MD05G1310200.v1.1

HB1, ASXL, restriction endonuclease HTH domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011708
Physical Location & Seq
Forward (+)
44090063 .. 44100535
10473 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1310200.v1.1.491

Sequence Viewer

Length: 5283 bp
ATGGAGGCGGCGTCGGAGGGAGAAAATCAGAATAAAAATCATGAGAGCAATAGTAAACTTAACAATTCCAGTGAGGGGCAGAGCAAGCCCAAGCGCCAGATGAAGACCCCCTTTCAGCTCGAAACCCTTGAGAAAGCATATGCATTGGAGACCTACCCGTCGGAGGCGATTAGGGCTGAGCTATCGGAAAAATTAGGGCTTTCCGATCGGCAGTTGCAGATGTGGTTCTGTCACAGAAGGCTGAAGGACAAGAAGGAAGGGGGTCCACCGAAGAAGCAGCGGAAATTGGTAGCCGCTTTGCCTGAGCCCCCCATTGATGATTTGGCTCATGGGTCAGAGCCGGGTAGTGATTATGGGTCCGGTTCAGGCTCCGGGTCAAGCCCCTTTGGTCACGCGGAGTTGCGGAATGTGGTGGCTAGGGGTGTGGCTGATGACATTCCAATGAGGGGGAGGAGGTATTATGAGTCGCCACAGTCGATCTTGGAGCTCAGGGCCATTGCTTGTGTGGAAGCTCAATTGGGAGAGCCATTGAGGGAAGATGGCCCGCTTCTCGGGATAGAGTTTGATCCTTTGCCGCCCGATGCATTTGGGGCACCTCTAGCAGTTGCGGAGCAGCATAAGCGGTCTGCCCATGCTTTGGAGGGCAAATATGAGCGTCATGATGCAAAACCAATTAAAGCTACGCCAAGGGCTATCCATGAATATCCCTTTCTTCAAGATCACTCCAGTATTCGGTCTGATGCATACGGACAAGTCTCTCAATCTCATTTTCACGATTCAGCAATTGATGGCCCAACTGCAAGAACTTCGTCATTTGCTGTTGGAAATGAGCCATTGTCAAGGGTTCATGGTGTCCATGGTCATGCGTCACGTGTTCGTCTTCTGTCTCAGCAGGAGAGGCAAGTAGTGCCCTACTCATCTCCTGTTGATGATGGCAGTGTAGCACAAAGGGACTCCTTCACTAACGTGAGGGTAAATACTCAGTTTAGTGATCCCCCTGTTGTTGCACCTGCGCTGGAAAACTCTAATGTATTATCTGAAGGTCAAATTAATGACTCTATTCTGAGAATGGAGAGGAAACGCAAGAGTGAAGAAGCGAGAATCGCTAAAGAAGTTGAAGCTCATGAGTTGCGGATCCGGAAGGAGCTGGAGAAACAAGATATTCTGAGGAGAAAGAATGAGGAACGAATGAGGAAGGAAATGGAAAAACAAGACCGTGAGAGACGAAAAGAAGAAGAGAGGTTGATGCGTGAGAGGCAACGCGAGGAAGAGAGATTAAAGCGTGAGCAAAAACGTGAAATTGAACGAAGGGAAAAGTTTTTACAGAAAGAATATATAAGAGCTGAGAAAAGGAGGCAGAAGGAAGAGCTTCGCAAAGAGAGAGAGGTAGTGAAACGCAAAGCTGCACTTGAGAAGGCGACTGCACGCAGGCTTGCTAAAGAGTCTATGGAGCTTATTGAGGATGAACAACTAGAATTAATGGAGTTGGCTGCTACAAGCAAGGGTTTATCCTCCATTATTTGTATTGATCTTGACACCCTGCAAAACCTTGATGCATTCAGAGATTCTTTGGTTGCATTCCCACCTAGGTCTGTGCAGTTAAAAAGACCATTTACAATTCAGCCATGGATCAATTCAGAGGCGAATATTGGTAACCTTCTCATGGTTTGGAGATTCTTAATTACCTTTGCTGATGTTCTCGAGTTATGGCCTTTTACTCTTGATGAGTTTGTCCAAGCATTTCATGACTATGATTCAAGGTTGTTAGGAGAGATCCATGTTGCTCTCTTGAGGTTGATTATCAAAGATATTGAAGATGTTGCAAGGACTCCTACTGGATTAGGAATAAATCAAAATGGTGCTGCTAATCCTGGAGGTGGACACCCACAGATTGTTGAAGGAGCTTATGCATGGGGCTTTGATATACGGAACTGGCAGCAGCACTTAAGTCTGCTGACATGGCCTGAAATATTCCGTCAACTAGCACTCTCTGCTGGATTTGGGCCACAGCTGAAGAAAAGGAGTATCGCATGGTCATACACACCTGATAATCACGAGGGTAAAGGTTGTCAGGATGCAATTTCTAATCTAAGAAATGGTTCTGCAGCTGTAAATGCATTTGCAGTAATGCAAGAGAAAGGCTTACTGGCTCCACGAAGATCTAGACACCGGTTGACTCCTGGAACTGTAAAGTTTGCAGCTTTTCATGTGCTCTCACTTGAGGGAAATAAGGGACTAACAGTGTTAGATCTTGCAGACAAGATTCAGAAATCTGGCCTTCGGGACCTGACAACAAGCAAGACTCCTGAAGCGTCAATTTCTGTTGCTTTGACAAGAGATACTAAGCTTTTTGAAAGAATAGCTCCTTCAACATACCGTGTACGAGCTGCTTACAGAAAGGATCCTGATGATGCTGAGGCCATACTTTCTGCAGCCAGGAAGAAAATTCAAATATTTGAAAATGGGATTTTAGCTGCAGAAGATGTCGATGATGTTGAAAGAGATGATGTTGAAAATGATGAGGTTGAAAGAGACGAAGACTCTGAATGTGAAGTTGATGAAGATCCTGAAGTTGATGATTTAGCTACTCCATCAGTTGCAAAGAAATCCCCTGATGATTACAATGAAGTAATTAGTTTCTCAGAAAATGGAAAGGACAGTTTAAGCAATGATGTTGGACTTGCTGTGAAAAATGAGTTTGATAAGGATGTTTTATGCTCCTCATTGACTGGTTCCAAAGATGCATTCTGTCCTAGTGCTTCCTCAAAACAGTGTGTTTTGGGTGCAGATATTAGTACAAGTCATCTTGACCAAGAAAATATGGAGATTGATGAAAGCAAGTCAGGTGAGTCATGGGTTCAAGGACTTACAGAAGGGGAGTATTCTGACCTCAGCGTGGAAGAGCGTCTGAGTGGTCTTGTTGCCTTAATTGGTGTTGCAAATGAAGGAAATACCATTCGTGTTGTTCTCGAGGATCGCTTAGAAGCTGCAAATGCTCTTAAGAAGCAAATGTGGGCAGAGGCACAGCTGGATAAAAGTCGCCTAAAAGAAGAGAATGTTGGTAGGTTAGATTTTCCATCTTTAATGGGAGGCAAAGCTGAAGTACAAGCTACTGGAGTAGAGGACGGCCTAAGTCCCTTACGGGATGTTGATAACAGGAACATTGATGCATCTCCAGTCACTGCAGAAAATGAAAAGTCAATCCATGGGTCACAAGGTGTTCAGAATCAGCTTAATGGTGTGCATGGTGAAAGGACCTCAGCAGCCCAAGATATCTCCATGGGTTCTGATAATTTTTTGACTCAGCAACTTGCATATGCATCAAAAAGGTCGCGCTCACAATTAAAATCGTATATTGCACATAGAGCAGAGGAGATGTTTGCATACAGGTCCCTGCCTCTTGGTCAAGATCGTAGGCATAATCGATACTGGCAATTTGTTGCATCTGCATCAAGACATGACCCTGGTTCAGGCAGAATTTTCATTGAATTGAACAATGGAAGCTGGAGGCTTATTGACACTGAAGAGGCCTTTGATGCTCTTGTTACGTCTTTGGACGCACGCGGGATTAGGGAATCTCATTTACGCTTAATGTTGCAAAAGATTGAGGCATCCTTCAAGGAGAATGTTCAGAAAAATACGCATCGTCCTAACAATGCAGGCCCAAGTAAAAACCATGTTAAAGATGAAGCTGACGAAATGGATTCTAGTCCTGATTTCCCTTCTCATTTTGACAGCCCTGAAAGTGCAGTTTGTGCTTTGAACTCTGATACAGCGCAGACCTCATCTTCTTTCAGAATTGAGCTTGACAGAAGTGAAACTGAGAAAAGGGCTGCCTTGAGAAGGTATCAAGATTTTCAGAAGTGGATGTGGAAAGAATGCTCTAATTCATCTACCTTATGTGCCACGAAATATGGGAAGGAGAGATGCAGACCGCTGTTTGATGTCTGCGATGTCTGCCTCAATTGTTATTACTTTGAGGATTCCCACTGCTATACTTGCCATCAGACTTTTGATGCTTTCAACAGAAATTTTGACTTTGGTGAACATGTAATGCAATGTAAAGAAAAAAGGATGTTGGAACCTTGGAATTTCGATATTCCTTGTACTTCTCTTCCCTTGGCCAGAAGATTGCTCAAGACGTTAATAGCTCTTGTTGAGGTATCTATTCCACCAGAAGCTCTTCAATTGTCTTGGACTGATGACCGTCGAAAGATGTGGGGAGAGAAACTGAATGCATCATCATCAATGGATGAACTTCTTCAGATATTGACTCTGGTTGAGACTGCAGTGAAGAAAGACTTTCTGTCATCACACTTTGCAGTGACGGAGGAATTGCTGGGCTCCTGCAAACAGCCAGGGGTTGTTCGCGATTATCTAGCCAGTGGATCCGTTCCTGTACTTCCTTGGATACCACATACCACTGCAGCTGTGGCTCTGAGGCTTCTTGAGATAGATTCATCAATTACATATGTAAAGCAAGCGAAAGCTGAGCCCACCACAGACAAGGAAGTGGGAGAATATCTTAATCAACCTATGAGACTTCCGACATCAAGGAGTGAGACTGAACTAACTGAAGCAGGCCTCAATGAATACATGAGGGAAGAAAACAGTACTCACCTGAAAAGTGGACGAAACAGCTTTAGACGTGGTAGAGGAGGTCGAGAGCAAGGGCGCGGTAAAAGGTGGCAGAAAAAAGTGAGTAATCCCAAATCTGTTGCAAGTCGTCAGAACATTAGGGGTAATGAGAATTTGAATCAAGGGTTGAGAACGGTGGGAAAACGAACGCAGGGACAAGGGAGTGGACGGGGTCGCCGAACTGTTAGAAAGAGGAGAATGAAGAACAGGGCTGTTGAGGGGACACCTCTGGGCCGTGTGAGTGACATGCGCAGCAGCCCTGAGAGTGGAGGAGAATCACCAAGAAACTTGGCTGAGGAATGGGATGATGAAAAGATCGATATGAGAGGTGACGAGCAAGGAGAGGGATTTGAACGAGTAGACGCATTGGAATCAGAAGACGACGACCAAGCAGTGGGATACGAACAAGGAAACTGGGAAATTGGATTTGATGGGACTTCCAGCGGATGGAACGGGGGTTTAGTAGAAGCTAGTGACGACGATATAGATGCTTCAGAAGATGACAATAATGTCATGGAAGAAGTGAGAGATGAAGATTCAGAAGGGGATGTAGATATGAGCGATGCCTCGGACGAAATGCTACCAAACACGATGAGAAACGATGATGGCACAGAATCGGAAAGTTCAGACGACTCTAGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000981 GO:0000982 GO:0000987 GO:0001012 GO:0001067 GO:0001077 GO:0001227 GO:0001228 GO:0001525 GO:0001568 GO:0001944 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009791 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0035239 GO:0035295 GO:0040034 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048506 GO:0048509 GO:0048510 GO:0048514 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072358 GO:0072359 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1990837 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDT HARE-HTH Homeobox WHIM1 WSD

Protein Analysis

1761

Amino Acids

197.83

Weight (kDa)

5.31

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 29 - 85 8.4e-17 Homeodomain
DDT PF02791 549 - 603 2.9e-20 DDT domain
HARE-HTH PF05066 728 - 796 4.2e-18 HB1, ASXL, restriction endonuclease HTH domain
WHIM1 PF15612 947 - 991 3e-07 WSTF, HB1, Itc1p, MBD9 motif 1
WSD PF15613 1129 - 1202 4.6e-22 Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011708)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28420
fragaria_vesca FvH4_3g08620
malus_domestica MD05G1310200.v1.1 MD10G1289100.v1.1
