000031641
rosa_multiflora	Rmu_sc0006233.1_g000030
rosa_roxburghii	Rroxscaffold_1G00066840 Rroxscaffold_1G00067540
rosa_rugosa	Rorug04G0441600
rosa_samantha	Rh5AG071400 Rh5BG067900 Rh5CG080200 Rh5DG067900
rosa_wichuraiana	Rw5G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	4090, 4748
AasI	GACNNNNNNGTC	1 cut(s)	1016
Acc36I	ACCTGC	3 cut(s)	4090, 4748, 5062
Acc65I	GGTACC	1 cut(s)	376
AccB1I	GGYRCC	3 cut(s)	376, 2175, 3324
AccB7I	CCANNNNNTGG	1 cut(s)	3895
AccBSI	CCGCTC	1 cut(s)	2740
AccI	GTMKAC	3 cut(s)	533, 1105, 3866
AccII	CGCG	3 cut(s)	526, 881, 3839
AcoI	YGGCCR	1 cut(s)	4563
AcsI	RAATTY	7 cut(s)	448, 861, 1167, 1322, 2201, 3718, 4517
AcuI	CTGAAG	4 cut(s)	2042, 2991, 4344, 5058
AcvI	CACGTG	1 cut(s)	830
AcyI	GRCGYC	2 cut(s)	3325, 4820
AfaI	GTAC	8 cut(s)	378, 894, 1027, 2110, 2391, 3006, 3770, 5052
AfeI	AGCGCT	1 cut(s)	1995
AflII	CTTAAG	1 cut(s)	3008
AflIII	ACRYGT	3 cut(s)	1783, 3830, 3837
AgeI	ACCGGT	2 cut(s)	307, 2178
AjiI	CACGTC	1 cut(s)	3901
AjnI	CCWGG	8 cut(s)	634, 913, 2188, 2444, 2793, 3141, 4084, 4588
AjuI	GAANNNNNNNTTGG	2 cut(s)	2793, 2825
Alw21I	GWGCWC	5 cut(s)	1583, 2398, 3190, 4450, 5036
Alw26I	GTCTC	8 cut(s)	491, 930, 3102, 3492, 3758, 3948, 4255, 4728
Alw44I	GTGCAC	1 cut(s)	4446
AlwNI	CAGNNNCTG	2 cut(s)	2117, 3614
Ama87I	CYCGRG	5 cut(s)	474, 1128, 2546, 3992, 4423
Aor51HI	AGCGCT	1 cut(s)	1995
AoxI	GGCC	8 cut(s)	1715, 1970, 2797, 3058, 3268, 4563, 4679, 4791
ApaLI	GTGCAC	1 cut(s)	4446
ApoI	RAATTY	7 cut(s)	448, 861, 1167, 1322, 2201, 3718, 4517
ArsI	GACNNNNNNTTYG	2 cut(s)	2600, 2632
AseI	ATTAAT	2 cut(s)	3195, 4740
AsiGI	ACCGGT	2 cut(s)	307, 2178
Asp718I	GGTACC	1 cut(s)	376
AspLEI	GCGC	5 cut(s)	979, 1996, 2859, 3327, 4501
AsuC2I	CCSGG	2 cut(s)	4424, 4425
AsuII	TTCGAA	2 cut(s)	2523, 3155
AsuNHI	GCTAGC	1 cut(s)	3556
AvaI	CYCGRG	5 cut(s)	474, 1128, 2546, 3992, 4423
AvaII	GGWCC	9 cut(s)	599, 887, 900, 1142, 2012, 2483, 3759, 4039, 4382
AxyI	CCTNAGG	3 cut(s)	1881, 2415, 4311
BaeGI	GKGCMC	1 cut(s)	4450
BamHI	GGATCC	2 cut(s)	2410, 2542
BanI	GGYRCC	3 cut(s)	376, 2175, 3324
BanII	GRGCYC	3 cut(s)	2398, 3623, 5036
BauI	CACGAG	2 cut(s)	3084, 4449
