HB1, ASXL, restriction endonuclease HTH domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28420 |
| fragaria_vesca | FvH4_3g08620 |
| malus_domestica | MD05G1310200.v1.1 MD10G1289100.v1.1 |
| prunus_persica | Prupe.4G052600_v2.0.a1 |
| pyrus_communis | pycom05g28660 pycom10g24170 |
| rosa_chinensis | RchiOBHm_Chr5g0009221 |
| rosa_laevigata | RLG00000031635 RLG00000031641 |
| rosa_multiflora | Rmu_sc0006233.1_g000030 |
| rosa_roxburghii | Rroxscaffold_1G00066840 Rroxscaffold_1G00067540 |
| rosa_rugosa | Rorug04G0441600 |
| rosa_samantha | Rh5AG071400 Rh5BG067900 Rh5CG080200 Rh5DG067900 |
| rosa_wichuraiana | Rw5G006670 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1808 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 166, 4529 |
| AatII | GACGTC | 1 cut(s) | 3569 |
| AccB1I | GGYRCC | 2 cut(s) | 298, 4358 |
| AccB7I | CCANNNNNTGG | 6 cut(s) | 643, 794, 935, 2747, 5050, 5103 |
| AccBSI | CCGCTC | 1 cut(s) | 661 |
| AccII | CGCG | 4 cut(s) | 883, 2388, 3352, 4692 |
| AccIII | TCCGGA | 1 cut(s) | 1143 |
| AcoI | YGGCCR | 1 cut(s) | 1970 |
| AcsI | RAATTY | 5 cut(s) | 65, 2201, 2454, 3778, 4045 |
| AcuI | CTGAAG | 6 cut(s) | 2337, 3561, 4236, 4565, 5052, 5172 |
| AcvI | CACGTG | 1 cut(s) | 3581 |
| AcyI | GRCGYC | 1 cut(s) | 3566 |
| AdeI | CACNNNGTG | 1 cut(s) | 3236 |
| AfaI | GTAC | 6 cut(s) | 2035, 2391, 3159, 3763, 4123, 4896 |
| AflII | CTTAAG | 1 cut(s) | 3017 |
| AflIII | ACRYGT | 1 cut(s) | 3578 |
| AgeI | ACCGGT | 2 cut(s) | 2178, 4780 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4321 |
| AjiI | CACGTC | 1 cut(s) | 4664 |
| Alw21I | GWGCWC | 3 cut(s) | 601, 4648, 4816 |
| Alw44I | GTGCAC | 2 cut(s) | 4644, 4812 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 2117, 3200, 5270 |
| Ama87I | CYCGRG | 4 cut(s) | 137, 311, 1706, 4927 |
| Aor13HI | TCCGGA | 1 cut(s) | 1143 |
| ApaLI | GTGCAC | 2 cut(s) | 4644, 4812 |
| ApoI | RAATTY | 5 cut(s) | 65, 2201, 2454, 3778, 4045 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2543, 2575 |
| AseI | ATTAAT | 2 cut(s) | 1056, 4160 |
| AsiGI | ACCGGT | 2 cut(s) | 2178, 4780 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1374, 4197, 4272, 4611 |
| AspLEI | GCGC | 3 cut(s) | 105, 3354, 4692 |
| AspS9I | GGNCC | 9 cut(s) | 272, 548, 797, 2012, 2293, 3302, 3408, 3680, 4879 |
| AsuHPI | GGTGA | 7 cut(s) | 465, 777, 950, 2876, 4625, 4952, 4997 |
| AsuII | TTCGAA | 1 cut(s) | 2361 |
| AvaI | CYCGRG | 4 cut(s) | 137, 311, 1706, 4927 |
| AvaII | GGWCC | 5 cut(s) | 272, 797, 2293, 3302, 3408 |
| BaeGI | GKGCMC | 3 cut(s) | 303, 4648, 4816 |
| BalI | TGGCCA | 1 cut(s) | 1972 |
| BamHI | GGATCC | 2 cut(s) | 1140, 2410 |
| BanI | GGYRCC | 2 cut(s) | 298, 4358 |