prunus_persica Prupe.4G052600_v2.0.a1
pyrus_communis pycom05g28660 pycom10g24170
rosa_chinensis RchiOBHm_Chr5g0009221
rosa_laevigata RLG00000031635 RLG00000031641
rosa_multiflora Rmu_sc0006233.1_g000030
rosa_roxburghii Rroxscaffold_1G00066840 Rroxscaffold_1G00067540
rosa_rugosa Rorug04G0441600
rosa_samantha Rh5AG071400 Rh5BG067900 Rh5CG080200 Rh5DG067900
rosa_wichuraiana Rw5G006670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1018
AasI GACNNNNNNGTC 2 cut(s) 157, 5147
Acc16I TGCGCA 1 cut(s) 4889
Acc36I ACCTGC 1 cut(s) 1018
AccB1I GGYRCC 1 cut(s) 592
AccB7I CCANNNNNTGG 3 cut(s) 637, 5032, 5085
AccI GTMKAC 1 cut(s) 4998
AccII CGCG 6 cut(s) 395, 1263, 3334, 3564, 4371, 4677
AccIII TCCGGA 1 cut(s) 1137
AcoI YGGCCR 1 cut(s) 4122
AcsI RAATTY 5 cut(s) 2445, 3477, 4030, 4090, 4750
AcvI CACGTG 1 cut(s) 872
AcyI GRCGYC 1 cut(s) 11
AdeI CACNNNGTG 1 cut(s) 3218
AfaI GTAC 6 cut(s) 2382, 2797, 3105, 4108, 4401, 4615
AflII CTTAAG 2 cut(s) 1945, 2999
AflIII ACRYGT 2 cut(s) 871, 4048
AgeI ACCGGT 1 cut(s) 2169
AhdI GACNNNNNGTC 1 cut(s) 4306
AjiI CACGTC 1 cut(s) 4649
AjnI CCWGG 5 cut(s) 1870, 2179, 2435, 3463, 4357
AjuI GAANNNNNNNTTGG 4 cut(s) 2729, 2761, 3042, 3074
AleI CACNNNNGTG 1 cut(s) 965
Alw21I GWGCWC 2 cut(s) 489, 2214
Alw26I GTCTC 8 cut(s) 143, 760, 891, 1216, 2526, 4277, 4534, 4556
AlwNI CAGNNNCTG 1 cut(s) 3182
Ama87I CYCGRG 3 cut(s) 551, 1700, 2969
Aor13HI TCCGGA 1 cut(s) 1137
ApoI RAATTY 5 cut(s) 2445, 3477, 4030, 4090, 4750
AseI ATTAAT 2 cut(s) 1050, 1478
AsiGI ACCGGT 1 cut(s) 2169
Asp700I GAANNNNTTC 4 cut(s) 1368, 2098, 4182, 4260
AspA2I CCTAGG 1 cut(s) 1586
AspLEI GCGC 6 cut(s) 96, 1015, 3336, 3778, 4677, 4890
AsuC2I CCSGG 2 cut(s) 342, 373
AsuHPI GGTGA 6 cut(s) 2858, 3260, 4055, 4610, 4908, 4979
AvaI CYCGRG 3 cut(s) 551, 1700, 2969
AvaII GGWCC 5 cut(s) 263, 357, 2284, 3255, 3390
AvrII CCTAGG 1 cut(s) 1586
BaeGI GKGCMC 2 cut(s) 595, 912
BalI TGGCCA 1 cut(s) 4124
BamHI GGATCC 3 cut(s) 1134, 2401, 4388
BanI GGYRCC 1 cut(s) 592
BanII GRGCYC 4 cut(s) 309, 489, 4346, 4497
BauI CACGAG 1 cut(s) 2054
BbrPI CACGTG 1 cut(s) 872
BbsI GAAGAC 4 cut(s) 110, 872, 2544, 5022
Bbv12I GWGCWC 2 cut(s) 489, 2214
BbvCI CCTCAGC 4 cut(s) 2415, 2891, 3259, 4932
BccI CCATC 9 cut(s) 533, 782, 926, 2599, 3085, 4011, 5063, 5079, 5237
