Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011708

Physical Location & Seq

Genomic Coordinates Forward (+)

5034455 .. 5044105

Gene Structure 9651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g08620.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5229 bp

ATGGAGGGTTCGGAAGGAGATAATCAGAATCGGAACCATGAGAATAGCAATAGTAAATTGAACAATTCCGGCGACGGAGGAGGAGGCAAGCCCAAGCGCCAGATGAAGACGCCGTTTCAGCTGGAAGCCCTAGAGAAGGCCTATGCTGTGGAGACGTACCCGTCGGAGTCGATTAGGGCGGAGCTGTCGGAAAAATTGGGGCTTTCCGATCGGCAATTACAGATGTGGTTCTGTCATAGGAGGTTGAAGGACAAGAAGGAAGGGGGTTCGGGTTCGGGTCCGGGTCCGGGTCCAGGTCCAGGTCCAGGTCCGGCGAAGAAGCAGAGGAAAGCAGTGGCGGTTTTGCCGGAGCCTCCTATTGATGACTTGGCACATGGGTCGGAGCCGGGGAGTGATTATGGATCGGGTTCGGGCTCCGGCTCAAGCCCGTTTGGTCATGCAGACCGCAATGTGGTGTCTAGGAATGTTGTTGTGGTTGAGGATGTGCCAAGGACGAGGCATTATGGGTCACAGCAGTCGATAACGGAGCTTAGAGCCATTGCTATAGTGGAAGCTCAACTGGGAGAGCCGTTGAGGGAGGATGGCCCGGTGCTTGGGATAGAGTTTGATCCATTGCCCCCGGATGCATTCGGGGCACCTCTAGTTGCAGAGCAGCAGAAGCGGAATGAATCAAAACCAAATAAAGGTACTCCGAGATCTCTCCATGAATATCCATATCTTCAAGACCACTCCAGTGTTCGGCCTGATGTATATGGACATGTTGCTCAATCTCATTTTCGTGATTCAGCAATTGATGGTCCAAATGCAAGAACTTCACCCTTTGCAAGTGGAAATGAACAGTTGCCAAGGGTTCATGGTGGCCACGGTCGGGCTCGTCTTCTGTCACAACAGGAGAGGCAAGCAGTGACCTTTGCATCCCCTGGTGATGATGGCTTACCTCAAAGGGACGCCTTTATCAATGGTAGAATGAGTACTCAATATAGTGAACCCCCTTTTATTGCACCTGAAAGCTCTAATGTGTTGTCTGATGGTCAAATTAACGACACTATGCTGAGAATGGAGAGGAAACGCAAGGGTGAAGATGTCAGAATGGCTAAAGAAGTAGAAGCTCATGAAGTTCGAATCCGGAAGGAGATGGAGAAACAAGATATTCTGAGGAGAAAGAATGAGGAAAGAATCAGGAGAGAAATGGAAAGGCAAGACCGTGAAAGGAGAAAGGAGGAAGAGAGATTGATGCGTGAAAGGCAGCGAGAGGAAGAGAGATCAAAGAAGGAGCAAAAACGTGAAAACGAACGAAGGGAGAAGTTTTTGCAGAAAGAAAATATAAGAGCTGAGAAAAGGAGGCAAAGGGAAGAACTCAGGAAAGAGAGAGAGGAAGTGAGACGCAAAGCTGCACTTGAGAAGGCTACTGCAAGAAGGCTTCTTAATAAATCTATGGAACTTTACGAGGATGAGCAACTAGAGCTAATGGAGTTGGCTGCTGCAAGCAAGGGATTATCTTCAATAATTAGTATTGATCCTGACACCAACCTTGATGCATTCAGAGATGATCTGACTGCATTTCCACCCAAGTCTGTGCTCTTAAAAAGACCATTTGCAGTTCATCCGTGGATCGATTCAGAGGAAAACATTGGCAACTTTCTCATGGTTTGGAGATTTTTGATTACATTTGCAGATATTCTTGAGTTATGGCCTTTTACTCTGGATGAGTTTGTTCAAGCTTTTCATGACTATGATTCAAGGTTGTTAGGAGAGATTCATGTTGCTCTCTTAAGGTTGATTATAAAGGATATAGAAGATGTTGCAAGGACACCATCTACTGGACTAGGACTCAATCAAAATGGTGCTGCTAATCCTGGAGGTGGACATCCACAAATTGTTGAAGGAGCATATGCATGGGGGTTTGACATAAGGAACTGGCAACAGCACTTAAATCTACTAACATGGCCTGAAATTTTTCGCCAACTAGCACTCTCTGCTGGATTTGGGCCTCAGTTGAAGAAGAGGAGCATCTCATGGTCATACTTGCCTGATAATGATGAGGGTAAAGGTTGTCATGATGTAATTTCAACTCTGCGCAATGGTTCAGCAGCTGAAAATGCATTTGCAATAATGCAAGAAAAGGGCTTATTAGCTCCAAGGAGATCCAGACATCGGTTGACGCCAGGAACTGTTAAATTTGCTGCTTTTCATGTTCTTTCTCTTGAGGGAAACAAGGGATTAACGGTGTTAGAACTCGCTGAAAAGATTCAGAAATCTGGCCTTCGAGACCTGACAACAAGCAAGACGCCAGAGGCTTCAATTTCTGTTGCTCTGACAAGAGATACTAAACTTTTCGAAAGAATTGCTCCTTCAACATATCGTGTACGATCTGCTTACAGAAAGGACCCTACTGATGCTGAGGCCATACTTACTGCAGCTAGGAAGAAAGTTCAGATATTCGAAACTGGGATTTTAGCTGCAGAAGATGTCGATGAGGTTGAAAGAGATGATGTCGAAGAGGTTGAGAGAGATGAAGACTCTGAATGTGATGACGTTGATGAGGATCCCGAAGTTGATGACTTAGCTACTCCAGCCATTGTAAAGAAATCCCCTGATCAGTATAATGAAGTGACACCTTTCTCAGAGAATGGACAGGAAGATGTATGCAATGATGTTGCACAAAATGTGCAAAATGAGATGGATAAGGATGTATCACCTATTCCAGTCAGTGCTTCCAAAGAGGCAGACGGTCCAAGTGCTTCCTCCAAGCAGTGTGTTTCTGGTGTAGAAGTTAGTACTAGCAATCTTGATCAAGATAATATGGAGATTGATGAGAGCAAGGCAGGTGAATCATGGGTTCAAGGGCTTACTGAAGGGGATTATTCTGATCTCAGTGTTGAAGAGCGTCTTAATTCTCTTGTTTCCTTAATTGGTATTGCAAATGAAGGAAACTCCATTCGTGTTGTTCTTGAGGATCGCCTAGAAGCAGCAAATGCTCTTAAGAAGCAAATGTGGGCGGACGCACAGCTTGACAAAAGTCGCCTAAAAGAAGAGAATGTGAGTAGATTAGATATTCCATCTTTTATGGTAGGCAAAGCGGAACATGTTACTGGAGTGGAAGATGGCCAAAGTCCTCTACTGGATATTGATAGTAGAATCAATGAGGAAGGAGCTGCAGAAAATCAAAGTTCAAATCATGGTTCACAAGTAATTCTGAATCACCTTCACGGTGTGCCTATTGAAAGGGCCCTGGTACCTCAGGATATTTCCATGGGTCCTGAAAACATCTTGAATCAGCAATTGGCTTACGCATCAAAAAAATCACGTTCACAGTTGAAATCATATATTGCCCACAAAGCAGAGGAGATGTATGCTTACAGGTCCCTCCCTCTTGGCCAGGATCGCAGGCACAATCGATACTGGCAATTTGTTGCATCTGCATCAAGCAGTGATCCTGGTTCAGGCAGAATCTTCATTGAACTGAACAATGGAAATTGGAGGCTTATTGACACCGAAGAGGCATTTGACACTCTTTTGATGTCGCTGGATACACGTGGCATTAGAGAATCCCATTTACGCTTAATGTTGCAAAAGATTGAGGCATCCTTCAAGGAAAATGTTCGTAAAAATGTGCATCTTTCAAGTAGAAATCGTGTTAAAAAAGAAGCTGATGATATGGATTCTAGTCCAGACTACCCTTCGAGTTTTGACAGCCCTGGAAGTACTGTTTCTGCTTTAAATTCTGAGATGGGGGAGACATCCTCTTCGTTTAGAATTGAGCTTAACAGAAATGAAAATGAGAAAAGGGCGGCCTTGAGAAGGTATCAAGATTTTCAGAAGTGGATGTGGAGAGAATGCTTTAGCACATCCGCATTATGTGCCTCAAAATATGGGCAAAAGAGATGCAGACAGCTCTTTGATCTTTGCGATTTCTGCCTCTGTTGTTACCATTTTGAGGACTCCCATTGCAGTTTCTGTCATCAGACTTTTGGTGCTACCTATGAAAATCTTGACTTTTCTGAACATGTAATACAATGTAAAGAGAGAAGGAATTTGGAAACATGCGATATCCATGTACCAGGCATTTCTGTTCCTTTGGCCAGCAGACTGCTCAAGGCCTTCATAACTCTTGTTGAGGTATCTGTTCCACCAGAAGCCCTTCAATCCTTTTGGACAGAAGACTGTCGAAAGACGTGGGGAGCCAAACTGAATGCGTCATCATCGGTTGAAGAACTTTTGCAGATGTTAACTCTGTTTGAGACTGCGATAAAACGAGACTTTGTGTCATCAAACTTTGCAGCCACCGATGAATTACTGGGTTCCGGCAAACAGTCAGCGATTGCTAATAGTGATAATCTAGACACCAAATCAATTTCTGTACTTCCTTGGATACCACATACAACGGCAGCTGTGGCTCTGAGGGTTTATGAGATGGATTCGGCAATTACTTATGTACCACATGAAAAACCTGAGCCCAATGGTGACAAGGAAGTTGGAGAACATATTAAGATTCCTTTGAGATTCACCCCTATGAGGAATGATAGGGAGTTCGAACCAGCAGCGTCAGACCTCAATGAACAAAGTACTCACCTGAAAAGTGCACGAAACAGCCTCAAACGTGGTAGAGGAGGTCGCGAGCAAGGCCGTGGTAAAAAATCCAAATCTGGTGGTAGTCGGCGAAAAGCCAGAGGTAATGAGATTGAGAATATGAGGCAAGGATTGGGACCTGTGGGGCGGAGACCACAGGGACAAGGGAGTGGACGAGGCCGACGTACTGTTAGAAAGAGGAGAATGAAGAACAGCGCTGTTGAGGGGACGCTTATTGGCCATACGACTGACCTACGCAGTAGCCCTGACAGTGGAGAGGAATCACCCAGAAACTTGGCTGGGGAATGGGACGATGAAAATATCAATATGATCCATATGAAAGGTGATGAACGAGGAGAGAGGTATGAGCAAGCAGAGGCACTGGAGTCTGAAGACGAAGACCAAGCAGTAGGATATGAACAAGGGAACTGGGAGATTGGGTTTGATGGGATCTCCGGTGGATGGAACGGCGGCTTACAAGAACCGAGTGATGAGGACATGGGTGCTTCTGAAGATGACAATAACGGCATTGAGGAAGTGAGAGAAGAAGATTCGGAAGGCGATGTAGAAATGAGTGATGCTTCAGATGAAGTACCAAACAGGATTATAAATGATGATGGCTCTGATTCAGCTTCAGATGATGATGACTACAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

1743

Amino Acids

195.17

Weight (kDa)

5.2

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 86	6.4e-17	Homeodomain
DDT	PF02791	542 - 597	4.1e-20	DDT domain
HARE-HTH	PF05066	723 - 791	3.5e-19	HB1, ASXL, restriction endonuclease HTH domain
WHIM1	PF15612	941 - 985	1.3e-06	WSTF, HB1, Itc1p, MBD9 motif 1
WSD	PF15613	1120 - 1193	1.3e-21	Williams-Beuren syndrome DDT (WSD), D-TOX E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28420
fragaria_vesca	FvH4_3g08620
malus_domestica	MD05G1310200.v1.1 MD10G1289100.v1.1
prunus_persica	Prupe.4G052600_v2.0.a1
pyrus_communis	pycom05g28660 pycom10g24170
rosa_chinensis	RchiOBHm_Chr5g0009221
rosa_laevigata	RLG00000031635 RLG00000031641
rosa_multiflora	Rmu_sc0006233.1_g000030
rosa_roxburghii	Rroxscaffold_1G00066840 Rroxscaffold_1G00067540
rosa_rugosa	Rorug04G0441600
rosa_samantha	Rh5AG071400 Rh5BG067900 Rh5CG080200 Rh5DG067900
rosa_wichuraiana	Rw5G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1784, 5177
AarI	CACCTGC	1 cut(s)	2816
AasI	GACNNNNNNGTC	1 cut(s)	160
Acc16I	TGCGCA	1 cut(s)	2078
Acc36I	ACCTGC	1 cut(s)	2816
Acc65I	GGTACC	1 cut(s)	3235
AccB1I	GGYRCC	2 cut(s)	634, 3235
AccB7I	CCANNNNNTGG	1 cut(s)	1820
AccII	CGCG	1 cut(s)	4617
AccIII	TCCGGA	1 cut(s)	1125
AcoI	YGGCCR	5 cut(s)	859, 3106, 3376, 4080, 4807
AcsI	RAATTY	4 cut(s)	1953, 2177, 3721, 4033
AcuI	CTGAAG	5 cut(s)	2874, 4980, 5100, 5136, 5187
AcvI	CACGTG	1 cut(s)	3536
AcyI	GRCGYC	4 cut(s)	110, 948, 2162, 2288
AdeI	CACNNNGTG	1 cut(s)	3214
AfeI	AGCGCT	1 cut(s)	4786
