Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011708

Physical Location & Seq

Genomic Coordinates Reverse (-)

6108655 .. 6117494

Gene Structure 8840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG071400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5208 bp

ATGGAGGGTTCGGAAGGAGATAATCAGAATCGGAACCATGAGAATAGCAATAGTAAATTGAACAATTCCGGCGAGGGAGGCAAGCCCAAGCGCCAGATGAAGACGCCGTTTCAGCTCGAAACCCTAGAGAAGGCCTATGCGTTGGAGACGTACCCATCGGAGTCGATTAGGGCGGAGCTGTCGGAGAAATTGGGGCTTTCCGATCGGCAGTTGCAGATGTGGTTCTGTCACAGAAGGCTGAAGGATAAGAAGGAAGGAGGTTCGGGTTCGGGTCCGGGTCCGGGTCCGGGTCCAGGACCGGCGAAGAAGCAGAGGAAATCAGTGGCGGTGTTGCCGGAGCCTCCAATTGATGACTTGGCACATGGGTCGGAGCCGGCGAGTGACTATGGGTCGGGTTCGGGCTCCGGCTCGAGCCCATTTGGTCATGCAGACCGCAATGTGGTGTCCAGGAGTGTTGTTGTTGAGGATATGCCAAGGAGGAGGCATTATGAGTCACAGCAGTCGATTACGGAGCTTAGAGCCATTGCTATTGTGGAAGCTCAATTGGGAGAGCCATTAAGGGAAGATGGCCCTGTGCTTGGGATAGAGTTTGATCAATTGCCCCCGGATGCATTCGGGGCACCTCTAGTTGCAGAGCAGCAGAAGCGGCATGATGCAAAACTAAATAAAGGTACTCCGAGATCTCTCCATGAATATCCATATCTTCAAGACCACCCCATTATTCGGCCTGATGTATATGGACAAGTTGCTCAATCTCATTTTCATGATTCAGCAATTGATGGTCCAACTGCAAGAGCTTCACCATTTGCAAGTGGAAATGAACAGTTGTCAAGGGTTCACGGTGGCCACAGTCGGGCTCGTCTTCTGTCACAACAGGAGAAGCAAGCAGTGGCCTTTTCATCTCCTGGTGATGATGGCTTACCTCAAAGGGACCCCTTTATCAATGTTAGAATGAATACTCAATATGGTGAACCCACTATTATTGCACCGGAAAACTCTAATGTATTGTCTGATGGTCAAATTAATGACACTATGCTGAGAATGGAGAGGAAACGCAAGAGTGAAGAAGTCAGAATGGCTAAAGAAGTAGAAGCTCATGAAGTTCGAATTCGGAAGGAGCTGGAGAAACAAGATATTCTGAGGAGAAAGAATGAGGAAAGAATGAGGAAAGAAATGGAAAGGCAAGACCGTGAAAGGCGAAAGGAGGAAGAGAGGTTGATGCGTGAGAGGCAGCGAGAGGAAGAGAGATCAAAGAAGGAGCAAAAACGTGAAATCGAACGAAGGGAGAAGTTTTTGCAAAAGGAACATATAAGAGCTGAGAAAAGGAGGCAAAAGGAAGAGCTCCGAAAAGAGAGAGAGGAAGTGAGACGCAAAGCTGCACTTGAGAAGGCTACTGCAAGAAGGCTTCTTAATAAATCTATGGAACTTTATGAGGATGAGCAACTAGAGCTAATGGAGTTGGCTGCTGCAAGCAAGGGATTATCCTCAATAATTAGTATTGATCCTGACACCAACCTTGATGAATTCAGAGATGATCTGACGGCATTTCCACCGAAGTCTGTGCTATTGAAAAAACCATTTGCAGTTCATCCGTGGATCGATTCAGAGGAGAACATCGGTAACTTTCTCATGGTTTGGAGATTTTTGATTACATTTGCAGATGTTCTTGAGTTATGGCCTTTTACTGTGGATGAGTTTGTTCAAGCTTTTCATGACTATGATTCAAGGTTGTTAGGAGAGATTCATGTTGCTCTCTTGAGGTTGATTATAAAGGATATAGAAGATGTTGCAAGGACACCTTCTACTGGACTAGGTCTCAATCAAAATGGTGCTGCTAATCCTGGAGGTGGACATCCACAGATTGTTGAAGGAGCATATGCGTGGGGATTTGACATAAGGAACTGGCAGAAGCACTTAAATCTGCTAACATGGCCTGAAATTTTTCGCCAACTAGCACTCTCTGCTGGATTTGGGCCACAGTTGAAGAAAAGGAGTATCTCATGGTCATACTTGCCTGATAATGATGAGGGTAAAGGTTGTCGTGATGTAATTTCAACTCTCCGCAATGGTTCAGCAGCTGAAAATGCATTTGCAATAATGCAAGAAAAGGGCTTATTAGCTCCACGGAGATCCAGACATCGGTTGACGCCAGGAACTGTAAAGTTTGCAGCTTTTCATGTCCTTTCTCTTGAGGGAAACAAGGGATTGACGGTGTTAGAACTTGCTGACAAGATTCAGAAATCTGGCCTTCGAGACCTGACAACAAGCAAGACTCCAGAGGCTTCAATTTCAGTTGCTCTGACAAGAGATACTAAGCTTTTTGAAAGAATTGCTCCTTCAACATATCGTGTACGATCTGCTTACAGAAAGGACCCTATTGATGCTGAGGCCATACTTTCTGCAGCTAGGAAGAAGGTTCAGATATTTGAAAATGGGATTTTAGCTGCAGAAGATGTCGATGAGGTTGAAAGAGATGATGCCGAAGAGGTTGAGAGAGATGAAGACTCTGATTGTGATGACGTTGATGAGGACCCTGAAGTTGATGACTTAGCTACTCCAGCCATAGTGAAGAAATCCCCTGATCAGTTTAATGAAGTGACTCCTTTTTCAGAGAATGGACAGGAAAATTTATGCATTGATGTTGCACCAACTGTGCAAAATGAGTTTGATAAGGATGTTTCATCTTTCCCTGTTACTGCTTCCAAAGAGGCAGACGGTCCAAGTGCTTCCTCCAAGCAGTGTGTTTCTGGTGTAGAAATTAGTACTAGCAATCTTGATCAAGAAAATATGGAGATTGATGAGAGCAAGGCAGGTGAGTCATGGGTTCAAGGGCTTACAGAAGGGGATTATTCTGATCTCAGTGTCGAAGAGCGTCTTAGTTCTCTCGTTTCCTTAATTGGTATTGCAAATGAAGGAAACTCGATTCGTGTTGTTCTTGAGGATCGCTTAGAAGCAGCAAATGCTCTTAAGAAGCAAATGTGGGCAGAGGCACAGCTTGACAAAAGTCGCCTAAAAGAAGAGAATGTGAGTAAATTTGATATTCCATCTTTCATGGGAGGCAAAGCTGAAGCACATGTTCCCGGAGTGGAAGACGGCCAAAGTCCTCTACTGGATGTTTATAATAGAATCAATGAGGAAGGAGCTGCAGAAACTCAAAATTCAAATCATTGTTCACAAGTACTTCTGAATGGTGTGCCTGTTGAAAGGGCCATGGTACCTCAAGATACTTCCATGGGTCCTGAAAACATCTTGAATCAGCAATTGGCTTATGCATCAAAAAAGTCACGTTCACAGTTGAAATCATATATTGCCCACAGAGCAGAGGAGATGTATGCTTACAGGTCCCTCCCTCTTGGCCAAGATCGCAGGCATAATCGATACTGGCAATTTGTTGCATCTGCATCGAGCAATGATCCTGGTTCAGGCAGAATCTTTATTGAACTAAACAATGGAAATTGGAGGCTTATTGACACCGAGGAGGCATTTGACACTCTTTTGATGTCACTGGATACACGTGGGATTAGAGAATCCCATTTACGCTTAATGTTGCAAAAGATTGAGGCATCCTTCAAGGAAAATGTTCGTAGAAATGTGCATCCTTCAAGTAGAAATCATGTTAAAAAAGAAGCTGATGAAATGGATTCTAGTCCCGACTACCCTTCGGGTTTCGACAGCCCTGGAAGTACAGTTTCTGCTTTAAATACTGACGTTGGGGAGACGTCCTCTTCTTTCAGAATTGAGCTTAACCGAAATGAAAATGAGAAAAGGGCTGCCTTGAGTAGGTATCAAGATTTTCAGAAGTGGATGTGGAGAGAATGCTTTAGTACATCTGCATTATGTGCCTCGAAATATGGGAAAAAGAGGTGCAGACAGCTCTTTGATTTTTGCGATTTCTGCCTCAGTTGTTACCACTTTGAAGACTCCCACTGCAGTTTCTGCCATCAGACGTTTGGTGCTACCTATGAAAATCTTGACTTTTCTGAACATGTAATACAATGTAAAGAGAGAAGGAACTTGGAAACTTGCGATATCCATATTCCTGGTACTTCTGTTCCTTTGGCCAGCAAATTGCTCAAGGCCTTCGTGGCTCTTGTTGAGGTATCTGTTCCACCAGAAGCCCTTCAATCCTTTTGGACAGAAGACTGTCGAAAGACGTGGGGAGCAAAACTGAATGCGTCATCATCTGTTGAAGATCTTCTGCAGATGTTAACTGTGTTTGAGACTGCGATGAAACGAGACTTTGTGTCATCAAACTTTGCAGCGACTGATGAATTACTGGGCTCCAGCAAACAGTCAGTGATTGCTAATCGTGATTATCTAGACACCAAATCAGTTTCTGTACTTCCTTGGATACCACATACCACGGCAGCTGTGGCTCTGAGGGTTTATGAGATGGACTCAGCAATTACATATATACCGAATGAGAAACCTGAGCCCAATGGTGACAAGGAAGTCGGAGAACATATTAAGATTCCTTTGAGATTCACCCCAATGAGAAATGATAGGGAGATCGAACCAACAGAGACAGACCACAACGAACAAAGTACTCACCTGAAAAGTGCACGAAACAGCCTCAAACGTGGTAGAGGAGGTCGTGAGCAAGGACGTGGTAAAAAGTCCAAATCTGGTGGTAGTCGGCGAAAAGCTAGAGGTAATGAGAATGAGAATATGAGTCAAGGATTAGGACCTGTGGGGCGAAGAACGCAGGGACAAGGGAGTGGACGGGGCCGACGTACTGTTAGAAAGAGGAGAATGAAGAACAGGGCTGTAGAGGGGACACTTATAGGTCATGTGACTGACCTACGCAGTAGCCCTGACAGTGGAGGGGAATCACCCAGAAACTTGGCTGGGGAATGGGATGATGAAAATATCAATATGATCCATATGAAAGGTGATGAACAACGAGAGGAGTATGAGCAAGCAGAGGCACTGGAATCTGATGACGAAGAACAAGCAGTGGGATATGAACAAGGGAACTGGGAGATTGGATTTGATGGGACCTCCAGCGGTTGGAACAGCGGTCTACGAGAACCTAGTGATGAGGAGATGGATGCTTCTGAAGATGATAATAATGGCATTGAGGAAGCGAGAGAAGAAGATTCGGAAGGGGATGTAGATATGAGTGATGCTTCAGATGAAGTCCCAAACAGGATTATAAATGATGATGGCACTGATTCAGCTTCAGACGATGATGATTACAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

1735

Amino Acids

195.05

Weight (kDa)

5.21

Isoelectric Point (pI)

51.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	28 - 84	8e-17	Homeodomain
DDT	PF02791	537 - 592	1.1e-19	DDT domain
HARE-HTH	PF05066	718 - 786	7.4e-19	HB1, ASXL, restriction endonuclease HTH domain
WHIM1	PF15612	936 - 980	3.5e-06	WSTF, HB1, Itc1p, MBD9 motif 1
WSD	PF15613	1113 - 1186	1.3e-21	Williams-Beuren syndrome DDT (WSD), D-TOX E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28420
fragaria_vesca	FvH4_3g08620
malus_domestica	MD05G1310200.v1.1 MD10G1289100.v1.1
prunus_persica	Prupe.4G052600_v2.0.a1
pyrus_communis	pycom05g28660 pycom10g24170
rosa_chinensis	RchiOBHm_Chr5g0009221
rosa_laevigata	RLG00000031635 RLG00000031641
rosa_multiflora	Rmu_sc0006233.1_g000030
rosa_roxburghii	Rroxscaffold_1G00066840 Rroxscaffold_1G00067540
rosa_rugosa	Rorug04G0441600
rosa_samantha	Rh5AG071400 Rh5BG067900 Rh5CG080200 Rh5DG067900
rosa_wichuraiana	Rw5G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1769, 3120, 5156
AarI	CACCTGC	1 cut(s)	2801
AasI	GACNNNNNNGTC	1 cut(s)	4451
AatII	GACGTC	1 cut(s)	3722
Acc36I	ACCTGC	1 cut(s)	2801
Acc65I	GGTACC	1 cut(s)	3214
AccB1I	GGYRCC	2 cut(s)	619, 3214
AccB7I	CCANNNNNTGG	1 cut(s)	5010
AccI	GTMKAC	1 cut(s)	5023
AciI	CCGC	7 cut(s)	173, 326, 433, 646, 2062, 5007, 5019
AclWI	GGATC	6 cut(s)	1496, 1604, 2124, 2949, 3407, 4873
AcoI	YGGCCR	4 cut(s)	844, 3094, 3355, 4059
AcsI	RAATTY	6 cut(s)	1107, 1523, 1938, 2626, 3032, 3157
AcuI	CTGAAG	6 cut(s)	260, 2556, 3087, 5079, 5115, 5166
AcvI	CACGTG	1 cut(s)	3515
AcyI	GRCGYC	3 cut(s)	104, 2147, 3719
AflII	CTTAAG	1 cut(s)	2966
AflIII	ACRYGT	3 cut(s)	3073, 3512, 3985
AhdI	GACNNNNNGTC	2 cut(s)	388, 4243
AjiI	CACGTC	2 cut(s)	4155, 4607
AjnI	CCWGG	8 cut(s)	292, 446, 904, 1840, 2149, 3415, 3676, 4039
AjuI	GAANNNNNNNTTGG	2 cut(s)	3245, 3277
Alw21I	GWGCWC	2 cut(s)	1344, 4564
Alw26I	GTCTC	8 cut(s)	140, 1360, 1820, 2247, 3710, 4214, 4230, 4517