BbrPI	CACGTG	1 cut(s)	830
BbsI	GAAGAC	4 cut(s)	774, 2523, 4752, 4971
Bbv12I	GWGCWC	5 cut(s)	1583, 2398, 3190, 4450, 5036
BbvCI	CCTCAGC	1 cut(s)	4191
BceAI	ACGGC	4 cut(s)	1600, 2576, 2759, 4550
BcgI	CGANNNNNNTGC	4 cut(s)	523, 557, 1808, 1842
BciT130I	CCWGG	8 cut(s)	636, 915, 2190, 2446, 2795, 3143, 4086, 4590
BciVI	GTATCC	3 cut(s)	198, 3300, 4224
BclI	TGATCA	2 cut(s)	1534, 4201
BcnI	CCSGG	2 cut(s)	4424, 4425
BcoDI	GTCTC	8 cut(s)	491, 930, 3102, 3492, 3758, 3948, 4255, 4728
BfmI	CTRYAG	4 cut(s)	654, 1869, 3506, 3606
BfoI	RGCGCY	3 cut(s)	1997, 2860, 3328
BfrI	CTTAAG	1 cut(s)	3008
BfuAI	ACCTGC	3 cut(s)	4090, 4748, 5062
BfuI	GTATCC	3 cut(s)	198, 3300, 4224
BglII	AGATCT	5 cut(s)	395, 728, 1150, 3148, 3812
Bme18I	GGWCC	9 cut(s)	599, 887, 900, 1142, 2012, 2483, 3759, 4039, 4382
BmeT110I	CYCGRG	5 cut(s)	474, 1128, 2546, 3992, 4423
BmgBI	CACGTC	1 cut(s)	3901
BmiI	GGNNCC	9 cut(s)	378, 2177, 2194, 2412, 2544, 3326, 3419, 3734, 4384
BmrI	ACTGGG	2 cut(s)	4759, 4798
BmtI	GCTAGC	1 cut(s)	3560
BmuI	ACTGGG	2 cut(s)	4759, 4798
BoxI	GACNNNNGTC	1 cut(s)	922
BpiI	GAAGAC	4 cut(s)	774, 2523, 4752, 4971
BplI	GAGNNNNNCTC	2 cut(s)	995, 1027
BpmI	CTGGAG	2 cut(s)	1022, 4107
Bpu10I	CCTNAGC	3 cut(s)	381, 2016, 4191
Bpu14I	TTCGAA	2 cut(s)	2523, 3155
BpuEI	CTTGAG	5 cut(s)	1175, 1577, 1747, 2696, 2942
BpuMI	CCSGG	2 cut(s)	4424, 4425
Bsa29I	ATCGAT	2 cut(s)	2135, 4632
BsaAI	YACGTR	2 cut(s)	830, 1433
BsaBI	GATNNNNATC	3 cut(s)	57, 2541, 4468
BsaHI	GRCGYC	2 cut(s)	3325, 4820
BsaI	GGTCTC	1 cut(s)	3102
BsaWI	WCCGGW	2 cut(s)	307, 2178
BsaXI	ACNNNNNCTCC	2 cut(s)	2135, 2165
Bse118I	RCCGGY	3 cut(s)	307, 358, 2178
Bse1I	ACTGG	7 cut(s)	1731, 2056, 2574, 3344, 3630, 4754, 4793
Bse21I	CCTNAGG	3 cut(s)	1881, 2415, 4311
Bse3DI	GCAATG	2 cut(s)	1544, 2886
Bse8I	GATNNNNATC	3 cut(s)	57, 2541, 4468
BseBI	CCWGG	8 cut(s)	636, 915, 2190, 2446, 2795, 3143, 4086, 4590
BseCI	ATCGAT	2 cut(s)	2135, 4632
BseJI	GATNNNNATC	3 cut(s)	57, 2541, 4468
BseMI	GCAATG	2 cut(s)	1544, 2886
BseNI	ACTGG	7 cut(s)	1731, 2056, 2574, 3344, 3630, 4754, 4793
BseRI	GAGGAG	8 cut(s)	88, 194, 2151, 2685, 2688, 3410, 3936, 4796