AflII	CTTAAG	2 cut(s)	1771, 2981
AflIII	ACRYGT	4 cut(s)	757, 3085, 3533, 4006
AhdI	GACNNNNNGTC	1 cut(s)	4264
AjiI	CACGTC	1 cut(s)	4176
AjuI	GAANNNNNNNTTGG	2 cut(s)	3266, 3298
AleI	CACNNNNGTG	1 cut(s)	732
Alw21I	GWGCWC	2 cut(s)	1581, 4585
Alw26I	GTCTC	7 cut(s)	146, 1375, 2262, 3731, 4235, 4251, 4714
Alw44I	GTGCAC	1 cut(s)	4581
AlwNI	CAGNNNCTG	3 cut(s)	2093, 2171, 3957
Aor13HI	TCCGGA	1 cut(s)	1125
Aor51HI	AGCGCT	1 cut(s)	4786
ApaI	GGGCCC	1 cut(s)	3232
ApaLI	GTGCAC	1 cut(s)	4581
ApoI	RAATTY	4 cut(s)	1953, 2177, 3721, 4033
ArsI	GACNNNNNNTTYG	2 cut(s)	3730, 3762
Asp700I	GAANNNNTTC	4 cut(s)	1956, 2247, 3600, 4140
Asp718I	GGTACC	1 cut(s)	3235
AspLEI	GCGC	3 cut(s)	99, 2079, 4787
AsuC2I	CCSGG	5 cut(s)	282, 288, 387, 587, 620
AsuII	TTCGAA	4 cut(s)	1120, 2337, 2442, 4533
AxyI	CCTNAGG	1 cut(s)	3240
BaeGI	GKGCMC	3 cut(s)	637, 3232, 4585
BaeI	ACNNNNGTAYC	2 cut(s)	4419, 4452
BalI	TGGCCA	5 cut(s)	861, 3108, 3378, 4082, 4809
BamHI	GGATCC	1 cut(s)	2545
BanI	GGYRCC	2 cut(s)	634, 3235
BanII	GRGCYC	4 cut(s)	416, 874, 3232, 4458
BbrPI	CACGTG	1 cut(s)	3536
BbsI	GAAGAC	6 cut(s)	113, 869, 2523, 4167, 4968, 4974
Bbv12I	GWGCWC	2 cut(s)	1581, 4585
BbvCI	CCTCAGC	1 cut(s)	2400
BceAI	ACGGC	6 cut(s)	97, 553, 4401, 4611, 5053, 5110
BcgI	CGANNNNNNTGC	4 cut(s)	360, 394, 2327, 2361
BciVI	GTATCC	2 cut(s)	3523, 4365
BclI	TGATCA	2 cut(s)	2596, 2791
BcnI	CCSGG	5 cut(s)	282, 288, 387, 587, 620
BcoDI	GTCTC	7 cut(s)	146, 1375, 2262, 3731, 4235, 4251, 4714
BfmI	CTRYAG	5 cut(s)	543, 2415, 2460, 3156, 5218
BfoI	RGCGCY	2 cut(s)	100, 4788
BfrI	CTTAAG	2 cut(s)	1771, 2981
BfuAI	ACCTGC	1 cut(s)	2816
BfuI	GTATCC	2 cut(s)	3523, 4365
BglII	AGATCT	1 cut(s)	695
BmcAI	AGTACT	4 cut(s)	973, 2779, 3706, 4567
BmeRI	GACNNNNNGTC	1 cut(s)	4264
BmgBI	CACGTC	1 cut(s)	4176
BmrI	ACTGGG	4 cut(s)	569, 2457, 4307, 5008
BmuI	ACTGGG	4 cut(s)	569, 2457, 4307, 5008
BoxI	GACNNNNGTC	1 cut(s)	3018
BpiI	GAAGAC	6 cut(s)	113, 869, 2523, 4167, 4968, 4974
BplI	GAGNNNNNCTC	2 cut(s)	3728, 3760
BpmI	CTGGAG	5 cut(s)	715, 1878, 2556, 3114, 4973
Bpu10I	CCTNAGC	2 cut(s)	2400, 4452
Bpu14I	TTCGAA	4 cut(s)	1120, 2337, 2442, 4533
BpuEI	CTTGAG	7 cut(s)	406, 1418, 1703, 2225, 2972, 3817, 4079
BpuMI	CCSGG	5 cut(s)	282, 288, 387, 587, 620
Bsa29I	ATCGAT	2 cut(s)	1614, 3397
BsaAI	YACGTR	1 cut(s)	3536
BsaBI	GATNNNNATC	1 cut(s)	2544
BsaHI	GRCGYC	4 cut(s)	110, 948, 2162, 2288
BsaI	GGTCTC	2 cut(s)	2262, 4714