BceAI ACGGC 2 cut(s) 3142, 4857
BcgI CGANNNNNNTGC 4 cut(s) 789, 823, 5108, 5142
BciT130I CCWGG 5 cut(s) 1872, 2181, 2437, 3465, 4359
BciVI GTATCC 2 cut(s) 4404, 5030
BcnI CCSGG 2 cut(s) 342, 373
BcoDI GTCTC 8 cut(s) 143, 760, 891, 1216, 2526, 4277, 4534, 4556
BfmI CTRYAG 6 cut(s) 2103, 2430, 2475, 3183, 4287, 4425
BfoI RGCGCY 1 cut(s) 97
BfrI CTTAAG 2 cut(s) 1945, 2999
BfuAI ACCTGC 1 cut(s) 1018
BfuI GTATCC 2 cut(s) 4404, 5030
BglII AGATCT 2 cut(s) 2159, 2248
BlnI CCTAGG 1 cut(s) 1586
BlpI GCTNAGC 2 cut(s) 177, 4491
BmcAI AGTACT 1 cut(s) 4615
Bme1390I CCNGG 7 cut(s) 342, 373, 1872, 2181, 2437, 3465, 4359
Bme18I GGWCC 5 cut(s) 263, 357, 2284, 3255, 3390
BmeRI GACNNNNNGTC 1 cut(s) 4306
BmeT110I CYCGRG 3 cut(s) 551, 1700, 2969
BmgBI CACGTC 1 cut(s) 4649
BmrFI CCNGG 7 cut(s) 342, 373, 1872, 2181, 2437, 3465, 4359
BmrI ACTGGG 1 cut(s) 5062
BmuI ACTGGG 1 cut(s) 5062
BpiI GAAGAC 4 cut(s) 110, 872, 2544, 5022
BpmI CTGGAG 6 cut(s) 709, 1169, 1893, 3135, 3159, 3526
Bpu10I CCTNAGC 6 cut(s) 303, 488, 2415, 2891, 3259, 4932
Bpu1102I GCTNAGC 2 cut(s) 177, 4491
BpuEI CTTGAG 7 cut(s) 149, 1430, 1810, 2240, 3859, 4121, 4469
BpuMI CCSGG 2 cut(s) 342, 373
Bsa29I ATCGAT 2 cut(s) 3424, 4956
BsaAI YACGTR 1 cut(s) 872
BsaBI GATNNNNATC 1 cut(s) 2562
BsaHI GRCGYC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 3 cut(s) 359, 1137, 2169
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 2169
Bse3DI GCAATG 3 cut(s) 495, 2674, 4064
Bse8I GATNNNNATC 1 cut(s) 2562
BseAI TCCGGA 1 cut(s) 1137
BseBI CCWGG 5 cut(s) 1872, 2181, 2437, 3465, 4359
BseCI ATCGAT 2 cut(s) 3424, 4956
BseJI GATNNNNATC 1 cut(s) 2562
BseMI GCAATG 3 cut(s) 495, 2674, 4064
BseRI GAGGAG 7 cut(s) 466, 1183, 2710, 3386, 4671, 4846, 4923
BseSI GKGCMC 2 cut(s) 595, 912
BseYI CCCAGC 1 cut(s) 4339
BsgI GTGCAG 5 cut(s) 1389, 1407, 1616, 2805, 3768
Bsh1236I CGCG 6 cut(s) 395, 1263, 3334, 3564, 4371, 4677
Bsh1285I CGRYCG 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 592
BshTI ACCGGT 1 cut(s) 2169
BshVI ATCGAT 2 cut(s) 3424, 4956
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 2 cut(s) 489, 2214
BsiHKCI CYCGRG 3 cut(s) 551, 1700, 2969
BsiSI CCGG 5 cut(s) 341, 360, 372, 1138, 2170
BslFI GGGAC 8 cut(s) 965, 2247, 2297, 3120, 3376, 4806, 4873, 5086