BseSI	GKGCMC	1 cut(s)	4450
BseYI	CCCAGC	1 cut(s)	1771
BsgI	GTGCAG	1 cut(s)	1413
Bsh1236I	CGCG	3 cut(s)	526, 881, 3839
BshFI	GGCC	8 cut(s)	1717, 1972, 2799, 3060, 3270, 4565, 4681, 4793
BshNI	GGYRCC	3 cut(s)	376, 2175, 3324
BshTI	ACCGGT	2 cut(s)	307, 2178
BshVI	ATCGAT	2 cut(s)	2135, 4632
BsiHKAI	GWGCWC	5 cut(s)	1583, 2398, 3190, 4450, 5036
BsiHKCI	CYCGRG	5 cut(s)	474, 1128, 2546, 3992, 4423
BsiSI	CCGG	4 cut(s)	308, 359, 2179, 4424
BslFI	GGGAC	3 cut(s)	2256, 2306, 4571
BsmAI	GTCTC	8 cut(s)	491, 930, 3102, 3492, 3758, 3948, 4255, 4728
BsmBI	CGTCTC	2 cut(s)	930, 3758
BsmFI	GGGAC	3 cut(s)	2256, 2306, 4571
BsmI	GAATGC	1 cut(s)	3541
BsnI	GGCC	8 cut(s)	1717, 1972, 2799, 3060, 3270, 4565, 4681, 4793
Bso31I	GGTCTC	1 cut(s)	3102
BsoBI	CYCGRG	5 cut(s)	474, 1128, 2546, 3992, 4423
Bsp119I	TTCGAA	2 cut(s)	2523, 3155
Bsp1286I	GDGCHC	6 cut(s)	1583, 2398, 3190, 3623, 4450, 5036
Bsp19I	CCATGG	2 cut(s)	1631, 4226
BspANI	GGCC	8 cut(s)	1717, 1972, 2799, 3060, 3270, 4565, 4681, 4793
BspDI	ATCGAT	2 cut(s)	2135, 4632
BspFNI	CGCG	3 cut(s)	526, 881, 3839
BspHI	TCATGA	2 cut(s)	1750, 5114
BspLI	GGNNCC	9 cut(s)	378, 2177, 2194, 2412, 2544, 3326, 3419, 3734, 4384
BspMAI	CTGCAG	1 cut(s)	3510
BspMI	ACCTGC	3 cut(s)	4090, 4748, 5062
BspOI	GCTAGC	1 cut(s)	3560
BspQI	GCTCTTC	4 cut(s)	2708, 2847, 3883, 4713
BspT104I	TTCGAA	2 cut(s)	2523, 3155
BspT107I	GGYRCC	3 cut(s)	376, 2175, 3324
BspTI	CTTAAG	1 cut(s)	3008
BspTNI	GGTCTC	1 cut(s)	3102
BsrBI	CCGCTC	1 cut(s)	2740
BsrDI	GCAATG	2 cut(s)	1544, 2886
BsrFI	RCCGGY	3 cut(s)	307, 358, 2178
BsrI	ACTGG	7 cut(s)	1731, 2056, 2574, 3344, 3630, 4754, 4793
BssAI	RCCGGY	3 cut(s)	307, 358, 2178
BssNAI	GTATAC	1 cut(s)	3867
BssNI	GRCGYC	2 cut(s)	3325, 4820
BssSI	CACGAG	2 cut(s)	3084, 4449
BssT1I	CCWWGG	6 cut(s)	159, 896, 1021, 1443, 1631, 4226
Bst1107I	GTATAC	1 cut(s)	3867
Bst2BI	CACGAG	2 cut(s)	3084, 4449
Bst2UI	CCWGG	8 cut(s)	636, 915, 2190, 2446, 2795, 3143, 4086, 4590
BstACI	GRCGYC	2 cut(s)	3325, 4820
BstAFI	CTTAAG	1 cut(s)	3008
BstAPI	GCANNNNNTGC	1 cut(s)	2945
BstBAI	YACGTR	2 cut(s)	830, 1433
BstBI	TTCGAA	2 cut(s)	2523, 3155
BstC8I	GCNNGC	6 cut(s)	879, 1406, 1410, 2157, 3034, 3558