BsaWI	WCCGGW	2 cut(s)	1125, 5024
BsaXI	ACNNNNNCTCC	2 cut(s)	4994, 5024
Bse21I	CCTNAGG	1 cut(s)	3240
Bse3DI	GCAATG	6 cut(s)	454, 537, 611, 2086, 2656, 3946
Bse8I	GATNNNNATC	1 cut(s)	2544
BseAI	TCCGGA	1 cut(s)	1125
BseCI	ATCGAT	2 cut(s)	1614, 3397
BseJI	GATNNNNATC	1 cut(s)	2544
BseMI	GCAATG	6 cut(s)	454, 537, 611, 2086, 2656, 3946
BseRI	GAGGAG	8 cut(s)	93, 96, 1171, 2020, 3359, 4623, 4783, 4938
BseSI	GKGCMC	3 cut(s)	637, 3232, 4585
BseYI	CCCAGC	1 cut(s)	4868
BsgI	GTGCAG	1 cut(s)	1377
Bsh1236I	CGCG	1 cut(s)	4617
Bsh1285I	CGRYCG	2 cut(s)	211, 868
BshNI	GGYRCC	2 cut(s)	634, 3235
BshVI	ATCGAT	2 cut(s)	1614, 3397
BsiEI	CGRYCG	2 cut(s)	211, 868
BsiHKAI	GWGCWC	2 cut(s)	1581, 4585
BslFI	GGGAC	6 cut(s)	959, 3349, 4719, 4743, 4810, 4892
BsmAI	GTCTC	7 cut(s)	146, 1375, 2262, 3731, 4235, 4251, 4714
BsmBI	CGTCTC	2 cut(s)	146, 1375
BsmFI	GGGAC	6 cut(s)	959, 3349, 4719, 4743, 4810, 4892
BsmI	GAATGC	4 cut(s)	626, 1538, 3842, 4198
Bso31I	GGTCTC	2 cut(s)	2262, 4714
Bsp119I	TTCGAA	4 cut(s)	1120, 2337, 2442, 4533
Bsp120I	GGGCCC	1 cut(s)	3228
Bsp1286I	GDGCHC	7 cut(s)	416, 637, 874, 1581, 3232, 4458, 4585
Bsp13I	TCCGGA	1 cut(s)	1125
Bsp19I	CCATGG	1 cut(s)	3252
Bsp68I	TCGCGA	1 cut(s)	4617
BspDI	ATCGAT	2 cut(s)	1614, 3397
BspEI	TCCGGA	1 cut(s)	1125
BspFNI	CGCG	1 cut(s)	4617
BspHI	TCATGA	3 cut(s)	1111, 1726, 2056
BspMAI	CTGCAG	3 cut(s)	2419, 2464, 3160
BspMI	ACCTGC	1 cut(s)	2816
BspQI	GCTCTTC	1 cut(s)	2877
BspT104I	TTCGAA	4 cut(s)	1120, 2337, 2442, 4533
BspT107I	GGYRCC	2 cut(s)	634, 3235
BspTI	CTTAAG	2 cut(s)	1771, 2981
BspTNI	GGTCTC	2 cut(s)	2262, 4714
BsrDI	GCAATG	6 cut(s)	454, 537, 611, 2086, 2656, 3946
BssNI	GRCGYC	4 cut(s)	110, 948, 2162, 2288
BssT1I	CCWWGG	5 cut(s)	488, 845, 2138, 3252, 4367
Bst6I	CTCTTC	8 cut(s)	1218, 1251, 1997, 2493, 2877, 3027, 3492, 3751
BstACI	GRCGYC	4 cut(s)	110, 948, 2162, 2288
BstAFI	CTTAAG	2 cut(s)	1771, 2981
BstAPI	GCANNNNNTGC	3 cut(s)	1976, 2975, 3860
BstBAI	YACGTR	1 cut(s)	3536
BstBI	TTCGAA	4 cut(s)	1120, 2337, 2442, 4533
BstC8I	GCNNGC	7 cut(s)	89, 900, 1486, 3389, 4084, 4619, 4941
BstDSI	CCRYGG	4 cut(s)	862, 1607, 3252, 4627
BstENI	CCTNNNNNAGG	3 cut(s)	134, 3441, 3799
BstFNI	CGCG	1 cut(s)	4617
BstH2I	RGCGCY	2 cut(s)	100, 4788
BstHHI	GCGC	3 cut(s)	99, 2079, 4787
BstMAI	GTCTC	7 cut(s)	146, 1375, 2262, 3731, 4235, 4251, 4714
BstMCI	CGRYCG	2 cut(s)	211, 868
BstNSI	RCATGY	4 cut(s)	761, 3089, 4010, 4047