Alw44I	GTGCAC	1 cut(s)	4560
AlwI	GGATC	6 cut(s)	1496, 1604, 2124, 2949, 3407, 4873
AlwNI	CAGNNNCTG	6 cut(s)	2078, 2156, 3692, 3936, 4265, 4337
Ama87I	CYCGRG	1 cut(s)	409
ApaLI	GTGCAC	1 cut(s)	4560
ApoI	RAATTY	6 cut(s)	1107, 1523, 1938, 2626, 3032, 3157
AseI	ATTAAT	1 cut(s)	1023
Asp700I	GAANNNNTTC	4 cut(s)	1941, 3579, 4119, 4194
Asp718I	GGTACC	1 cut(s)	3214
AspLEI	GCGC	1 cut(s)	93
AsuC2I	CCSGG	5 cut(s)	276, 282, 288, 605, 3081
AsuHPI	GGTGA	9 cut(s)	792, 920, 980, 2825, 4454, 4477, 4541, 4824, 4904
AsuII	TTCGAA	1 cut(s)	1105
AvaI	CYCGRG	1 cut(s)	409
BaeGI	GKGCMC	2 cut(s)	622, 4564
BaeI	ACNNNNGTAYC	2 cut(s)	4035, 4068
BalI	TGGCCA	3 cut(s)	846, 3357, 4061
BanI	GGYRCC	2 cut(s)	619, 3214
BanII	GRGCYC	6 cut(s)	404, 416, 859, 1344, 4283, 4437
BbrPI	CACGTG	1 cut(s)	3515
BbsI	GAAGAC	6 cut(s)	107, 854, 2508, 3096, 3924, 4146
Bbv12I	GWGCWC	2 cut(s)	1344, 4564
BbvCI	CCTCAGC	1 cut(s)	2385
BceAI	ACGGC	4 cut(s)	91, 1557, 3109, 4380
BcgI	CGANNNNNNTGC	6 cut(s)	348, 382, 1543, 1577, 3384, 3418
BciT130I	CCWGG	8 cut(s)	294, 448, 906, 1842, 2151, 3417, 3678, 4041
BciVI	GTATCC	2 cut(s)	3502, 4344
BclI	TGATCA	3 cut(s)	592, 2581, 2776
BcnI	CCSGG	5 cut(s)	276, 282, 288, 605, 3081
BcoDI	GTCTC	8 cut(s)	140, 1360, 1820, 2247, 3710, 4214, 4230, 4517
BfmI	CTRYAG	6 cut(s)	2400, 2445, 3144, 3928, 4199, 4767
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	2966
BfuAI	ACCTGC	1 cut(s)	2801
BfuI	GTATCC	2 cut(s)	3502, 4344
BglI	GCCNNNNNGGC	1 cut(s)	4085
BglII	AGATCT	2 cut(s)	680, 4192
BmcAI	AGTACT	3 cut(s)	2764, 3180, 4546
BmeRI	GACNNNNNGTC	2 cut(s)	388, 4243
BmeT110I	CYCGRG	1 cut(s)	409
BmgBI	CACGTC	2 cut(s)	4155, 4607
BmrI	ACTGGG	2 cut(s)	4286, 4987
BmuI	ACTGGG	2 cut(s)	4286, 4987
BoxI	GACNNNNGTC	1 cut(s)	3003
BpiI	GAAGAC	6 cut(s)	107, 854, 2508, 3096, 3924, 4146
BplI	GAGNNNNNCTC	4 cut(s)	3707, 3739, 4382, 4414
BpmI	CTGGAG	6 cut(s)	1142, 1863, 2259, 2541, 4267, 4987
Bpu10I	CCTNAGC	2 cut(s)	2385, 4431
Bpu14I	TTCGAA	1 cut(s)	1105
BpuEI	CTTGAG	8 cut(s)	1403, 1688, 1777, 2210, 2957, 3204, 3796, 4058
BpuMI	CCSGG	5 cut(s)	276, 282, 288, 605, 3081
Bsa29I	ATCGAT	2 cut(s)	1599, 3376
BsaAI	YACGTR	1 cut(s)	3515
BsaHI	GRCGYC	3 cut(s)	104, 2147, 3719
BsaI	GGTCTC	2 cut(s)	1820, 2247
BsaWI	WCCGGW	1 cut(s)	988
Bse118I	RCCGGY	2 cut(s)	298, 373
Bse1I	ACTGG	8 cut(s)	1810, 1907, 3114, 3386, 3510, 4281, 4935, 4982
Bse3DI	GCAATG	4 cut(s)	442, 522, 2071, 3415
BseBI	CCWGG	8 cut(s)	294, 448, 906, 1842, 2151, 3417, 3678, 4041
BseCI	ATCGAT	2 cut(s)	1599, 3376
BseMI	GCAATG	4 cut(s)	442, 522, 2071, 3415