BstDSI	CCRYGG	2 cut(s)	1631, 4226
BstENI	CCTNNNNNAGG	2 cut(s)	4371, 4593
BstFNI	CGCG	3 cut(s)	526, 881, 3839
BstH2I	RGCGCY	3 cut(s)	1997, 2860, 3328
BstHHI	GCGC	5 cut(s)	979, 1996, 2859, 3327, 4501
BstMAI	GTCTC	8 cut(s)	491, 930, 3102, 3492, 3758, 3948, 4255, 4728
BstNI	CCWGG	8 cut(s)	636, 915, 2190, 2446, 2795, 3143, 4086, 4590
BstNSI	RCATGY	4 cut(s)	923, 958, 1787, 3834
BstPAI	GACNNNNGTC	1 cut(s)	922
BstSFI	CTRYAG	4 cut(s)	654, 1869, 3506, 3606
BstSLI	GKGCMC	1 cut(s)	4450
BstUI	CGCG	3 cut(s)	526, 881, 3839
BstV2I	GAAGAC	4 cut(s)	774, 2523, 4752, 4971
BstXI	CCANNNNNNTGG	2 cut(s)	1968, 4589
BstZ17I	GTATAC	1 cut(s)	3867
Bsu15I	ATCGAT	2 cut(s)	2135, 4632
Bsu36I	CCTNAGG	3 cut(s)	1881, 2415, 4311
BsuI	GTATCC	3 cut(s)	198, 3300, 4224
BsuRI	GGCC	8 cut(s)	1717, 1972, 2799, 3060, 3270, 4565, 4681, 4793
BsuTUI	ATCGAT	2 cut(s)	2135, 4632
BtgI	CCRYGG	2 cut(s)	1631, 4226
BtgZI	GCGATG	1 cut(s)	674
BtrI	CACGTC	1 cut(s)	3901
BtsIMutI	CAGTG	7 cut(s)	1724, 2567, 2760, 3363, 3637, 4218, 4858
BveI	ACCTGC	3 cut(s)	4090, 4748, 5062
Cac8I	GCNNGC	6 cut(s)	879, 1406, 1410, 2157, 3034, 3558
CaiI	CAGNNNCTG	2 cut(s)	2117, 3614
CciI	TCATGA	2 cut(s)	1750, 5114
CfoI	GCGC	5 cut(s)	979, 1996, 2859, 3327, 4501
Cfr10I	RCCGGY	3 cut(s)	307, 358, 2178
Cfr9I	CCCGGG	1 cut(s)	4423
ClaI	ATCGAT	2 cut(s)	2135, 4632
CseI	GACGC	8 cut(s)	31, 912, 1286, 1400, 1410, 3845, 4828, 5024
Csp6I	GTAC	8 cut(s)	377, 893, 1026, 2109, 2390, 3005, 3769, 5051
CspAI	ACCGGT	2 cut(s)	307, 2178
CviQI	GTAC	8 cut(s)	377, 893, 1026, 2109, 2390, 3005, 3769, 5051
DinI	GGCGCC	1 cut(s)	3326
DrdI	GACNNNNNNGTC	1 cut(s)	1016
DseDI	GACNNNNNNGTC	1 cut(s)	1016
EaeI	YGGCCR	1 cut(s)	4563
Ecl136II	GAGCTC	2 cut(s)	2396, 5034
Eco130I	CCWWGG	6 cut(s)	159, 896, 1021, 1443, 1631, 4226
Eco147I	AGGCCT	2 cut(s)	3060, 4681
Eco24I	GRGCYC	3 cut(s)	2398, 3623, 5036
Eco31I	GGTCTC	1 cut(s)	3102
Eco32I	GATATC	1 cut(s)	1689
Eco47I	GGWCC	9 cut(s)	599, 887, 900, 1142, 2012, 2483, 3759, 4039, 4382
Eco47III	AGCGCT	1 cut(s)	1995
Eco53kI	GAGCTC	2 cut(s)	2396, 5034
Eco57I	CTGAAG	4 cut(s)	2042, 2991, 4344, 5058
Eco72I	CACGTG	1 cut(s)	830