BstPAI	GACNNNNGTC	1 cut(s)	3018
BstSFI	CTRYAG	5 cut(s)	543, 2415, 2460, 3156, 5218
BstSLI	GKGCMC	3 cut(s)	637, 3232, 4585
BstUI	CGCG	1 cut(s)	4617
BstV2I	GAAGAC	6 cut(s)	113, 869, 2523, 4167, 4968, 4974
BstX2I	RGATCY	4 cut(s)	695, 2144, 2545, 5019
BstXI	CCANNNNNNTGG	1 cut(s)	4864
BstYI	RGATCY	4 cut(s)	695, 2144, 2545, 5019
Bsu15I	ATCGAT	2 cut(s)	1614, 3397
Bsu36I	CCTNAGG	1 cut(s)	3240
BsuI	GTATCC	2 cut(s)	3523, 4365
BsuTUI	ATCGAT	2 cut(s)	1614, 3397
BtgI	CCRYGG	4 cut(s)	862, 1607, 3252, 4627
BtgZI	GCGATG	1 cut(s)	5145
BtrI	CACGTC	1 cut(s)	4176
BtsI	GCAGTG	4 cut(s)	339, 909, 2759, 3436
BtuMI	TCGCGA	1 cut(s)	4617
BveI	ACCTGC	1 cut(s)	2816
Cac8I	GCNNGC	7 cut(s)	89, 900, 1486, 3389, 4084, 4619, 4941
CaiI	CAGNNNCTG	3 cut(s)	2093, 2171, 3957
CciI	TCATGA	3 cut(s)	1111, 1726, 2056
CfoI	GCGC	3 cut(s)	99, 2079, 4787
ClaI	ATCGAT	2 cut(s)	1614, 3397
CspCI	CAANNNNNGTGG	2 cut(s)	4630, 4665
DraI	TTTAAA	1 cut(s)	3720
DraIII	CACNNNGTG	1 cut(s)	3214
DrdI	GACNNNNNNGTC	1 cut(s)	160
DriI	GACNNNNNGTC	1 cut(s)	4264
DseDI	GACNNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	5 cut(s)	859, 3106, 3376, 4080, 4807
Eam1104I	CTCTTC	8 cut(s)	1218, 1251, 1997, 2493, 2877, 3027, 3492, 3751
Eam1105I	GACNNNNNGTC	1 cut(s)	4264
EarI	CTCTTC	8 cut(s)	1218, 1251, 1997, 2493, 2877, 3027, 3492, 3751
EciI	GGCGGA	3 cut(s)	194, 3014, 4732
Eco130I	CCWWGG	5 cut(s)	488, 845, 2138, 3252, 4367
Eco147I	AGGCCT	2 cut(s)	140, 4100
Eco24I	GRGCYC	4 cut(s)	416, 874, 3232, 4458
Eco31I	GGTCTC	2 cut(s)	2262, 4714
Eco32I	GATATC	1 cut(s)	4051
Eco47III	AGCGCT	1 cut(s)	4786
Eco57I	CTGAAG	5 cut(s)	2874, 4980, 5100, 5136, 5187
Eco72I	CACGTG	1 cut(s)	3536
Eco81I	CCTNAGG	1 cut(s)	3240
EcoNI	CCTNNNNNAGG	3 cut(s)	134, 3441, 3799
EcoO109I	RGGNCCY	6 cut(s)	2386, 3228, 3229, 3257, 3363, 4706
EcoRV	GATATC	1 cut(s)	4051
EcoT14I	CCWWGG	5 cut(s)	488, 845, 2138, 3252, 4367
EcoT22I	ATGCAT	4 cut(s)	628, 1540, 1897, 2104
EcoT38I	GRGCYC	4 cut(s)	416, 874, 3232, 4458
ErhI	CCWWGG	5 cut(s)	488, 845, 2138, 3252, 4367
Esp3I	CGTCTC	2 cut(s)	146, 1375
FalI	AAGNNNNNCTT	4 cut(s)	1380, 1412, 2874, 2906
FaqI	GGGAC	6 cut(s)	959, 3349, 4719, 4743, 4810, 4892
FauNDI	CATATG	2 cut(s)	1891, 4905
FbaI	TGATCA	2 cut(s)	2596, 2791
FriOI	GRGCYC	4 cut(s)	416, 874, 3232, 4458
FspI	TGCGCA	1 cut(s)	2078
GlaI	GCGC	3 cut(s)	98, 2078, 4786
GsaI	CCCAGC	1 cut(s)	4872
GsuI	CTGGAG	5 cut(s)	715, 1878, 2556, 3114, 4973