BseMII	CTCAG	9 cut(s)	1028, 1130, 1308, 2376, 2872, 3913, 4370, 4413, 4422
BseNI	ACTGG	8 cut(s)	1810, 1907, 3114, 3386, 3510, 4281, 4935, 4982
BseRI	GAGGAG	9 cut(s)	493, 1156, 1622, 3338, 3491, 4602, 4762, 4922, 5057
BseSI	GKGCMC	2 cut(s)	622, 4564
BseYI	CCCAGC	1 cut(s)	4847
BsgI	GTGCAG	2 cut(s)	1362, 3886
Bsh1285I	CGRYCG	1 cut(s)	205
BshNI	GGYRCC	2 cut(s)	619, 3214
BshVI	ATCGAT	2 cut(s)	1599, 3376
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	2 cut(s)	1344, 4564
BsiHKCI	CYCGRG	1 cut(s)	409
BslFI	GGGAC	7 cut(s)	944, 3328, 3633, 4722, 4789, 5011, 5126
BsmAI	GTCTC	8 cut(s)	140, 1360, 1820, 2247, 3710, 4214, 4230, 4517
BsmBI	CGTCTC	3 cut(s)	140, 1360, 3710
BsmFI	GGGAC	7 cut(s)	944, 3328, 3633, 4722, 4789, 5011, 5126
BsmI	GAATGC	3 cut(s)	611, 3821, 4177
Bso31I	GGTCTC	2 cut(s)	1820, 2247
BsoBI	CYCGRG	1 cut(s)	409
Bsp119I	TTCGAA	1 cut(s)	1105
Bsp1286I	GDGCHC	8 cut(s)	404, 416, 622, 859, 1344, 4283, 4437, 4564
Bsp19I	CCATGG	2 cut(s)	3210, 3231
BspACI	CCGC	7 cut(s)	173, 326, 433, 646, 2062, 5007, 5019
BspCNI	CTCAG	9 cut(s)	1029, 1131, 1309, 2377, 2871, 3912, 4371, 4412, 4423
BspDI	ATCGAT	2 cut(s)	1599, 3376
BspHI	TCATGA	3 cut(s)	763, 1096, 1711
BspMAI	CTGCAG	5 cut(s)	2404, 2449, 3148, 3932, 4203
BspMI	ACCTGC	1 cut(s)	2801
BspPI	GGATC	6 cut(s)	1496, 1604, 2124, 2949, 3407, 4873
BspQI	GCTCTTC	2 cut(s)	1332, 2862
BspT104I	TTCGAA	1 cut(s)	1105
BspT107I	GGYRCC	2 cut(s)	619, 3214
BspTI	CTTAAG	1 cut(s)	2966
BspTNI	GGTCTC	2 cut(s)	1820, 2247
BsrDI	GCAATG	4 cut(s)	442, 522, 2071, 3415
BsrFI	RCCGGY	2 cut(s)	298, 373
BsrI	ACTGG	8 cut(s)	1810, 1907, 3114, 3386, 3510, 4281, 4935, 4982
BssAI	RCCGGY	2 cut(s)	298, 373
BssNI	GRCGYC	3 cut(s)	104, 2147, 3719
BssT1I	CCWWGG	4 cut(s)	473, 3210, 3231, 4346
Bst2UI	CCWGG	8 cut(s)	294, 448, 906, 1842, 2151, 3417, 3678, 4041
Bst6I	CTCTTC	7 cut(s)	1203, 1236, 1332, 2478, 2862, 3012, 3730
BstACI	GRCGYC	3 cut(s)	104, 2147, 3719
BstAFI	CTTAAG	1 cut(s)	2966
BstAPI	GCANNNNNTGC	4 cut(s)	1961, 2960, 3839, 3936
BstBAI	YACGTR	1 cut(s)	3515
BstBI	TTCGAA	1 cut(s)	1105
BstC8I	GCNNGC	7 cut(s)	83, 375, 885, 1471, 3368, 4063, 4920
BstDSI	CCRYGG	5 cut(s)	1592, 2123, 3210, 3231, 4362
BstENI	CCTNNNNNAGG	3 cut(s)	128, 3420, 3778
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstMAI	GTCTC	8 cut(s)	140, 1360, 1820, 2247, 3710, 4214, 4230, 4517
BstMCI	CGRYCG	1 cut(s)	205
BstNI	CCWGG	8 cut(s)	294, 448, 906, 1842, 2151, 3417, 3678, 4041
BstNSI	RCATGY	2 cut(s)	3077, 3989
BstPAI	GACNNNNGTC	1 cut(s)	3003