Eco81I	CCTNAGG	3 cut(s)	1881, 2415, 4311
Eco88I	CYCGRG	5 cut(s)	474, 1128, 2546, 3992, 4423
EcoICRI	GAGCTC	2 cut(s)	2396, 5034
EcoNI	CCTNNNNNAGG	2 cut(s)	4371, 4593
EcoO109I	RGGNCCY	2 cut(s)	900, 4382
EcoRII	CCWGG	8 cut(s)	634, 913, 2188, 2444, 2793, 3141, 4084, 4588
EcoRV	GATATC	1 cut(s)	1689
EcoT14I	CCWWGG	6 cut(s)	159, 896, 1021, 1443, 1631, 4226
EcoT22I	ATGCAT	2 cut(s)	1921, 4282
EcoT38I	GRGCYC	3 cut(s)	2398, 3623, 5036
EgeI	GGCGCC	1 cut(s)	3326
EheI	GGCGCC	1 cut(s)	3326
ErhI	CCWWGG	6 cut(s)	159, 896, 1021, 1443, 1631, 4226
Esp3I	CGTCTC	2 cut(s)	930, 3758
FalI	AAGNNNNNCTT	2 cut(s)	2844, 2876
FaqI	GGGAC	3 cut(s)	2256, 2306, 4571
FauI	CCCGC	2 cut(s)	2133, 4989
FbaI	TGATCA	2 cut(s)	1534, 4201
FblI	GTMKAC	3 cut(s)	533, 1105, 3866
FriOI	GRGCYC	3 cut(s)	2398, 3623, 5036
GlaI	GCGC	5 cut(s)	978, 1995, 2858, 3326, 4500
GsaI	CCCAGC	1 cut(s)	1775
GsuI	CTGGAG	2 cut(s)	1022, 4107
HaeII	RGCGCY	3 cut(s)	1997, 2860, 3328
HaeIII	GGCC	8 cut(s)	1717, 1972, 2799, 3060, 3270, 4565, 4681, 4793
HapII	CCGG	4 cut(s)	308, 359, 2179, 4424
HgaI	GACGC	8 cut(s)	31, 912, 1286, 1400, 1410, 3845, 4828, 5024
HhaI	GCGC	5 cut(s)	979, 1996, 2859, 3327, 4501
Hin1I	GRCGYC	2 cut(s)	3325, 4820
Hin6I	GCGC	5 cut(s)	977, 1994, 2857, 3325, 4499
HinP1I	GCGC	5 cut(s)	977, 1994, 2857, 3325, 4499
HincII	GTYRAC	4 cut(s)	349, 534, 2184, 4107
HindII	GTYRAC	4 cut(s)	349, 534, 2184, 4107
HindIII	AAGCTT	3 cut(s)	1406, 3011, 4456
HpaI	GTTAAC	1 cut(s)	349
HpaII	CCGG	4 cut(s)	308, 359, 2179, 4424
Hpy99I	CGWCG	5 cut(s)	47, 196, 205, 1302, 1383
HpyCH4IV	ACGT	8 cut(s)	127, 829, 853, 1432, 3767, 3900, 4218, 4444
HpySE526I	ACGT	8 cut(s)	127, 829, 853, 1432, 3767, 3900, 4218, 4444
Hsp92I	GRCGYC	2 cut(s)	3325, 4820
HspAI	GCGC	5 cut(s)	977, 1994, 2857, 3325, 4499
KasI	GGCGCC	1 cut(s)	3324
KpnI	GGTACC	1 cut(s)	380
Ksp22I	TGATCA	2 cut(s)	1534, 4201
KspAI	GTTAAC	1 cut(s)	349
LguI	GCTCTTC	4 cut(s)	2708, 2847, 3883, 4713
LmnI	GCTCC	9 cut(s)	39, 2164, 2377, 2401, 3251, 3423, 4168, 4178, 4420
MaeII	ACGT	8 cut(s)	127, 829, 853, 1432, 3767, 3900, 4218, 4444
MbiI	CCGCTC	1 cut(s)	2740
MhlI	GDGCHC	6 cut(s)	1583, 2398, 3190, 3623, 4450, 5036