| BanII | GRGCYC | 3 cut(s) | 700, 3286, 4515 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 4260, 4292 |
| BauI | CACGAG | 1 cut(s) | 5108 |
| BbrPI | CACGTG | 1 cut(s) | 3581 |
| BbsI | GAAGAC | 5 cut(s) | 119, 884, 2562, 4224, 5040 |
| Bbv12I | GWGCWC | 3 cut(s) | 601, 4648, 4816 |
| BceAI | ACGGC | 2 cut(s) | 1615, 4289 |
| BciVI | GTATCC | 1 cut(s) | 4422 |
| BfmI | CTRYAG | 8 cut(s) | 603, 2439, 2484, 3201, 4277, 4443, 5271, 5287 |
| BfoI | RGCGCY | 1 cut(s) | 106 |
| BfrI | CTTAAG | 1 cut(s) | 3017 |
| BfuI | GTATCC | 1 cut(s) | 4422 |
| BlpI | GCTNAGC | 1 cut(s) | 4509 |
| BmcAI | AGTACT | 1 cut(s) | 3763 |
| Bme18I | GGWCC | 5 cut(s) | 272, 797, 2293, 3302, 3408 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4321 |
| BmeT110I | CYCGRG | 4 cut(s) | 137, 311, 1706, 4927 |
| BmgBI | CACGTC | 1 cut(s) | 4664 |
| BmgT120I | GGNCC | 9 cut(s) | 272, 548, 797, 2012, 2293, 3302, 3408, 3680, 4879 |
| BmrI | ACTGGG | 3 cut(s) | 472, 2735, 5080 |
| BmuI | ACTGGG | 3 cut(s) | 472, 2735, 5080 |
| BpiI | GAAGAC | 5 cut(s) | 119, 884, 2562, 4224, 5040 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 3785, 3817 |
| BpmI | CTGGAG | 3 cut(s) | 715, 1175, 3177 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 4509 |
| Bpu14I | TTCGAA | 1 cut(s) | 2361 |
| Bsa29I | ATCGAT | 2 cut(s) | 3442, 4481 |
| BsaAI | YACGTR | 1 cut(s) | 3581 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1139, 2583 |
| BsaHI | GRCGYC | 1 cut(s) | 3566 |
| BsaI | GGTCTC | 1 cut(s) | 152 |
| BsaWI | WCCGGW | 4 cut(s) | 1021, 1143, 2178, 4780 |
| Bse118I | RCCGGY | 2 cut(s) | 2178, 4780 |
| Bse3DI | GCAATG | 4 cut(s) | 501, 2110, 2692, 3481 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1139, 2583 |
| BseAI | TCCGGA | 1 cut(s) | 1143 |
| BseCI | ATCGAT | 2 cut(s) | 3442, 4481 |
| BseJI | GATNNNNATC | 2 cut(s) | 1139, 2583 |
| BseMI | GCAATG | 4 cut(s) | 501, 2110, 2692, 3481 |
| BseRI | GAGGAG | 5 cut(s) | 469, 472, 1189, 1661, 4855 |
| BseSI | GKGCMC | 3 cut(s) | 303, 4648, 4816 |
| BsgI | GTGCAG | 3 cut(s) | 1413, 3696, 3964 |
| Bsh1236I | CGCG | 4 cut(s) | 883, 2388, 3352, 4692 |
| Bsh1285I | CGRYCG | 1 cut(s) | 574 |
| BshNI | GGYRCC | 2 cut(s) | 298, 4358 |
| BshTI | ACCGGT | 2 cut(s) | 2178, 4780 |
| BshVI | ATCGAT | 2 cut(s) | 3442, 4481 |
| BsiEI | CGRYCG | 1 cut(s) | 574 |
| BsiHKAI | GWGCWC | 3 cut(s) | 601, 4648, 4816 |
| BsiHKCI | CYCGRG | 4 cut(s) | 137, 311, 1706, 4927 |
| BsiSI | CCGG | 7 cut(s) | 381, 1022, 1144, 1984, 2004, 2179, 4781 |
| BsiWI | CGTACG | 2 cut(s) | 2389, 4894 |
| BslFI | GGGAC | 7 cut(s) | 99, 977, 2256, 2306, 3394, 4882, 5104 |
| BsmBI | CGTCTC | 4 cut(s) | 1222, 1393, 2544, 3573 |
| BsmFI | GGGAC | 7 cut(s) | 99, 977, 2256, 2306, 3394, 4882, 5104 |
