Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011708

Physical Location & Seq

Genomic Coordinates Reverse (-)

5562580 .. 5571357

Gene Structure 8778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG067900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5037 bp

ATGGAGGGTTCGGAAGGAGAGAATCAGAATCGGAACCATGAGAATAGCAATAGTAAATTGAACAATTCCGGCGACGGAGGCAAGCCCAAGCGCCAGATGAAGACGCCGTTTCAGCTCGAAACCCTAGAGAAGGCCTATGCGTTGGAGACGTACCCATCGGAGTCGATTAGGGCGGAGCTGTCGGAGAAATTGGGGCTTTCCGATCGGCAGTTGCAGATGTGGTTCTGTCACAGAAGGCTGAAGGATAAGAAGGAAGGAGGTTCGGGTTCGGGTCCGGGTCCGGGTCCAGGACCGGCGAAGAAGCAGAGGAAATCAGTGGCGGTGTTGCCGGAGCCTCCAATTGATGACTTGGCACATGGGTCGGAGCCGGCGAGTGACTATGGGTCGGGTTCAGGCTCCGGCTCGAGCCCATTTGGTCATGCAGACCGCAATGTGGTGTCCAGGAGTGTTGTTGTTGAGGATATGCCAAGGAGGAGGCATTATGAGTCACAGCAGTCGATTACGGAGCTTAGAGCCATTGCTATTGTGGAAGCTCAATTGGGAGAGCCATTAAGGGAAGATGGCCCTGTGCTTGGGATAGAGTTTGATCAATTGCCCCCGGATGCATTCGGGGCACCTCTAGTTGCAGAGCAGCAGAAGCGGCATGATGCAAAACTAAATAAAGGTACTCCAAGATCTCTCCATGAATATCCATATCTTCAAGACCACCCCATTATTCGGCCTGATGTATATGGACAAGTTGCTCAATCTCATTTTCATGATTCAGCAATTGATGGTCCAACTGCAAGAGCTTCACCATTTGCAAGTGGAAATGAACAGTTGTCAAGGGTTCACGGTGGCCACAGTCGGGCTCGTCTTCTGTCACAACAGGAGAGGCAAGCAGTGGCCTTTTCATCTCCTGGTGATGATGGCTTACCTCAAAGGGACCCCTTTATCAATGTTAGAATGAATACTCAATATGGTGAACCCCCTATTATTGCACCGGAAAACTCTAATGTATTGTCTGATGGTCAAATTAATGACAATATGCTGAGAATGGAGAGGAAACGCAAGACTGAAGAAGTCAGAATGGCTAAAGAAGTAGAAGCGCATGAAGTTCGAATTCGGAAGGAGCTGGAGAAACAAGATATTCTGAGGAGAAAGGCTGAGAAAAGGAGGCAAAGGGAAGAGCTCCGAAAAGAGAGAGAGGAAGTGAGACGCAAAGCTGCACTTGAGAAGGCTACTGCAAGAAGGCTTCTTAATAAATCTATGGAACTTTATGAGGATGAGCAACTAGAGCTAATGGAGTTGGCTGCTGCAAGCAAGGGATTATCCTCAATAATTAGTATTGATCCCGACACCAACCTTGATGAATTCAGAGATGATCTGACGGCATTTCCACCCAAGTCTGTGCTATTGAAAAAACCATTTGCAGTTCATCCGTGGATCGATTCAGAGGAGAACATTGGTAACTTTCTCATGGTTTGGAGATTTTTGATTACATTTGCAGATGTTCTTGAGTTATGGCCTTTTACTGTGGATGAGTTTGTTCAAGCTTTTCATGACTATGATTCAAGGTTGTTAGGAGAGATTCATGTTGCTCTCTTGAGGTTGATTATAAAGGATATAGAAGATGTTGCAAGGACACCTTCTACTGGACTAGGTCTCAATCAAAATGGTGCTGCTAATCCTGGAGGTGGACATCCACAGATTGTTGAAGGAGCATATGCGTGGGGATTTGACATAAGGAACTGGCAGAAGCACTTAAATCTGCTAACATGGCCTGAAATTTTTCGCCAACTAGCACTCTCTGCTGGATTTGGACCACAGTTGAAGAAAAGGAGTATCTCATGGTCATACTTGCCTGATAATGATGAGGGTAAAGGTTGTCGTGATGTAATTTCAACTATCCGCAATGGTTCAGCAGCTGAAAATGCATTTGCAATAATGCAAGAAAAGGGCTTATTAGCTCCACGGAGATCCAGACATCGGTTGACACCGGGAACTGTAAAGTTTGCAGCTTTTCATGTCCTTTCTCTTGAGGGAAACAAGGGATTGACGGTGTTAGAACTTGCTGACAAGATTCAGAAATCTGGCCTTCGAGACCTGACAACAAGCAAGACTCCAGAGGCTTCAATTTCAGTTGCTCTGACAAGAGATACTAAGCTTTTTGAAAGAATTGCGCCTTCAACATATCGTGTACGATCTGCTTACAGAAAGGACCCTATTGATGCTGAGGCCATACTTTCTGCAGCTAGGAAGAAGGTTCAGATATTTGAAAATGGGATTTTAGCTGCAGAAGATGTCGATGAGGTTGAAAGAGATGATGCCGAAGAGGTTGAGAGAGATGAAGACTCTGATTGTGATGACGTTGATGAGGACCCTGAAGTTGATGACGTAGCTACTCCAGCCATAGTGAAGAAATCCCCTGATCAGTTTAATGAAGTGACTCCTTTTTCAGAGAATGGACAGGAAAATTTATGCATTGATGTTGCACCAACTGTGCAAAATGAGTTTGATAAGGATGTTTCATCTTTCCCCGTTACTGCTTCCAAAGAGGCAGACGGTCCAAGTGCTTCCTCCAAGCAGTGTGTTTCTGGTGTAGAAATTAGTACTAGCAATCTTGATCAAGAAAATATGGAGATTGATGAGAGCAAGGCAGGTGAGTCATGGGTTCAAGGGCTTACAGAAGGGGATTATTCTGATCTCAGTGTCGAAGAGCGTCTTATTTCTCTCGTTTCCTTAATTGGTATTGCAAATGAAGGAAACTCTATTCGTGTTGTTCTTGAGGATCGCTTAGAAGCAGCAAATGCTCTTAAGAAGCAAATGTGGGCGGAGGCACAGCTTGACAAAAGTCGCCTAAAAGAAGAGAATGTGAGTAAATTTGATATTCCATCTTTCATGGGAGGCAAAGCTGAAGCACATGTTCCCGGAGTGGAAGACGGCCAAAGTCCTCTACTGGATGTTTATAATAGAATCAATGAGGAAGGAGCTGCAGAAACTCAAAATTCGAATCATGGTTCACTAGTACTTCTGAATGGTGTGCCTGTTGAAAGGGCCATGGTACCTCAAGATACTTCCATGGGTCCTGAAAACATCTTGAATCAGCAATTGGCTTATGCATCAAAAAAGTCACGTTCACAGTTGAAATCATATATTGCCCACAGAGCAGAGGAGATGTATGCTTACAGGTCCCTCCCTCTTGGCCAAGATCGCAGGCATAATCGATACTGGCAATTTGTTGCATCTGCATCAAGCAATGATCCTGGTTCAGGCAGAATCTTTATTGAACTAAACAATGGAAATTGGAGGCTTATTGACACCGAAGAGGCATTTGACACTCTTTTGATGTCACTGGATACACGTGGGATTAGAGAATCCCATTTACGCTTAATGTTGCAAAAGATTGAGGCATCCTTCAAGGAAAATGTTCGTAGAAATGTGCATCCTTCAAGTAGAAATCATGTTAAAAAAGAAGCTGATGAAATGGATTCTAGTCCCGACTACCCTTCGGGTTTCGACAGCCCTGGAAGTACAGTTTCTGCTTTAAATACTGAGATTGGGGAGACGTCCTCTTCTTTCAGAATTGAGCTTAACCGAAATGAAAATGAGAAAAGGGCTGCCTTGAGTAGGTATCAAGATTTTCAGAAGTGGATCTGGAGAGAATGCTTTAGTACATCTGCATTATGTGCCTCGAAATATGGGAAAAAGAGGTGCAGACAGCTCTTTGATTTTTGCGATTTCTGCCTCAGTTGTTACCACTTTGAAGACTCCCACTGCAGTTTCTGCCATCAGACGTTTGGTGCTACCTATGAAAATCTTGACTTTTCTGAACATGTAATACAATGTAAAGAGAGAAGGAACTTGGAAACTTGCGATATCCATGTTCCTGGTACTTCTGTTCCTTTGGCCAGCAAATTGCTCAAGGCCTTCATGGCTCTTGTTGAGGTATCTGTTCCACCCGAAGCCCTTCAATCCTTTTGGACAGAAGACTGTCGAAAGACGTGGGGAGCAAAACTGAATGCGTCATCATCGGTTGAAGAGCTTCTGCAGATGTTAACTGTGTTTGAGACTGCGATGAAACGAGACTTTGTGTCATCAAACTTTGCAGCGACTGATGAATTACTGGGCTCCAGCAAACAGTCAGTGATTGCTAATCGTGATTATCTAGACACCAAATCAGTTTCTGTACTTCCTTGGATACCACATACCACGGCAGCTGTGGCTCTGAGGGTTTATGAGATGGACTCAGCAATTACATATATACCGAATGAGAAACCTGAGCCCAATGGCGACAAGGAAGTCGGAGAACATATTAAGATTCCTTTGAGATTCACCCCAATGAGAAATGATAGGGAGATCGAACCAACAGAGACAGACCACAACGAACAAAGTACTCACCTGAAAAGTGCACGAAACAGCCTCAAACGTGGTAGAGGAGGTCGTGAGCAAGGACGTGGTAAAAAGTCCAAATCTGGTGGTAGTCGGCGAAAAGCTAGAGGTAATGAGAACGAGAATATGAGTCAAAGATTAGGACCTGTGGGGCGAAGAACGCAGGGACAAGGGAGTGGACGGGGCCGACGTACTGTTAGAAAGAGGAGAATGAAGAACAGGGCTGTCGAGGGGACACTTATGGGTCATGTGACTGACCTACGCAGTAGCCCCGACAGTGGAGGGGAATCACCCAGAAACTTGGCTGGGGAATGGGATGATGAAAATATCAATATGATCCATATAAAAGGTGATGAACAACGAGAGGAGTATGAGCAAGCAGAGGCACTGGAATCTGACGACGAAGAACAAGCAGTGGGATATGAACAAGGGAACTGGGAAATTGGATTTGATGGGACCTCCAGCGGTTGGAACAGTGGTCTACGAGAACCTAGTGATGAGGAGATGGATGCTTCTGAAGATGATAATAATGGCATTGAGGAAGCGAGAGAAGAAGATTCGGAAGGGGATGTAGATATGAGTGATGCTTCAGATGAAGTCCCAAACAGGATTATAAATGATGATGGCACTGATTCAGCTTCAGACGATGATGATTACAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001227 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

1678

Amino Acids

187.67

Weight (kDa)

5.13

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	28 - 84	7.7e-17	Homeodomain
DDT	PF02791	480 - 535	1e-19	DDT domain
HARE-HTH	PF05066	661 - 729	7.1e-19	HB1, ASXL, restriction endonuclease HTH domain
WHIM1	PF15612	879 - 923	3.6e-06	WSTF, HB1, Itc1p, MBD9 motif 1
WSD	PF15613	1056 - 1129	1.2e-21	Williams-Beuren syndrome DDT (WSD), D-TOX E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011708)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28420
fragaria_vesca	FvH4_3g08620
malus_domestica	MD05G1310200.v1.1 MD10G1289100.v1.1
prunus_persica	Prupe.4G052600_v2.0.a1
pyrus_communis	pycom05g28660 pycom10g24170
rosa_chinensis	RchiOBHm_Chr5g0009221
rosa_laevigata	RLG00000031635 RLG00000031641
rosa_multiflora	Rmu_sc0006233.1_g000030
rosa_roxburghii	Rroxscaffold_1G00066840 Rroxscaffold_1G00067540
rosa_rugosa	Rorug04G0441600
rosa_samantha	Rh5AG071400 Rh5BG067900 Rh5CG080200 Rh5DG067900
rosa_wichuraiana	Rw5G006670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1598, 2949, 4985
AarI	CACCTGC	1 cut(s)	2630
AasI	GACNNNNNNGTC	1 cut(s)	4280
AatII	GACGTC	1 cut(s)	3551
Acc36I	ACCTGC	1 cut(s)	2630
Acc65I	GGTACC	1 cut(s)	3043
AccB1I	GGYRCC	2 cut(s)	613, 3043
AccB7I	CCANNNNNTGG	1 cut(s)	4839
AccI	GTMKAC	1 cut(s)	4852
AciI	CCGC	7 cut(s)	173, 320, 427, 640, 1891, 2813, 4836
AclWI	GGATC	7 cut(s)	1325, 1433, 1953, 2778, 3236, 3641, 4702
AcoI	YGGCCR	4 cut(s)	838, 2923, 3184, 3888
AcsI	RAATTY	6 cut(s)	1101, 1352, 1767, 2455, 2861, 2986
AcuI	CTGAAG	7 cut(s)	260, 1077, 2385, 2916, 4908, 4944, 4995
AcvI	CACGTG	1 cut(s)	3344
AcyI	GRCGYC	2 cut(s)	104, 3548
AflII	CTTAAG	1 cut(s)	2795
AflIII	ACRYGT	3 cut(s)	2902, 3341, 3814
AhdI	GACNNNNNGTC	2 cut(s)	382, 4072
AhlI	ACTAGT	1 cut(s)	3004
AjiI	CACGTC	2 cut(s)	3984, 4436
AjnI	CCWGG	7 cut(s)	286, 440, 898, 1669, 3244, 3505, 3868
AjuI	GAANNNNNNNTTGG	2 cut(s)	3074, 3106
Alw21I	GWGCWC	2 cut(s)	1173, 4393
Alw26I	GTCTC	8 cut(s)	140, 1189, 1649, 2076, 3539, 4043, 4059, 4346
Alw44I	GTGCAC	1 cut(s)	4389
AlwI	GGATC	7 cut(s)	1325, 1433, 1953, 2778, 3236, 3641, 4702