BsmAI GTCTC 8 cut(s) 143, 760, 891, 1216, 2526, 4277, 4534, 4556
BsmBI CGTCTC 2 cut(s) 1216, 2526
BsmFI GGGAC 8 cut(s) 965, 2247, 2297, 3120, 3376, 4806, 4873, 5086
BsmI GAATGC 5 cut(s) 1556, 1577, 2744, 3884, 4240
Bso31I GGTCTC 1 cut(s) 143
BsoBI CYCGRG 3 cut(s) 551, 1700, 2969
Bsp1286I GDGCHC 7 cut(s) 309, 489, 595, 912, 2214, 4346, 4497
Bsp13I TCCGGA 1 cut(s) 1137
Bsp1720I GCTNAGC 2 cut(s) 177, 4491
Bsp19I CCATGG 4 cut(s) 856, 1625, 3205, 3279
Bsp68I TCGCGA 1 cut(s) 4371
BspDI ATCGAT 2 cut(s) 3424, 4956
BspEI TCCGGA 1 cut(s) 1137
BspFNI CGCG 6 cut(s) 395, 1263, 3334, 3564, 4371, 4677
BspHI TCATGA 4 cut(s) 40, 658, 1123, 1744
BspMAI CTGCAG 6 cut(s) 2107, 2434, 2479, 3187, 4291, 4429
BspMI ACCTGC 1 cut(s) 1018
BspQI GCTCTTC 3 cut(s) 1359, 2895, 4188
BspT107I GGYRCC 1 cut(s) 592
BspTI CTTAAG 2 cut(s) 1945, 2999
BspTNI GGTCTC 1 cut(s) 143
BsrDI GCAATG 3 cut(s) 495, 2674, 4064
BsrFI RCCGGY 1 cut(s) 2169
BssAI RCCGGY 1 cut(s) 2169
BssNI GRCGYC 1 cut(s) 11
BssSI CACGAG 1 cut(s) 2054
BssT1I CCWWGG 9 cut(s) 686, 856, 1586, 1625, 3205, 3279, 4085, 4119, 4406
Bst2BI CACGAG 1 cut(s) 2054
Bst2UI CCWGG 5 cut(s) 1872, 2181, 2437, 3465, 4359
Bst6I CTCTTC 8 cut(s) 1230, 1263, 1359, 2895, 3045, 3519, 4119, 4188
BstACI GRCGYC 1 cut(s) 11
BstAFI CTTAAG 2 cut(s) 1945, 2999
BstAPI GCANNNNNTGC 3 cut(s) 907, 1991, 3755
BstBAI YACGTR 1 cut(s) 872
BstC8I GCNNGC 9 cut(s) 86, 545, 1426, 1430, 1434, 3562, 3661, 4482, 4582
BstDSI CCRYGG 4 cut(s) 856, 1625, 3205, 3279
BstEII GGTNACC 1 cut(s) 1652
BstENI CCTNNNNNAGG 2 cut(s) 3468, 3841
BstFNI CGCG 6 cut(s) 395, 1263, 3334, 3564, 4371, 4677
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 6 cut(s) 96, 1015, 3336, 3778, 4677, 4890
BstMAI GTCTC 8 cut(s) 143, 760, 891, 1216, 2526, 4277, 4534, 4556
BstMCI CGRYCG 1 cut(s) 208
BstNI CCWGG 5 cut(s) 1872, 2181, 2437, 3465, 4359
BstNSI RCATGY 2 cut(s) 4052, 4888
BstPI GGTNACC 1 cut(s) 1652
BstSCI CCNGG 7 cut(s) 340, 371, 1870, 2179, 2435, 3463, 4357
BstSFI CTRYAG 6 cut(s) 2103, 2430, 2475, 3183, 4287, 4425
BstSLI GKGCMC 2 cut(s) 595, 912
BstUI CGCG 6 cut(s) 395, 1263, 3334, 3564, 4371, 4677
BstV2I GAAGAC 4 cut(s) 110, 872, 2544, 5022
BstX2I RGATCY 7 cut(s) 1134, 1773, 2159, 2248, 2401, 2563, 4388
BstYI RGATCY 7 cut(s) 1134, 1773, 2159, 2248, 2401, 2563, 4388