BstSFI	CTRYAG	6 cut(s)	2400, 2445, 3144, 3928, 4199, 4767
BstSLI	GKGCMC	2 cut(s)	622, 4564
BstV2I	GAAGAC	6 cut(s)	107, 854, 2508, 3096, 3924, 4146
BstX2I	RGATCY	3 cut(s)	680, 2129, 4192
BstXI	CCANNNNNNTGG	2 cut(s)	4040, 4843
BstYI	RGATCY	3 cut(s)	680, 2129, 4192
Bsu15I	ATCGAT	2 cut(s)	1599, 3376
BsuI	GTATCC	2 cut(s)	3502, 4344
BsuTUI	ATCGAT	2 cut(s)	1599, 3376
BtgI	CCRYGG	5 cut(s)	1592, 2123, 3210, 3231, 4362
BtgZI	GCGATG	1 cut(s)	4241
BtrI	CACGTC	2 cut(s)	4155, 4607
BtsI	GCAGTG	4 cut(s)	894, 2744, 3925, 4962
BveI	ACCTGC	1 cut(s)	2801
Cac8I	GCNNGC	7 cut(s)	83, 375, 885, 1471, 3368, 4063, 4920
CaiI	CAGNNNCTG	6 cut(s)	2078, 2156, 3692, 3936, 4265, 4337
CciI	TCATGA	3 cut(s)	763, 1096, 1711
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	2 cut(s)	298, 373
ClaI	ATCGAT	2 cut(s)	1599, 3376
CseI	GACGC	5 cut(s)	112, 1377, 2155, 2861, 4164
CspCI	CAANNNNNGTGG	4 cut(s)	964, 999, 4609, 4644
DraI	TTTAAA	1 cut(s)	3699
DrdI	GACNNNNNNGTC	1 cut(s)	4451
DriI	GACNNNNNGTC	2 cut(s)	388, 4243
DseDI	GACNNNNNNGTC	1 cut(s)	4451
EaeI	YGGCCR	4 cut(s)	844, 3094, 3355, 4059
Eam1104I	CTCTTC	7 cut(s)	1203, 1236, 1332, 2478, 2862, 3012, 3730
Eam1105I	GACNNNNNGTC	2 cut(s)	388, 4243
EarI	CTCTTC	7 cut(s)	1203, 1236, 1332, 2478, 2862, 3012, 3730
EciI	GGCGGA	1 cut(s)	188
Ecl136II	GAGCTC	1 cut(s)	1342
Eco130I	CCWWGG	4 cut(s)	473, 3210, 3231, 4346
Eco147I	AGGCCT	2 cut(s)	134, 4079
Eco24I	GRGCYC	6 cut(s)	404, 416, 859, 1344, 4283, 4437
Eco31I	GGTCTC	2 cut(s)	1820, 2247
Eco32I	GATATC	1 cut(s)	4030
Eco53kI	GAGCTC	1 cut(s)	1342
Eco57I	CTGAAG	6 cut(s)	260, 2556, 3087, 5079, 5115, 5166
Eco72I	CACGTG	1 cut(s)	3515
Eco88I	CYCGRG	1 cut(s)	409
EcoICRI	GAGCTC	1 cut(s)	1342
EcoNI	CCTNNNNNAGG	3 cut(s)	128, 3420, 3778
EcoO109I	RGGNCCY	7 cut(s)	931, 2371, 2530, 3236, 3342, 4685, 4998
EcoRI	GAATTC	2 cut(s)	1107, 1523
EcoRII	CCWGG	8 cut(s)	292, 446, 904, 1840, 2149, 3415, 3676, 4039
EcoRV	GATATC	1 cut(s)	4030
EcoT14I	CCWWGG	4 cut(s)	473, 3210, 3231, 4346
EcoT22I	ATGCAT	4 cut(s)	613, 2089, 2636, 3274
EcoT38I	GRGCYC	6 cut(s)	404, 416, 859, 1344, 4283, 4437
ErhI	CCWWGG	4 cut(s)	473, 3210, 3231, 4346
Esp3I	CGTCTC	3 cut(s)	140, 1360, 3710
FalI	AAGNNNNNCTT	6 cut(s)	1365, 1397, 1783, 1815, 2859, 2891
FaqI	GGGAC	7 cut(s)	944, 3328, 3633, 4722, 4789, 5011, 5126
FauNDI	CATATG	2 cut(s)	1876, 4884
FbaI	TGATCA	3 cut(s)	592, 2581, 2776
FblI	GTMKAC	1 cut(s)	5023
FriOI	GRGCYC	6 cut(s)	404, 416, 859, 1344, 4283, 4437
GlaI	GCGC	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	4851
GsuI	CTGGAG	6 cut(s)	1142, 1863, 2259, 2541, 4267, 4987