AlwNI	CAGNNNCTG	5 cut(s)	1907, 3521, 3765, 4094, 4166
Ama87I	CYCGRG	1 cut(s)	403
ApaLI	GTGCAC	1 cut(s)	4389
ApoI	RAATTY	6 cut(s)	1101, 1352, 1767, 2455, 2861, 2986
AseI	ATTAAT	1 cut(s)	1017
Asp700I	GAANNNNTTC	4 cut(s)	1770, 3408, 3948, 4023
Asp718I	GGTACC	1 cut(s)	3043
AspLEI	GCGC	3 cut(s)	93, 1090, 2164
AsuC2I	CCSGG	5 cut(s)	276, 282, 599, 1980, 2910
AsuHPI	GGTGA	8 cut(s)	786, 914, 974, 2654, 4306, 4370, 4653, 4733
AsuII	TTCGAA	2 cut(s)	1099, 2990
AvaI	CYCGRG	1 cut(s)	403
BaeGI	GKGCMC	2 cut(s)	616, 4393
BaeI	ACNNNNGTAYC	2 cut(s)	3864, 3897
BalI	TGGCCA	3 cut(s)	840, 3186, 3890
BanI	GGYRCC	2 cut(s)	613, 3043
BanII	GRGCYC	5 cut(s)	410, 853, 1173, 4112, 4266
BbrPI	CACGTG	1 cut(s)	3344
BbsI	GAAGAC	6 cut(s)	107, 848, 2337, 2925, 3753, 3975
Bbv12I	GWGCWC	2 cut(s)	1173, 4393
BbvCI	CCTCAGC	1 cut(s)	2214
BceAI	ACGGC	4 cut(s)	91, 1386, 2938, 4209
BcgI	CGANNNNNNTGC	4 cut(s)	342, 376, 1079, 1113
BciT130I	CCWGG	7 cut(s)	288, 442, 900, 1671, 3246, 3507, 3870
BciVI	GTATCC	2 cut(s)	3331, 4173
BclI	TGATCA	3 cut(s)	586, 2410, 2605
BcnI	CCSGG	5 cut(s)	276, 282, 599, 1980, 2910
BcoDI	GTCTC	8 cut(s)	140, 1189, 1649, 2076, 3539, 4043, 4059, 4346
BcuI	ACTAGT	1 cut(s)	3004
BfmI	CTRYAG	5 cut(s)	2229, 2274, 2973, 3757, 4028
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	2795
BfuAI	ACCTGC	1 cut(s)	2630
BfuI	GTATCC	2 cut(s)	3331, 4173
BglI	GCCNNNNNGGC	1 cut(s)	3914
BglII	AGATCT	1 cut(s)	674
BmcAI	AGTACT	3 cut(s)	2593, 3009, 4375
BmeRI	GACNNNNNGTC	2 cut(s)	382, 4072
BmeT110I	CYCGRG	1 cut(s)	403
BmgBI	CACGTC	2 cut(s)	3984, 4436
BmrI	ACTGGG	2 cut(s)	4115, 4816
BmuI	ACTGGG	2 cut(s)	4115, 4816
BoxI	GACNNNNGTC	1 cut(s)	2832
BpiI	GAAGAC	6 cut(s)	107, 848, 2337, 2925, 3753, 3975
BplI	GAGNNNNNCTC	4 cut(s)	3536, 3568, 4211, 4243
BpmI	CTGGAG	7 cut(s)	1136, 1692, 2088, 2370, 3658, 4096, 4816
Bpu10I	CCTNAGC	2 cut(s)	2214, 4260
Bpu14I	TTCGAA	2 cut(s)	1099, 2990
BpuEI	CTTGAG	8 cut(s)	1232, 1517, 1606, 2039, 2786, 3033, 3625, 3887
BpuMI	CCSGG	5 cut(s)	276, 282, 599, 1980, 2910
Bsa29I	ATCGAT	2 cut(s)	1428, 3205
BsaAI	YACGTR	1 cut(s)	3344
BsaHI	GRCGYC	2 cut(s)	104, 3548
BsaI	GGTCTC	2 cut(s)	1649, 2076
BsaJI	CCNNGG	9 cut(s)	467, 597, 1421, 1952, 3039, 3060, 3505, 4175, 4191
BsaWI	WCCGGW	1 cut(s)	982
Bse118I	RCCGGY	2 cut(s)	292, 367
Bse1I	ACTGG	8 cut(s)	1639, 1736, 2943, 3215, 3339, 4110, 4764, 4811
Bse3DI	GCAATG	4 cut(s)	436, 516, 1900, 3244
BseBI	CCWGG	7 cut(s)	288, 442, 900, 1671, 3246, 3507, 3870
BseCI	ATCGAT	2 cut(s)	1428, 3205