Bsu15I ATCGAT 2 cut(s) 3424, 4956
BsuI GTATCC 2 cut(s) 4404, 5030
BsuTUI ATCGAT 2 cut(s) 3424, 4956
BtgI CCRYGG 4 cut(s) 856, 1625, 3205, 3279
BtgZI GCGATG 2 cut(s) 3966, 5214
BtrI CACGTC 1 cut(s) 4649
BtsI GCAGTG 7 cut(s) 943, 3180, 3988, 4296, 4329, 4422, 5037
BtuMI TCGCGA 1 cut(s) 4371
BveI ACCTGC 1 cut(s) 1018
Cac8I GCNNGC 9 cut(s) 86, 545, 1426, 1430, 1434, 3562, 3661, 4482, 4582
CaiI CAGNNNCTG 1 cut(s) 3182
CciI TCATGA 4 cut(s) 40, 658, 1123, 1744
CfoI GCGC 6 cut(s) 96, 1015, 3336, 3778, 4677, 4890
Cfr10I RCCGGY 1 cut(s) 2169
ClaI ATCGAT 2 cut(s) 3424, 4956
CseI GACGC 6 cut(s) 644, 855, 2301, 2894, 3566, 5009
Csp6I GTAC 6 cut(s) 2381, 2796, 3104, 4107, 4400, 4614
CspAI ACCGGT 1 cut(s) 2169
CviQI GTAC 6 cut(s) 2381, 2796, 3104, 4107, 4400, 4614
DraIII CACNNNGTG 1 cut(s) 3218
DrdI GACNNNNNNGTC 2 cut(s) 157, 5147
DriI GACNNNNNGTC 1 cut(s) 4306
DseDI GACNNNNNNGTC 2 cut(s) 157, 5147
EaeI YGGCCR 1 cut(s) 4122
Eam1104I CTCTTC 8 cut(s) 1230, 1263, 1359, 2895, 3045, 3519, 4119, 4188
Eam1105I GACNNNNNGTC 1 cut(s) 4306
EarI CTCTTC 8 cut(s) 1230, 1263, 1359, 2895, 3045, 3519, 4119, 4188
Ecl136II GAGCTC 1 cut(s) 487
Eco130I CCWWGG 9 cut(s) 686, 856, 1586, 1625, 3205, 3279, 4085, 4119, 4406
Eco147I AGGCCT 2 cut(s) 3530, 4584
Eco24I GRGCYC 4 cut(s) 309, 489, 4346, 4497
Eco31I GGTCTC 1 cut(s) 143
Eco32I GATATC 1 cut(s) 3274
Eco47I GGWCC 5 cut(s) 263, 357, 2284, 3255, 3390
Eco53kI GAGCTC 1 cut(s) 487
Eco72I CACGTG 1 cut(s) 872
Eco88I CYCGRG 3 cut(s) 551, 1700, 2969
Eco91I GGTNACC 1 cut(s) 1652
EcoICRI GAGCTC 1 cut(s) 487
EcoNI CCTNNNNNAGG 2 cut(s) 3468, 3841
EcoO109I RGGNCCY 3 cut(s) 2284, 3255, 3390
EcoO65I GGTNACC 1 cut(s) 1652
EcoRII CCWGG 5 cut(s) 1870, 2179, 2435, 3463, 4357
EcoRV GATATC 1 cut(s) 3274
EcoT14I CCWWGG 9 cut(s) 686, 856, 1586, 1625, 3205, 3279, 4085, 4119, 4406
EcoT38I GRGCYC 4 cut(s) 309, 489, 4346, 4497
ErhI CCWWGG 9 cut(s) 686, 856, 1586, 1625, 3205, 3279, 4085, 4119, 4406
Esp3I CGTCTC 2 cut(s) 1216, 2526
FalI AAGNNNNNCTT 6 cut(s) 95, 127, 1392, 1424, 4286, 4318
FaqI GGGAC 8 cut(s) 965, 2247, 2297, 3120, 3376, 4806, 4873, 5086
FauI CCCGC 2 cut(s) 552, 3557
FauNDI CATATG 3 cut(s) 139, 3316, 4471
FblI GTMKAC 1 cut(s) 4998
FriOI GRGCYC 4 cut(s) 309, 489, 4346, 4497
FspI TGCGCA 1 cut(s) 4889
GlaI GCGC 6 cut(s) 95, 1014, 3335, 3777, 4676, 4889