| BsmI | GAATGC | 4 cut(s) | 1562, 1583, 3899, 4255 |
| Bso31I | GGTCTC | 1 cut(s) | 152 |
| BsoBI | CYCGRG | 4 cut(s) | 137, 311, 1706, 4927 |
| Bsp119I | TTCGAA | 1 cut(s) | 2361 |
| Bsp1286I | GDGCHC | 7 cut(s) | 303, 601, 700, 3286, 4515, 4648, 4816 |
| Bsp13I | TCCGGA | 1 cut(s) | 1143 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 4509 |
| Bsp19I | CCATGG | 3 cut(s) | 862, 3223, 3297 |
| BspDI | ATCGAT | 2 cut(s) | 3442, 4481 |
| BspEI | TCCGGA | 1 cut(s) | 1143 |
| BspFNI | CGCG | 4 cut(s) | 883, 2388, 3352, 4692 |
| BspHI | TCATGA | 4 cut(s) | 40, 1129, 1750, 4465 |
| BspMAI | CTGCAG | 5 cut(s) | 2443, 2488, 3205, 4447, 5275 |
| BspQI | GCTCTTC | 3 cut(s) | 1365, 2913, 4203 |
| BspT104I | TTCGAA | 1 cut(s) | 2361 |
| BspT107I | GGYRCC | 2 cut(s) | 298, 4358 |
| BspTI | CTTAAG | 1 cut(s) | 3017 |
| BspTNI | GGTCTC | 1 cut(s) | 152 |
| BsrBI | CCGCTC | 1 cut(s) | 661 |
| BsrDI | GCAATG | 4 cut(s) | 501, 2110, 2692, 3481 |
| BsrFI | RCCGGY | 2 cut(s) | 2178, 4780 |
| BssAI | RCCGGY | 2 cut(s) | 2178, 4780 |
| BssNI | GRCGYC | 1 cut(s) | 3566 |
| BssSI | CACGAG | 1 cut(s) | 5108 |
| BssT1I | CCWWGG | 8 cut(s) | 153, 692, 862, 3223, 3297, 4100, 4134, 4424 |
| Bst2BI | CACGAG | 1 cut(s) | 5108 |
| BstACI | GRCGYC | 1 cut(s) | 3566 |
| BstAFI | CTTAAG | 1 cut(s) | 3017 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 2000, 2492 |
| BstBAI | YACGTR | 1 cut(s) | 3581 |
| BstBI | TTCGAA | 1 cut(s) | 2361 |
| BstDSI | CCRYGG | 4 cut(s) | 862, 1631, 3223, 3297 |
| BstEII | GGTNACC | 1 cut(s) | 2938 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 3486, 3856 |
| BstFNI | CGCG | 4 cut(s) | 883, 2388, 3352, 4692 |
| BstH2I | RGCGCY | 1 cut(s) | 106 |
| BstHHI | GCGC | 3 cut(s) | 105, 3354, 4692 |
| BstMCI | CGRYCG | 1 cut(s) | 574 |
| BstNSI | RCATGY | 2 cut(s) | 404, 4067 |
| BstPI | GGTNACC | 1 cut(s) | 2938 |
| BstSFI | CTRYAG | 8 cut(s) | 603, 2439, 2484, 3201, 4277, 4443, 5271, 5287 |
| BstSLI | GKGCMC | 3 cut(s) | 303, 4648, 4816 |
| BstUI | CGCG | 4 cut(s) | 883, 2388, 3352, 4692 |
| BstV2I | GAAGAC | 5 cut(s) | 119, 884, 2562, 4224, 5040 |
| BstX2I | RGATCY | 3 cut(s) | 1140, 1779, 2410 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 869 |
| BstYI | RGATCY | 3 cut(s) | 1140, 1779, 2410 |
| Bsu15I | ATCGAT | 2 cut(s) | 3442, 4481 |
| BsuI | GTATCC | 1 cut(s) | 4422 |
| BsuTUI | ATCGAT | 2 cut(s) | 3442, 4481 |
| BtgI | CCRYGG | 4 cut(s) | 862, 1631, 3223, 3297 |
| BtrI | CACGTC | 1 cut(s) | 4664 |
| BtsI | GCAGTG | 5 cut(s) | 924, 1401, 3198, 4440, 5055 |
| CaiI | CAGNNNCTG | 3 cut(s) | 2117, 3200, 5270 |
| CciI | TCATGA | 4 cut(s) | 40, 1129, 1750, 4465 |
| CfoI | GCGC | 3 cut(s) | 105, 3354, 4692 |
| Cfr10I | RCCGGY | 2 cut(s) | 2178, 4780 |
| Cfr13I | GGNCC | 9 cut(s) | 272, 548, 797, 2012, 2293, 3302, 3408, 3680, 4879 |
| ClaI | ATCGAT | 2 cut(s) | 3442, 4481 |
| CseI | GACGC | 2 cut(s) | 1410, 2912 |
| Csp6I | GTAC | 6 cut(s) | 2034, 2390, 3158, 3762, 4122, 4895 |
| CspAI | ACCGGT | 2 cut(s) | 2178, 4780 |
| CviQI | GTAC | 6 cut(s) | 2034, 2390, 3158, 3762, 4122, 4895 |
| DraIII | CACNNNGTG | 1 cut(s) | 3236 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 166, 4529 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4321 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 166, 4529 |
| EaeI | YGGCCR | 1 cut(s) | 1970 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4321 |
| EciI | GGCGGA | 1 cut(s) | 200 |
| Eco130I | CCWWGG | 8 cut(s) | 153, 692, 862, 3223, 3297, 4100, 4134, 4424 |
| Eco147I | AGGCCT | 1 cut(s) | 3548 |
| Eco24I | GRGCYC | 3 cut(s) | 700, 3286, 4515 |
| Eco31I | GGTCTC | 1 cut(s) | 152 |
| Eco47I | GGWCC | 5 cut(s) | 272, 797, 2293, 3302, 3408 |
| Eco57I | CTGAAG | 6 cut(s) | 2337, 3561, 4236, 4565, 5052, 5172 |
| Eco72I | CACGTG | 1 cut(s) | 3581 |
| Eco88I | CYCGRG | 4 cut(s) | 137, 311, 1706, 4927 |
| Eco91I | GGTNACC | 1 cut(s) | 2938 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 3486, 3856 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2293, 3302, 3408 |
| EcoO65I | GGTNACC | 1 cut(s) | 2938 |
| EcoRI | GAATTC | 1 cut(s) | 3778 |
| EcoT14I | CCWWGG | 8 cut(s) | 153, 692, 862, 3223, 3297, 4100, 4134, 4424 |
| EcoT22I | ATGCAT | 7 cut(s) | 751, 1564, 1921, 2128, 3340, 3403, 4255 |
| EcoT38I | GRGCYC | 3 cut(s) | 700, 3286, 4515 |
| ErhI | CCWWGG | 8 cut(s) | 153, 692, 862, 3223, 3297, 4100, 4134, 4424 |
| Esp3I | CGTCTC | 4 cut(s) | 1222, 1393, 2544, 3573 |
| FaqI | GGGAC | 7 cut(s) | 99, 977, 2256, 2306, 3394, 4882, 5104 |
| FauI | CCCGC | 1 cut(s) | 621 |
| FauNDI | CATATG | 5 cut(s) | 751, 1915, 3334, 4113, 4977 |
| FriOI | GRGCYC | 3 cut(s) | 700, 3286, 4515 |
| GlaI | GCGC | 3 cut(s) | 104, 3353, 4691 |
| GsuI | CTGGAG | 3 cut(s) | 715, 1175, 3177 |
| HaeII | RGCGCY | 1 cut(s) | 106 |
| HapII | CCGG | 7 cut(s) | 381, 1022, 1144, 1984, 2004, 2179, 4781 |
| HgaI | GACGC | 2 cut(s) | 1410, 2912 |
| HhaI | GCGC | 3 cut(s) | 105, 3354, 4692 |
| Hin1I | GRCGYC | 1 cut(s) | 3566 |
| Hin6I | GCGC | 3 cut(s) | 103, 3352, 4690 |
| HinP1I | GCGC | 3 cut(s) | 103, 3352, 4690 |
| HincII | GTYRAC | 1 cut(s) | 2184 |
| HindII | GTYRAC | 1 cut(s) | 2184 |
| HindIII | AAGCTT | 4 cut(s) | 144, 1743, 2319, 2354 |
| HpaII | CCGG | 7 cut(s) | 381, 1022, 1144, 1984, 2004, 2179, 4781 |
| HphI | GGTGA | 7 cut(s) | 465, 777, 950, 2876, 4625, 4952, 4997 |
| Hpy166II | GTNNAC | 6 cut(s) | 1889, 2184, 3230, 4646, 4814, 5117 |