BseDI	CCNNGG	9 cut(s)	467, 597, 1421, 1952, 3039, 3060, 3505, 4175, 4191
BseMI	GCAATG	4 cut(s)	436, 516, 1900, 3244
BseNI	ACTGG	8 cut(s)	1639, 1736, 2943, 3215, 3339, 4110, 4764, 4811
BseRI	GAGGAG	8 cut(s)	487, 1150, 1451, 3167, 4431, 4591, 4751, 4886
BseSI	GKGCMC	2 cut(s)	616, 4393
BseYI	CCCAGC	1 cut(s)	4676
BsgI	GTGCAG	2 cut(s)	1191, 3715
Bsh1285I	CGRYCG	1 cut(s)	205
BshNI	GGYRCC	2 cut(s)	613, 3043
BshVI	ATCGAT	2 cut(s)	1428, 3205
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	2 cut(s)	1173, 4393
BsiHKCI	CYCGRG	1 cut(s)	403
BslFI	GGGAC	7 cut(s)	938, 3157, 3462, 4551, 4618, 4840, 4955
BsmAI	GTCTC	8 cut(s)	140, 1189, 1649, 2076, 3539, 4043, 4059, 4346
BsmBI	CGTCTC	3 cut(s)	140, 1189, 3539
BsmFI	GGGAC	7 cut(s)	938, 3157, 3462, 4551, 4618, 4840, 4955
BsmI	GAATGC	3 cut(s)	605, 3650, 4006
Bso31I	GGTCTC	2 cut(s)	1649, 2076
BsoBI	CYCGRG	1 cut(s)	403
Bsp119I	TTCGAA	2 cut(s)	1099, 2990
Bsp1286I	GDGCHC	7 cut(s)	410, 616, 853, 1173, 4112, 4266, 4393
Bsp19I	CCATGG	2 cut(s)	3039, 3060
BspACI	CCGC	7 cut(s)	173, 320, 427, 640, 1891, 2813, 4836
BspDI	ATCGAT	2 cut(s)	1428, 3205
BspHI	TCATGA	2 cut(s)	757, 1540
BspMAI	CTGCAG	5 cut(s)	2233, 2278, 2977, 3761, 4032
BspMI	ACCTGC	1 cut(s)	2630
BspPI	GGATC	7 cut(s)	1325, 1433, 1953, 2778, 3236, 3641, 4702
BspQI	GCTCTTC	3 cut(s)	1161, 2691, 4014
BspT104I	TTCGAA	2 cut(s)	1099, 2990
BspT107I	GGYRCC	2 cut(s)	613, 3043
BspTI	CTTAAG	1 cut(s)	2795
BspTNI	GGTCTC	2 cut(s)	1649, 2076
BsrDI	GCAATG	4 cut(s)	436, 516, 1900, 3244
BsrFI	RCCGGY	2 cut(s)	292, 367
BsrI	ACTGG	8 cut(s)	1639, 1736, 2943, 3215, 3339, 4110, 4764, 4811
BssAI	RCCGGY	2 cut(s)	292, 367
BssECI	CCNNGG	9 cut(s)	467, 597, 1421, 1952, 3039, 3060, 3505, 4175, 4191
BssNI	GRCGYC	2 cut(s)	104, 3548
BssT1I	CCWWGG	4 cut(s)	467, 3039, 3060, 4175
Bst2UI	CCWGG	7 cut(s)	288, 442, 900, 1671, 3246, 3507, 3870
Bst6I	CTCTTC	7 cut(s)	1161, 2307, 2691, 2841, 3300, 3559, 4014
BstACI	GRCGYC	2 cut(s)	104, 3548
BstAFI	CTTAAG	1 cut(s)	2795
BstAPI	GCANNNNNTGC	4 cut(s)	1790, 2789, 3668, 3765
BstBAI	YACGTR	1 cut(s)	3344
BstBI	TTCGAA	2 cut(s)	1099, 2990
BstC8I	GCNNGC	7 cut(s)	83, 369, 879, 1300, 3197, 3892, 4749
BstDSI	CCRYGG	5 cut(s)	1421, 1952, 3039, 3060, 4191
BstENI	CCTNNNNNAGG	3 cut(s)	128, 3249, 3607
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	3 cut(s)	93, 1090, 2164
BstMAI	GTCTC	8 cut(s)	140, 1189, 1649, 2076, 3539, 4043, 4059, 4346
BstMCI	CGRYCG	1 cut(s)	205
BstNI	CCWGG	7 cut(s)	288, 442, 900, 1671, 3246, 3507, 3870
BstNSI	RCATGY	2 cut(s)	2906, 3818
BstPAI	GACNNNNGTC	1 cut(s)	2832