MluI	ACGCGT	1 cut(s)	3837
Mly113I	GGCGCC	1 cut(s)	3325
MlyI	GAGTC	7 cut(s)	422, 530, 1004, 1457, 1754, 3494, 3969
MmeI	TCCRAC	4 cut(s)	174, 459, 1636, 1922
Mph1103I	ATGCAT	2 cut(s)	1921, 4282
MslI	CAYNNNNRTG	7 cut(s)	684, 828, 882, 984, 1755, 1966, 2844
MspA1I	CMGCKG	3 cut(s)	2117, 2991, 4250
MspCI	CTTAAG	1 cut(s)	3008
MspI	CCGG	4 cut(s)	308, 359, 2179, 4424
Mva1269I	GAATGC	1 cut(s)	3541
MvaI	CCWGG	8 cut(s)	636, 915, 2190, 2446, 2795, 3143, 4086, 4590
MvnI	CGCG	3 cut(s)	526, 881, 3839
NarI	GGCGCC	1 cut(s)	3325
NciI	CCSGG	2 cut(s)	4424, 4425
NcoI	CCATGG	2 cut(s)	1631, 4226
NheI	GCTAGC	1 cut(s)	3556
NlaIV	GGNNCC	9 cut(s)	378, 2177, 2194, 2412, 2544, 3326, 3419, 3734, 4384
NmeAIII	GCCGAG	1 cut(s)	537
NmuCI	GTSAC	3 cut(s)	3833, 3884, 4844
NsiI	ATGCAT	2 cut(s)	1921, 4282
NspI	RCATGY	4 cut(s)	923, 958, 1787, 3834
NspV	TTCGAA	2 cut(s)	2523, 3155
PaeR7I	CTCGAG	2 cut(s)	474, 3992
PagI	TCATGA	2 cut(s)	1750, 5114
PaqCI	CACCTGC	2 cut(s)	4090, 4748
PceI	AGGCCT	2 cut(s)	3060, 4681
PciI	ACATGT	2 cut(s)	1783, 3830
PciSI	GCTCTTC	4 cut(s)	2708, 2847, 3883, 4713
PcsI	WCGNNNNNNNCGW	2 cut(s)	200, 530
PctI	GAATGC	1 cut(s)	3541
PflMI	CCANNNNNTGG	1 cut(s)	3895
PinAI	ACCGGT	2 cut(s)	307, 2178
PleI	GAGTC	7 cut(s)	421, 529, 1004, 1456, 1754, 3493, 3968
PluTI	GGCGCC	1 cut(s)	3328
PmaCI	CACGTG	1 cut(s)	830
PmlI	CACGTG	1 cut(s)	830
PpsI	GAGTC	7 cut(s)	421, 529, 1004, 1456, 1754, 3493, 3968
Ppu21I	YACGTR	2 cut(s)	830, 1433
PpuMI	RGGWCCY	2 cut(s)	900, 4382
PscI	ACATGT	2 cut(s)	1783, 3830
PshAI	GACNNNNGTC	1 cut(s)	922
PshBI	ATTAAT	2 cut(s)	3195, 4740
Psp124BI	GAGCTC	2 cut(s)	2398, 5036
Psp5II	RGGWCCY	2 cut(s)	900, 4382
Psp6I	CCWGG	8 cut(s)	634, 913, 2188, 2444, 2793, 3141, 4084, 4588
PspCI	CACGTG	1 cut(s)	830
PspFI	CCCAGC	1 cut(s)	1771
PspGI	CCWGG	8 cut(s)	634, 913, 2188, 2444, 2793, 3141, 4084, 4588
PspN4I	GGNNCC	9 cut(s)	378, 2177, 2194, 2412, 2544, 3326, 3419, 3734, 4384
PspPPI	RGGWCCY	2 cut(s)	900, 4382
PsrI	GAACNNNNNNTAC	2 cut(s)	454, 486
PstI	CTGCAG	1 cut(s)	3510
PstNI	CAGNNNCTG	2 cut(s)	2117, 3614
PvuII	CAGCTG	2 cut(s)	2117, 2991