| Hpy8I | GTNNAC | 6 cut(s) | 1889, 2184, 3230, 4646, 4814, 5117 |
| Hpy99I | CGWCG | 3 cut(s) | 172, 4227, 4345 |
| HpyCH4IV | ACGT | 5 cut(s) | 1300, 3566, 3580, 4663, 4893 |
| HpySE526I | ACGT | 5 cut(s) | 1300, 3566, 3580, 4663, 4893 |
| Hsp92I | GRCGYC | 1 cut(s) | 3566 |
| HspAI | GCGC | 3 cut(s) | 103, 3352, 4690 |
| Kpn2I | TCCGGA | 1 cut(s) | 1143 |
| LguI | GCTCTTC | 3 cut(s) | 1365, 2913, 4203 |
| MaeII | ACGT | 5 cut(s) | 1300, 3566, 3580, 4663, 4893 |
| MaeIII | GTNAC | 5 cut(s) | 239, 471, 1658, 2938, 3983 |
| MbiI | CCGCTC | 1 cut(s) | 661 |
| MfeI | CAATTG | 2 cut(s) | 521, 789 |
| MflI | RGATCY | 3 cut(s) | 1140, 1779, 2410 |
| MhlI | GDGCHC | 7 cut(s) | 303, 601, 700, 3286, 4515, 4648, 4816 |
| MlsI | TGGCCA | 1 cut(s) | 1972 |
| MluNI | TGGCCA | 1 cut(s) | 1972 |
| MmeI | TCCRAC | 6 cut(s) | 53, 150, 174, 808, 3503, 4074 |
| Mox20I | TGGCCA | 1 cut(s) | 1972 |
| Mph1103I | ATGCAT | 7 cut(s) | 751, 1564, 1921, 2128, 3340, 3403, 4255 |
| MroI | TCCGGA | 1 cut(s) | 1143 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1374, 4197, 4272, 4611 |
| MscI | TGGCCA | 1 cut(s) | 1972 |
| MslI | CAYNNNNRTG | 5 cut(s) | 867, 873, 1221, 1755, 1918 |
| Msp20I | TGGCCA | 1 cut(s) | 1972 |
| MspA1I | CMGCKG | 4 cut(s) | 289, 2117, 4448, 5100 |
| MspCI | CTTAAG | 1 cut(s) | 3017 |
| MspI | CCGG | 7 cut(s) | 381, 1022, 1144, 1984, 2004, 2179, 4781 |
| MunI | CAATTG | 2 cut(s) | 521, 789 |
| Mva1269I | GAATGC | 4 cut(s) | 1562, 1583, 3899, 4255 |
| MvnI | CGCG | 4 cut(s) | 883, 2388, 3352, 4692 |
| NcoI | CCATGG | 3 cut(s) | 862, 3223, 3297 |
| NdeI | CATATG | 5 cut(s) | 751, 1915, 3334, 4113, 4977 |
| NmeAIII | GCCGAG | 2 cut(s) | 537, 2449 |
| NmuCI | GTSAC | 2 cut(s) | 239, 471 |
| NsiI | ATGCAT | 7 cut(s) | 751, 1564, 1921, 2128, 3340, 3403, 4255 |
| NspI | RCATGY | 2 cut(s) | 404, 4067 |
| NspV | TTCGAA | 1 cut(s) | 2361 |
| PaeI | GCATGC | 1 cut(s) | 404 |
| PaeR7I | CTCGAG | 2 cut(s) | 137, 1706 |
| PagI | TCATGA | 4 cut(s) | 40, 1129, 1750, 4465 |
| PceI | AGGCCT | 1 cut(s) | 3548 |
| PciSI | GCTCTTC | 3 cut(s) | 1365, 2913, 4203 |
| PctI | GAATGC | 4 cut(s) | 1562, 1583, 3899, 4255 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1374, 4197, 4272, 4611 |
| Pfl23II | CGTACG | 2 cut(s) | 2389, 4894 |
| PflMI | CCANNNNNTGG | 6 cut(s) | 643, 794, 935, 2747, 5050, 5103 |
| PfoI | TCCNGGA | 2 cut(s) | 425, 2188 |
| PinAI | ACCGGT | 2 cut(s) | 2178, 4780 |
| Ple19I | CGATCG | 1 cut(s) | 574 |
| PmaCI | CACGTG | 1 cut(s) | 3581 |
| PmlI | CACGTG | 1 cut(s) | 3581 |
| Ppu21I | YACGTR | 1 cut(s) | 3581 |
| PpuMI | RGGWCCY | 3 cut(s) | 2293, 3302, 3408 |
| PshBI | ATTAAT | 2 cut(s) | 1056, 4160 |
| PsiI | TTATAA | 1 cut(s) | 1808 |
| Psp5II | RGGWCCY | 3 cut(s) | 2293, 3302, 3408 |