BstSFI	CTRYAG	5 cut(s)	2229, 2274, 2973, 3757, 4028
BstSLI	GKGCMC	2 cut(s)	616, 4393
BstV2I	GAAGAC	6 cut(s)	107, 848, 2337, 2925, 3753, 3975
BstX2I	RGATCY	3 cut(s)	674, 1958, 3633
BstXI	CCANNNNNNTGG	2 cut(s)	3869, 4672
BstYI	RGATCY	3 cut(s)	674, 1958, 3633
Bsu15I	ATCGAT	2 cut(s)	1428, 3205
BsuI	GTATCC	2 cut(s)	3331, 4173
BsuTUI	ATCGAT	2 cut(s)	1428, 3205
BtgI	CCRYGG	5 cut(s)	1421, 1952, 3039, 3060, 4191
BtgZI	GCGATG	1 cut(s)	4070
BtrI	CACGTC	2 cut(s)	3984, 4436
BtsI	GCAGTG	4 cut(s)	888, 2573, 3754, 4791
BveI	ACCTGC	1 cut(s)	2630
Cac8I	GCNNGC	7 cut(s)	83, 369, 879, 1300, 3197, 3892, 4749
CaiI	CAGNNNCTG	5 cut(s)	1907, 3521, 3765, 4094, 4166
CciI	TCATGA	2 cut(s)	757, 1540
CfoI	GCGC	3 cut(s)	93, 1090, 2164
Cfr10I	RCCGGY	2 cut(s)	292, 367
ClaI	ATCGAT	2 cut(s)	1428, 3205
CseI	GACGC	4 cut(s)	112, 1206, 2690, 3993
CspCI	CAANNNNNGTGG	2 cut(s)	4438, 4473
DraI	TTTAAA	1 cut(s)	3528
DrdI	GACNNNNNNGTC	1 cut(s)	4280
DriI	GACNNNNNGTC	2 cut(s)	382, 4072
DseDI	GACNNNNNNGTC	1 cut(s)	4280
EaeI	YGGCCR	4 cut(s)	838, 2923, 3184, 3888
Eam1104I	CTCTTC	7 cut(s)	1161, 2307, 2691, 2841, 3300, 3559, 4014
Eam1105I	GACNNNNNGTC	2 cut(s)	382, 4072
EarI	CTCTTC	7 cut(s)	1161, 2307, 2691, 2841, 3300, 3559, 4014
EciI	GGCGGA	2 cut(s)	188, 2828
Ecl136II	GAGCTC	1 cut(s)	1171
Eco130I	CCWWGG	4 cut(s)	467, 3039, 3060, 4175
Eco147I	AGGCCT	2 cut(s)	134, 3908
Eco24I	GRGCYC	5 cut(s)	410, 853, 1173, 4112, 4266
Eco31I	GGTCTC	2 cut(s)	1649, 2076
Eco32I	GATATC	1 cut(s)	3859
Eco53kI	GAGCTC	1 cut(s)	1171
Eco57I	CTGAAG	7 cut(s)	260, 1077, 2385, 2916, 4908, 4944, 4995
Eco72I	CACGTG	1 cut(s)	3344
Eco88I	CYCGRG	1 cut(s)	403
EcoICRI	GAGCTC	1 cut(s)	1171
EcoNI	CCTNNNNNAGG	3 cut(s)	128, 3249, 3607
EcoO109I	RGGNCCY	7 cut(s)	925, 2200, 2359, 3065, 3171, 4514, 4827
EcoRI	GAATTC	2 cut(s)	1101, 1352
EcoRII	CCWGG	7 cut(s)	286, 440, 898, 1669, 3244, 3505, 3868
EcoRV	GATATC	1 cut(s)	3859
EcoT14I	CCWWGG	4 cut(s)	467, 3039, 3060, 4175
EcoT22I	ATGCAT	4 cut(s)	607, 1918, 2465, 3103
EcoT38I	GRGCYC	5 cut(s)	410, 853, 1173, 4112, 4266
ErhI	CCWWGG	4 cut(s)	467, 3039, 3060, 4175
Esp3I	CGTCTC	3 cut(s)	140, 1189, 3539
FalI	AAGNNNNNCTT	6 cut(s)	1194, 1226, 1612, 1644, 2688, 2720
FaqI	GGGAC	7 cut(s)	938, 3157, 3462, 4551, 4618, 4840, 4955
FauNDI	CATATG	1 cut(s)	1705
FbaI	TGATCA	3 cut(s)	586, 2410, 2605
FblI	GTMKAC	1 cut(s)	4852
FriOI	GRGCYC	5 cut(s)	410, 853, 1173, 4112, 4266
GlaI	GCGC	3 cut(s)	92, 1089, 2163
GsaI	CCCAGC	1 cut(s)	4680
GsuI	CTGGAG	7 cut(s)	1136, 1692, 2088, 2370, 3658, 4096, 4816
HaeII	RGCGCY	1 cut(s)	94