HaeII	RGCGCY	2 cut(s)	100, 4788
HhaI	GCGC	3 cut(s)	99, 2079, 4787
Hin1I	GRCGYC	4 cut(s)	110, 948, 2162, 2288
Hin6I	GCGC	3 cut(s)	97, 2077, 4785
HinP1I	GCGC	3 cut(s)	97, 2077, 4785
HincII	GTYRAC	2 cut(s)	2160, 4230
HindII	GTYRAC	2 cut(s)	2160, 4230
HindIII	AAGCTT	1 cut(s)	1719
HpaI	GTTAAC	1 cut(s)	4230
Hpy166II	GTNNAC	9 cut(s)	986, 1865, 2160, 2366, 3185, 3311, 4230, 4583, 4742
Hpy8I	GTNNAC	9 cut(s)	986, 1865, 2160, 2366, 3185, 3311, 4230, 4583, 4742
Hpy99I	CGWCG	3 cut(s)	77, 166, 4755
HpyCH4IV	ACGT	8 cut(s)	155, 1282, 2535, 3307, 3535, 4175, 4600, 4753
HpySE526I	ACGT	8 cut(s)	155, 1282, 2535, 3307, 3535, 4175, 4600, 4753
Hsp92I	GRCGYC	4 cut(s)	110, 948, 2162, 2288
HspAI	GCGC	3 cut(s)	97, 2077, 4785
Kpn2I	TCCGGA	1 cut(s)	1125
KpnI	GGTACC	1 cut(s)	3239
Ksp22I	TGATCA	2 cut(s)	2596, 2791
KspAI	GTTAAC	1 cut(s)	4230
LguI	GCTCTTC	1 cut(s)	2877
MaeII	ACGT	8 cut(s)	155, 1282, 2535, 3307, 3535, 4175, 4600, 4753
MaeIII	GTNAC	7 cut(s)	507, 882, 904, 2611, 3088, 3926, 4463
MfeI	CAATTG	2 cut(s)	789, 3281
MflI	RGATCY	4 cut(s)	695, 2144, 2545, 5019
MhlI	GDGCHC	7 cut(s)	416, 637, 874, 1581, 3232, 4458, 4585
MlsI	TGGCCA	5 cut(s)	861, 3108, 3378, 4082, 4809
MluNI	TGGCCA	5 cut(s)	861, 3108, 3378, 4082, 4809
MlyI	GAGTC	5 cut(s)	176, 1824, 2513, 3935, 4964
MmeI	TCCRAC	4 cut(s)	144, 168, 360, 4456
Mox20I	TGGCCA	5 cut(s)	861, 3108, 3378, 4082, 4809
Mph1103I	ATGCAT	4 cut(s)	628, 1540, 1897, 2104
MroI	TCCGGA	1 cut(s)	1125
MroXI	GAANNNNTTC	4 cut(s)	1956, 2247, 3600, 4140
MscI	TGGCCA	5 cut(s)	861, 3108, 3378, 4082, 4809
MslI	CAYNNNNRTG	5 cut(s)	732, 777, 1731, 1894, 4511
Msp20I	TGGCCA	5 cut(s)	861, 3108, 3378, 4082, 4809
MspA1I	CMGCKG	3 cut(s)	121, 2093, 4391
MspCI	CTTAAG	2 cut(s)	1771, 2981
MunI	CAATTG	2 cut(s)	789, 3281
Mva1269I	GAATGC	4 cut(s)	626, 1538, 3842, 4198
MvnI	CGCG	1 cut(s)	4617
NciI	CCSGG	5 cut(s)	282, 288, 387, 587, 620
NcoI	CCATGG	1 cut(s)	3252
NdeI	CATATG	2 cut(s)	1891, 4905
NmuCI	GTSAC	5 cut(s)	507, 882, 904, 2611, 4463
NruI	TCGCGA	1 cut(s)	4617
NsbI	TGCGCA	1 cut(s)	2078
NsiI	ATGCAT	4 cut(s)	628, 1540, 1897, 2104
NspI	RCATGY	4 cut(s)	761, 3089, 4010, 4047
NspV	TTCGAA	4 cut(s)	1120, 2337, 2442, 4533
OliI	CACNNNNGTG	1 cut(s)	732
PagI	TCATGA	3 cut(s)	1111, 1726, 2056
PaqCI	CACCTGC	1 cut(s)	2816
PceI	AGGCCT	2 cut(s)	140, 4100
PciI	ACATGT	3 cut(s)	757, 3085, 4006
PciSI	GCTCTTC	1 cut(s)	2877