HaeII	RGCGCY	1 cut(s)	94
HgaI	GACGC	5 cut(s)	112, 1377, 2155, 2861, 4164
HhaI	GCGC	1 cut(s)	93
Hin1I	GRCGYC	3 cut(s)	104, 2147, 3719
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	2 cut(s)	2145, 4209
HindII	GTYRAC	2 cut(s)	2145, 4209
HindIII	AAGCTT	2 cut(s)	1704, 2315
HpaI	GTTAAC	1 cut(s)	4209
HphI	GGTGA	9 cut(s)	792, 920, 980, 2825, 4454, 4477, 4541, 4824, 4904
Hpy99I	CGWCG	1 cut(s)	4734
Hsp92I	GRCGYC	3 cut(s)	104, 2147, 3719
HspAI	GCGC	1 cut(s)	91
KflI	GGGWCCC	1 cut(s)	931
KpnI	GGTACC	1 cut(s)	3218
KroI	GCCGGC	1 cut(s)	373
KroNI	GCCGGC	1 cut(s)	375
Ksp22I	TGATCA	3 cut(s)	592, 2581, 2776
KspAI	GTTAAC	1 cut(s)	4209
LguI	GCTCTTC	2 cut(s)	1332, 2862
MfeI	CAATTG	5 cut(s)	345, 542, 596, 774, 3260
MflI	RGATCY	3 cut(s)	680, 2129, 4192
MhlI	GDGCHC	8 cut(s)	404, 416, 622, 859, 1344, 4283, 4437, 4564
MlsI	TGGCCA	3 cut(s)	846, 3357, 4061
MluNI	TGGCCA	3 cut(s)	846, 3357, 4061
MlyI	GAGTC	9 cut(s)	170, 500, 2266, 2498, 2593, 2825, 3914, 4391, 4681
MmeI	TCCRAC	6 cut(s)	123, 162, 348, 809, 4435, 4991
Mox20I	TGGCCA	3 cut(s)	846, 3357, 4061
Mph1103I	ATGCAT	4 cut(s)	613, 2089, 2636, 3274
MroNI	GCCGGC	1 cut(s)	373
MroXI	GAANNNNTTC	4 cut(s)	1941, 3579, 4119, 4194
MscI	TGGCCA	3 cut(s)	846, 3357, 4061
MslI	CAYNNNNRTG	4 cut(s)	762, 1716, 1879, 4490
Msp20I	TGGCCA	3 cut(s)	846, 3357, 4061
MspA1I	CMGCKG	4 cut(s)	2078, 4370, 5007, 5019
MspCI	CTTAAG	1 cut(s)	2966
MunI	CAATTG	5 cut(s)	345, 542, 596, 774, 3260
Mva1269I	GAATGC	3 cut(s)	611, 3821, 4177
MvaI	CCWGG	8 cut(s)	294, 448, 906, 1842, 2151, 3417, 3678, 4041
NaeI	GCCGGC	1 cut(s)	375
NciI	CCSGG	5 cut(s)	276, 282, 288, 605, 3081
NcoI	CCATGG	2 cut(s)	3210, 3231
NdeI	CATATG	2 cut(s)	1876, 4884
NgoMIV	GCCGGC	1 cut(s)	373
NmuCI	GTSAC	9 cut(s)	227, 380, 492, 867, 2596, 3282, 3501, 4442, 4792
NsiI	ATGCAT	4 cut(s)	613, 2089, 2636, 3274
NspI	RCATGY	2 cut(s)	3077, 3989
NspV	TTCGAA	1 cut(s)	1105
PaeR7I	CTCGAG	1 cut(s)	409
PagI	TCATGA	3 cut(s)	763, 1096, 1711
PaqCI	CACCTGC	1 cut(s)	2801
PceI	AGGCCT	2 cut(s)	134, 4079
PciI	ACATGT	2 cut(s)	3073, 3985
PciSI	GCTCTTC	2 cut(s)	1332, 2862
PcsI	WCGNNNNNNNCGW	2 cut(s)	374, 4729
PctI	GAATGC	3 cut(s)	611, 3821, 4177
PdiI	GCCGGC	1 cut(s)	375
PdmI	GAANNNNTTC	4 cut(s)	1941, 3579, 4119, 4194
PflFI	GACNNNGTC	1 cut(s)	1812
PflMI	CCANNNNNTGG	1 cut(s)	5010
PfoI	TCCNGGA	4 cut(s)	292, 446, 1840, 3079
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	9 cut(s)	169, 499, 2266, 2498, 2593, 2824, 3914, 4391, 4680
PmaCI	CACGTG	1 cut(s)	3515
PmlI	CACGTG	1 cut(s)	3515