HgaI	GACGC	4 cut(s)	112, 1206, 2690, 3993
HhaI	GCGC	3 cut(s)	93, 1090, 2164
Hin1I	GRCGYC	2 cut(s)	104, 3548
Hin6I	GCGC	3 cut(s)	91, 1088, 2162
HinP1I	GCGC	3 cut(s)	91, 1088, 2162
HincII	GTYRAC	2 cut(s)	1974, 4038
HindII	GTYRAC	2 cut(s)	1974, 4038
HindIII	AAGCTT	2 cut(s)	1533, 2144
HpaI	GTTAAC	1 cut(s)	4038
HphI	GGTGA	8 cut(s)	786, 914, 974, 2654, 4306, 4370, 4653, 4733
Hpy99I	CGWCG	3 cut(s)	77, 4563, 4775
Hsp92I	GRCGYC	2 cut(s)	104, 3548
HspAI	GCGC	3 cut(s)	91, 1088, 2162
KflI	GGGWCCC	1 cut(s)	925
KpnI	GGTACC	1 cut(s)	3047
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	3 cut(s)	586, 2410, 2605
KspAI	GTTAAC	1 cut(s)	4038
LguI	GCTCTTC	3 cut(s)	1161, 2691, 4014
MfeI	CAATTG	5 cut(s)	339, 536, 590, 768, 3089
MflI	RGATCY	3 cut(s)	674, 1958, 3633
MhlI	GDGCHC	7 cut(s)	410, 616, 853, 1173, 4112, 4266, 4393
MlsI	TGGCCA	3 cut(s)	840, 3186, 3890
MluNI	TGGCCA	3 cut(s)	840, 3186, 3890
MlyI	GAGTC	9 cut(s)	170, 494, 2095, 2327, 2422, 2654, 3743, 4220, 4510
MmeI	TCCRAC	6 cut(s)	123, 162, 342, 803, 4264, 4820
Mox20I	TGGCCA	3 cut(s)	840, 3186, 3890
Mph1103I	ATGCAT	4 cut(s)	607, 1918, 2465, 3103
MroNI	GCCGGC	1 cut(s)	367
MroXI	GAANNNNTTC	4 cut(s)	1770, 3408, 3948, 4023
MscI	TGGCCA	3 cut(s)	840, 3186, 3890
MslI	CAYNNNNRTG	4 cut(s)	756, 1545, 1708, 4319
Msp20I	TGGCCA	3 cut(s)	840, 3186, 3890
MspA1I	CMGCKG	3 cut(s)	1907, 4199, 4836
MspCI	CTTAAG	1 cut(s)	2795
MunI	CAATTG	5 cut(s)	339, 536, 590, 768, 3089
Mva1269I	GAATGC	3 cut(s)	605, 3650, 4006
MvaI	CCWGG	7 cut(s)	288, 442, 900, 1671, 3246, 3507, 3870
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	5 cut(s)	276, 282, 599, 1980, 2910
NcoI	CCATGG	2 cut(s)	3039, 3060
NdeI	CATATG	1 cut(s)	1705
NgoMIV	GCCGGC	1 cut(s)	367
NmuCI	GTSAC	8 cut(s)	227, 374, 486, 861, 2425, 3111, 3330, 4621
NsiI	ATGCAT	4 cut(s)	607, 1918, 2465, 3103
NspI	RCATGY	2 cut(s)	2906, 3818
NspV	TTCGAA	2 cut(s)	1099, 2990
PaeR7I	CTCGAG	1 cut(s)	403
PagI	TCATGA	2 cut(s)	757, 1540
PaqCI	CACCTGC	1 cut(s)	2630
PceI	AGGCCT	2 cut(s)	134, 3908
PciI	ACATGT	2 cut(s)	2902, 3814
PciSI	GCTCTTC	3 cut(s)	1161, 2691, 4014
PcsI	WCGNNNNNNNCGW	2 cut(s)	368, 4558
PctI	GAATGC	3 cut(s)	605, 3650, 4006
PdiI	GCCGGC	1 cut(s)	369
PdmI	GAANNNNTTC	4 cut(s)	1770, 3408, 3948, 4023
PflFI	GACNNNGTC	1 cut(s)	1641
PflMI	CCANNNNNTGG	1 cut(s)	4839
PfoI	TCCNGGA	4 cut(s)	286, 440, 1669, 2908
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	9 cut(s)	169, 493, 2095, 2327, 2422, 2653, 3743, 4220, 4509
PmaCI	CACGTG	1 cut(s)	3344
PmlI	CACGTG	1 cut(s)	3344