| PspCI | CACGTG | 1 cut(s) | 3581 |
| PspEI | GGTNACC | 1 cut(s) | 2938 |
| PspLI | CGTACG | 2 cut(s) | 2389, 4894 |
| PspPI | GGNCC | 9 cut(s) | 272, 548, 797, 2012, 2293, 3302, 3408, 3680, 4879 |
| PspPPI | RGGWCCY | 3 cut(s) | 2293, 3302, 3408 |
| PstI | CTGCAG | 5 cut(s) | 2443, 2488, 3205, 4447, 5275 |
| PstNI | CAGNNNCTG | 3 cut(s) | 2117, 3200, 5270 |
| PsuI | RGATCY | 3 cut(s) | 1140, 1779, 2410 |
| PvuI | CGATCG | 1 cut(s) | 574 |
| PvuII | CAGCTG | 2 cut(s) | 2117, 4448 |
| RsaI | GTAC | 6 cut(s) | 2035, 2391, 3159, 3763, 4123, 4896 |
| RsaNI | GTAC | 6 cut(s) | 2034, 2390, 3158, 3762, 4122, 4895 |
| RseI | CAYNNNNRTG | 5 cut(s) | 867, 873, 1221, 1755, 1918 |
| SapI | GCTCTTC | 3 cut(s) | 1365, 2913, 4203 |
| Sau96I | GGNCC | 9 cut(s) | 272, 548, 797, 2012, 2293, 3302, 3408, 3680, 4879 |
| ScaI | AGTACT | 1 cut(s) | 3763 |
| SduI | GDGCHC | 7 cut(s) | 303, 601, 700, 3286, 4515, 4648, 4816 |
| SfcI | CTRYAG | 8 cut(s) | 603, 2439, 2484, 3201, 4277, 4443, 5271, 5287 |
| Sfr274I | CTCGAG | 2 cut(s) | 137, 1706 |
| SfuI | TTCGAA | 1 cut(s) | 2361 |
| SinI | GGWCC | 5 cut(s) | 272, 797, 2293, 3302, 3408 |
| SlaI | CTCGAG | 2 cut(s) | 137, 1706 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 867, 873, 1221, 1755, 1918 |
| SphI | GCATGC | 1 cut(s) | 404 |
| SseBI | AGGCCT | 1 cut(s) | 3548 |
| SspI | AATATT | 4 cut(s) | 1654, 1980, 2900, 3181 |
| StuI | AGGCCT | 1 cut(s) | 3548 |
| StyI | CCWWGG | 8 cut(s) | 153, 692, 862, 3223, 3297, 4100, 4134, 4424 |
| TaiI | ACGT | 5 cut(s) | 1303, 3569, 3583, 4666, 4896 |
| TaqI | TCGA | 9 cut(s) | 138, 482, 570, 1707, 2361, 3442, 3747, 4225, 4481 |
| TaqII | GACCGA | 1 cut(s) | 729 |
| TatI | WGTACW | 2 cut(s) | 3761, 4121 |
| TauI | GCSGC | 4 cut(s) | 583, 664, 764, 4884 |
| TseFI | GTSAC | 2 cut(s) | 239, 471 |
| Tsp45I | GTSAC | 2 cut(s) | 239, 471 |
| TspGWI | ACGGA | 6 cut(s) | 1588, 2461, 2966, 4280, 4358, 4533 |
| Van91I | CCANNNNNTGG | 6 cut(s) | 643, 794, 935, 2747, 5050, 5103 |
| Vha464I | CTTAAG | 1 cut(s) | 3017 |
| VneI | GTGCAC | 2 cut(s) | 4644, 4812 |
| VpaK11BI | GGWCC | 5 cut(s) | 272, 797, 2293, 3302, 3408 |
| VspI | ATTAAT | 2 cut(s) | 1056, 4160 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 3486, 3856 |
| XapI | RAATTY | 5 cut(s) | 65, 2201, 2454, 3778, 4045 |
| XbaI | TCTAGA | 2 cut(s) | 2171, 4396 |
| XceI | RCATGY | 2 cut(s) | 404, 4067 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 508, 4447 |
| XhoI | CTCGAG | 2 cut(s) | 137, 1706 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1374, 4197, 4272, 4611 |
| ZraI | GACGTC | 1 cut(s) | 3567 |
| ZrmI | AGTACT | 1 cut(s) | 3763 |
| Zsp2I | ATGCAT | 7 cut(s) | 751, 1564, 1921, 2128, 3340, 3403, 4255 |