RsaI	GTAC	8 cut(s)	378, 894, 1027, 2110, 2391, 3006, 3770, 5052
RsaNI	GTAC	8 cut(s)	377, 893, 1026, 2109, 2390, 3005, 3769, 5051
RseI	CAYNNNNRTG	7 cut(s)	684, 828, 882, 984, 1755, 1966, 2844
SacI	GAGCTC	2 cut(s)	2398, 5036
SalI	GTCGAC	1 cut(s)	532
SapI	GCTCTTC	4 cut(s)	2708, 2847, 3883, 4713
SchI	GAGTC	7 cut(s)	422, 530, 1004, 1457, 1754, 3494, 3969
SduI	GDGCHC	6 cut(s)	1583, 2398, 3190, 3623, 4450, 5036
SfcI	CTRYAG	4 cut(s)	654, 1869, 3506, 3606
SfoI	GGCGCC	1 cut(s)	3326
Sfr274I	CTCGAG	2 cut(s)	474, 3992
SfuI	TTCGAA	2 cut(s)	2523, 3155
SinI	GGWCC	9 cut(s)	599, 887, 900, 1142, 2012, 2483, 3759, 4039, 4382
SlaI	CTCGAG	2 cut(s)	474, 3992
SmaI	CCCGGG	1 cut(s)	4425
SmiMI	CAYNNNNRTG	7 cut(s)	684, 828, 882, 984, 1755, 1966, 2844
SmlI	CTYRAG	8 cut(s)	474, 1154, 1556, 1762, 2675, 2921, 3008, 3992
SmoI	CTYRAG	8 cut(s)	474, 1154, 1556, 1762, 2675, 2921, 3008, 3992
SseBI	AGGCCT	2 cut(s)	3060, 4681
SspDI	GGCGCC	1 cut(s)	3324
SspI	AATATT	1 cut(s)	4672
SstI	GAGCTC	2 cut(s)	2398, 5036
StuI	AGGCCT	2 cut(s)	3060, 4681
StyI	CCWWGG	6 cut(s)	159, 896, 1021, 1443, 1631, 4226
TaiI	ACGT	8 cut(s)	130, 832, 856, 1435, 3770, 3903, 4221, 4447
TaqII	GACCGA	1 cut(s)	3776
TatI	WGTACW	1 cut(s)	3004
TauI	GCSGC	3 cut(s)	2743, 2766, 3310
TscAI	CASTG	7 cut(s)	1731, 2574, 2760, 3363, 3637, 4218, 4858
TseFI	GTSAC	3 cut(s)	3833, 3884, 4844
Tsp45I	GTSAC	3 cut(s)	3833, 3884, 4844
TspGWI	ACGGA	5 cut(s)	132, 180, 768, 2837, 3593
TspMI	CCCGGG	1 cut(s)	4423
TspRI	CASTG	7 cut(s)	1731, 2574, 2760, 3363, 3637, 4218, 4858
Van91I	CCANNNNNTGG	1 cut(s)	3895
Vha464I	CTTAAG	1 cut(s)	3008
VneI	GTGCAC	1 cut(s)	4446
VpaK11BI	GGWCC	9 cut(s)	599, 887, 900, 1142, 2012, 2483, 3759, 4039, 4382
VspI	ATTAAT	2 cut(s)	3195, 4740
XagI	CCTNNNNNAGG	2 cut(s)	4371, 4593
XapI	RAATTY	7 cut(s)	448, 861, 1167, 1322, 2201, 3718, 4517
XbaI	TCTAGA	2 cut(s)	857, 3124
XceI	RCATGY	4 cut(s)	923, 958, 1787, 3834
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1450, 4586
XhoI	CTCGAG	2 cut(s)	474, 3992
XmaI	CCCGGG	1 cut(s)	4423
XmiI	GTMKAC	3 cut(s)	533, 1105, 3866
Zsp2I	ATGCAT	2 cut(s)	1921, 4282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.