PpsI	GAGTC	9 cut(s)	169, 493, 2095, 2327, 2422, 2653, 3743, 4220, 4509
Ppu21I	YACGTR	1 cut(s)	3344
PpuMI	RGGWCCY	7 cut(s)	925, 2200, 2359, 3065, 3171, 4514, 4827
PscI	ACATGT	2 cut(s)	2902, 3814
PshAI	GACNNNNGTC	1 cut(s)	2832
PshBI	ATTAAT	1 cut(s)	1017
PsiI	TTATAA	3 cut(s)	1598, 2949, 4985
Psp124BI	GAGCTC	1 cut(s)	1173
Psp5II	RGGWCCY	7 cut(s)	925, 2200, 2359, 3065, 3171, 4514, 4827
Psp6I	CCWGG	7 cut(s)	286, 440, 898, 1669, 3244, 3505, 3868
PspCI	CACGTG	1 cut(s)	3344
PspFI	CCCAGC	1 cut(s)	4676
PspGI	CCWGG	7 cut(s)	286, 440, 898, 1669, 3244, 3505, 3868
PspPPI	RGGWCCY	7 cut(s)	925, 2200, 2359, 3065, 3171, 4514, 4827
PspXI	VCTCGAGB	1 cut(s)	403
PsrI	GAACNNNNNNTAC	2 cut(s)	3804, 3836
PstI	CTGCAG	5 cut(s)	2233, 2278, 2977, 3761, 4032
PstNI	CAGNNNCTG	5 cut(s)	1907, 3521, 3765, 4094, 4166
PsuI	RGATCY	3 cut(s)	674, 1958, 3633
PsyI	GACNNNGTC	1 cut(s)	1641
PvuI	CGATCG	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	1907, 4199
RseI	CAYNNNNRTG	4 cut(s)	756, 1545, 1708, 4319
SacI	GAGCTC	1 cut(s)	1173
SapI	GCTCTTC	3 cut(s)	1161, 2691, 4014
ScaI	AGTACT	3 cut(s)	2593, 3009, 4375
SchI	GAGTC	9 cut(s)	170, 494, 2095, 2327, 2422, 2654, 3743, 4220, 4510
SduI	GDGCHC	7 cut(s)	410, 616, 853, 1173, 4112, 4266, 4393
SfcI	CTRYAG	5 cut(s)	2229, 2274, 2973, 3757, 4028
Sfr274I	CTCGAG	1 cut(s)	403
SfuI	TTCGAA	2 cut(s)	1099, 2990
SlaI	CTCGAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	4 cut(s)	756, 1545, 1708, 4319
SpeI	ACTAGT	1 cut(s)	3004
SseBI	AGGCCT	2 cut(s)	134, 3908
SsiI	CCGC	7 cut(s)	173, 320, 427, 640, 1891, 2813, 4836
SstI	GAGCTC	1 cut(s)	1173
StuI	AGGCCT	2 cut(s)	134, 3908
StyI	CCWWGG	4 cut(s)	467, 3039, 3060, 4175
TatI	WGTACW	6 cut(s)	2591, 3007, 3512, 3653, 4168, 4373
TauI	GCSGC	1 cut(s)	643
TseFI	GTSAC	8 cut(s)	227, 374, 486, 861, 2425, 3111, 3330, 4621
Tsp45I	GTSAC	8 cut(s)	227, 374, 486, 861, 2425, 3111, 3330, 4621
TspGWI	ACGGA	4 cut(s)	90, 518, 1410, 1969
Tth111I	GACNNNGTC	1 cut(s)	1641
Van91I	CCANNNNNTGG	1 cut(s)	4839
Vha464I	CTTAAG	1 cut(s)	2795
VneI	GTGCAC	1 cut(s)	4389
VspI	ATTAAT	1 cut(s)	1017
XagI	CCTNNNNNAGG	3 cut(s)	128, 3249, 3607
XapI	RAATTY	6 cut(s)	1101, 1352, 1767, 2455, 2861, 2986
XbaI	TCTAGA	1 cut(s)	4147
XceI	RCATGY	2 cut(s)	2906, 3818
XcmI	CCANNNNNNNNNTGG	3 cut(s)	523, 3776, 4198
XhoI	CTCGAG	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	4852
XmnI	GAANNNNTTC	4 cut(s)	1770, 3408, 3948, 4023
ZraI	GACGTC	1 cut(s)	3549
ZrmI	AGTACT	3 cut(s)	2593, 3009, 4375
Zsp2I	ATGCAT	4 cut(s)	607, 1918, 2465, 3103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.