PcsI	WCGNNNNNNNCGW	1 cut(s)	4750
PctI	GAATGC	4 cut(s)	626, 1538, 3842, 4198
PdmI	GAANNNNTTC	4 cut(s)	1956, 2247, 3600, 4140
PflMI	CCANNNNNTGG	1 cut(s)	1820
PfoI	TCCNGGA	1 cut(s)	1855
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	5 cut(s)	175, 1824, 2513, 3935, 4963
PmaCI	CACGTG	1 cut(s)	3536
PmlI	CACGTG	1 cut(s)	3536
PpsI	GAGTC	5 cut(s)	175, 1824, 2513, 3935, 4963
Ppu21I	YACGTR	1 cut(s)	3536
PpuMI	RGGWCCY	4 cut(s)	2386, 3257, 3363, 4706
PscI	ACATGT	3 cut(s)	757, 3085, 4006
PshAI	GACNNNNGTC	1 cut(s)	3018
PsiI	TTATAA	2 cut(s)	1784, 5177
Psp5II	RGGWCCY	4 cut(s)	2386, 3257, 3363, 4706
PspCI	CACGTG	1 cut(s)	3536
PspFI	CCCAGC	1 cut(s)	4868
PspOMI	GGGCCC	1 cut(s)	3228
PspPPI	RGGWCCY	4 cut(s)	2386, 3257, 3363, 4706
PsrI	GAACNNNNNNTAC	2 cut(s)	3996, 4028
PstI	CTGCAG	3 cut(s)	2419, 2464, 3160
PstNI	CAGNNNCTG	3 cut(s)	2093, 2171, 3957
PsuI	RGATCY	4 cut(s)	695, 2144, 2545, 5019
PvuI	CGATCG	1 cut(s)	211
PvuII	CAGCTG	3 cut(s)	121, 2093, 4391
RruI	TCGCGA	1 cut(s)	4617
RseI	CAYNNNNRTG	5 cut(s)	732, 777, 1731, 1894, 4511
SapI	GCTCTTC	1 cut(s)	2877
ScaI	AGTACT	4 cut(s)	973, 2779, 3706, 4567
SchI	GAGTC	5 cut(s)	176, 1824, 2513, 3935, 4964
SduI	GDGCHC	7 cut(s)	416, 637, 874, 1581, 3232, 4458, 4585
SfcI	CTRYAG	5 cut(s)	543, 2415, 2460, 3156, 5218
SfuI	TTCGAA	4 cut(s)	1120, 2337, 2442, 4533
SmiMI	CAYNNNNRTG	5 cut(s)	732, 777, 1731, 1894, 4511
SmlI	CTYRAG	9 cut(s)	421, 1397, 1682, 1771, 2204, 2951, 2981, 3796, 4094
SmoI	CTYRAG	9 cut(s)	421, 1397, 1682, 1771, 2204, 2951, 2981, 3796, 4094
SseBI	AGGCCT	2 cut(s)	140, 4100
StuI	AGGCCT	2 cut(s)	140, 4100
StyI	CCWWGG	5 cut(s)	488, 845, 2138, 3252, 4367
TaiI	ACGT	8 cut(s)	158, 1285, 2538, 3310, 3538, 4178, 4603, 4756
TatI	WGTACW	5 cut(s)	971, 2777, 3704, 4360, 4565
TauI	GCSGC	2 cut(s)	3794, 5043
TseFI	GTSAC	5 cut(s)	507, 882, 904, 2611, 4463
Tsp45I	GTSAC	5 cut(s)	507, 882, 904, 2611, 4463
TspGWI	ACGGA	3 cut(s)	90, 539, 1596
Van91I	CCANNNNNTGG	1 cut(s)	1820
Vha464I	CTTAAG	2 cut(s)	1771, 2981
VneI	GTGCAC	1 cut(s)	4581
XagI	CCTNNNNNAGG	3 cut(s)	134, 3441, 3799
XapI	RAATTY	4 cut(s)	1953, 2177, 3721, 4033
XbaI	TCTAGA	1 cut(s)	4339
XceI	RCATGY	4 cut(s)	761, 3089, 4010, 4047
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	4 cut(s)	1956, 2247, 3600, 4140
ZrmI	AGTACT	4 cut(s)	973, 2779, 3706, 4567
Zsp2I	ATGCAT	4 cut(s)	628, 1540, 1897, 2104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.