PpsI	GAGTC	9 cut(s)	169, 499, 2266, 2498, 2593, 2824, 3914, 4391, 4680
Ppu21I	YACGTR	1 cut(s)	3515
PpuMI	RGGWCCY	7 cut(s)	931, 2371, 2530, 3236, 3342, 4685, 4998
PscI	ACATGT	2 cut(s)	3073, 3985
PshAI	GACNNNNGTC	1 cut(s)	3003
PshBI	ATTAAT	1 cut(s)	1023
PsiI	TTATAA	3 cut(s)	1769, 3120, 5156
Psp124BI	GAGCTC	1 cut(s)	1344
Psp5II	RGGWCCY	7 cut(s)	931, 2371, 2530, 3236, 3342, 4685, 4998
Psp6I	CCWGG	8 cut(s)	292, 446, 904, 1840, 2149, 3415, 3676, 4039
PspCI	CACGTG	1 cut(s)	3515
PspFI	CCCAGC	1 cut(s)	4847
PspGI	CCWGG	8 cut(s)	292, 446, 904, 1840, 2149, 3415, 3676, 4039
PspPPI	RGGWCCY	7 cut(s)	931, 2371, 2530, 3236, 3342, 4685, 4998
PspXI	VCTCGAGB	1 cut(s)	409
PsrI	GAACNNNNNNTAC	2 cut(s)	3975, 4007
PstI	CTGCAG	5 cut(s)	2404, 2449, 3148, 3932, 4203
PstNI	CAGNNNCTG	6 cut(s)	2078, 2156, 3692, 3936, 4265, 4337
PsuI	RGATCY	3 cut(s)	680, 2129, 4192
PsyI	GACNNNGTC	1 cut(s)	1812
PvuI	CGATCG	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	2078, 4370
RseI	CAYNNNNRTG	4 cut(s)	762, 1716, 1879, 4490
SacI	GAGCTC	1 cut(s)	1344
SapI	GCTCTTC	2 cut(s)	1332, 2862
ScaI	AGTACT	3 cut(s)	2764, 3180, 4546
SchI	GAGTC	9 cut(s)	170, 500, 2266, 2498, 2593, 2825, 3914, 4391, 4681
SduI	GDGCHC	8 cut(s)	404, 416, 622, 859, 1344, 4283, 4437, 4564
SfcI	CTRYAG	6 cut(s)	2400, 2445, 3144, 3928, 4199, 4767
Sfr274I	CTCGAG	1 cut(s)	409
SfuI	TTCGAA	1 cut(s)	1105
SlaI	CTCGAG	1 cut(s)	409
SmiMI	CAYNNNNRTG	4 cut(s)	762, 1716, 1879, 4490
SseBI	AGGCCT	2 cut(s)	134, 4079
SsiI	CCGC	7 cut(s)	173, 326, 433, 646, 2062, 5007, 5019
SstI	GAGCTC	1 cut(s)	1344
StuI	AGGCCT	2 cut(s)	134, 4079
StyI	CCWWGG	4 cut(s)	473, 3210, 3231, 4346
TatI	WGTACW	6 cut(s)	2762, 3178, 3683, 3824, 4339, 4544
TauI	GCSGC	1 cut(s)	649
TseFI	GTSAC	9 cut(s)	227, 380, 492, 867, 2596, 3282, 3501, 4442, 4792
Tsp45I	GTSAC	9 cut(s)	227, 380, 492, 867, 2596, 3282, 3501, 4442, 4792
TspGWI	ACGGA	3 cut(s)	524, 1581, 2140
Tth111I	GACNNNGTC	1 cut(s)	1812
Van91I	CCANNNNNTGG	1 cut(s)	5010
Vha464I	CTTAAG	1 cut(s)	2966
VneI	GTGCAC	1 cut(s)	4560
VspI	ATTAAT	1 cut(s)	1023
XagI	CCTNNNNNAGG	3 cut(s)	128, 3420, 3778
XapI	RAATTY	6 cut(s)	1107, 1523, 1938, 2626, 3032, 3157
XbaI	TCTAGA	1 cut(s)	4318
XceI	RCATGY	2 cut(s)	3077, 3989
XcmI	CCANNNNNNNNNTGG	3 cut(s)	529, 3947, 4369
XhoI	CTCGAG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	5023
XmnI	GAANNNNTTC	4 cut(s)	1941, 3579, 4119, 4194
ZraI	GACGTC	1 cut(s)	3720
ZrmI	AGTACT	3 cut(s)	2764, 3180, 4546
Zsp2I	ATGCAT	4 cut(s)	613, 2089, 2636, 3274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.