GsaI CCCAGC 1 cut(s) 4343
GsuI CTGGAG 6 cut(s) 709, 1169, 1893, 3135, 3159, 3526
HaeII RGCGCY 1 cut(s) 97
HapII CCGG 5 cut(s) 341, 360, 372, 1138, 2170
HgaI GACGC 6 cut(s) 644, 855, 2301, 2894, 3566, 5009
HhaI GCGC 6 cut(s) 96, 1015, 3336, 3778, 4677, 4890
Hin1I GRCGYC 1 cut(s) 11
Hin6I GCGC 6 cut(s) 94, 1013, 3334, 3776, 4675, 4888
HinP1I GCGC 6 cut(s) 94, 1013, 3334, 3776, 4675, 4888
HincII GTYRAC 2 cut(s) 1979, 2175
HindII GTYRAC 2 cut(s) 1979, 2175
HindIII AAGCTT 1 cut(s) 2345
HpaII CCGG 5 cut(s) 341, 360, 372, 1138, 2170
HphI GGTGA 6 cut(s) 2858, 3260, 4055, 4610, 4908, 4979
Hpy99I CGWCG 5 cut(s) 16, 163, 4212, 5024, 5120
HpyCH4IV ACGT 6 cut(s) 871, 966, 1294, 3548, 4142, 4648
HpySE526I ACGT 6 cut(s) 871, 966, 1294, 3548, 4142, 4648
Hsp92I GRCGYC 1 cut(s) 11
HspAI GCGC 6 cut(s) 94, 1013, 3334, 3776, 4675, 4888
Kpn2I TCCGGA 1 cut(s) 1137
LguI GCTCTTC 3 cut(s) 1359, 2895, 4188
MaeII ACGT 6 cut(s) 871, 966, 1294, 3548, 4142, 4648
MfeI CAATTG 4 cut(s) 515, 783, 3964, 4187
MflI RGATCY 7 cut(s) 1134, 1773, 2159, 2248, 2401, 2563, 4388
MhlI GDGCHC 7 cut(s) 309, 489, 595, 912, 2214, 4346, 4497
MlsI TGGCCA 1 cut(s) 4124
MluNI TGGCCA 1 cut(s) 4124
MmeI TCCRAC 5 cut(s) 141, 802, 2656, 4059, 4571
Mox20I TGGCCA 1 cut(s) 4124
MroI TCCGGA 1 cut(s) 1137
MroXI GAANNNNTTC 4 cut(s) 1368, 2098, 4182, 4260
MscI TGGCCA 1 cut(s) 4124
MslI CAYNNNNRTG 4 cut(s) 440, 861, 965, 1749
Msp20I TGGCCA 1 cut(s) 4124
MspA1I CMGCKG 7 cut(s) 280, 2011, 2108, 3028, 3937, 4430, 5082
MspCI CTTAAG 2 cut(s) 1945, 2999
MspI CCGG 5 cut(s) 341, 360, 372, 1138, 2170
MspR9I CCNGG 7 cut(s) 342, 373, 1872, 2181, 2437, 3465, 4359
MunI CAATTG 4 cut(s) 515, 783, 3964, 4187
Mva1269I GAATGC 5 cut(s) 1556, 1577, 2744, 3884, 4240
MvaI CCWGG 5 cut(s) 1872, 2181, 2437, 3465, 4359
MvnI CGCG 6 cut(s) 395, 1263, 3334, 3564, 4371, 4677
NciI CCSGG 2 cut(s) 342, 373
NcoI CCATGG 4 cut(s) 856, 1625, 3205, 3279
NdeI CATATG 3 cut(s) 139, 3316, 4471
NmuCI GTSAC 9 cut(s) 230, 389, 867, 3178, 3210, 4324, 4880, 4967, 5111
NruI TCGCGA 1 cut(s) 4371
NsbI TGCGCA 1 cut(s) 4889
NspI RCATGY 2 cut(s) 4052, 4888
OliI CACNNNNGTG 1 cut(s) 965
PaeR7I CTCGAG 2 cut(s) 1700, 2969
PagI TCATGA 4 cut(s) 40, 658, 1123, 1744
PaqCI CACCTGC 1 cut(s) 1018
PceI AGGCCT 2 cut(s) 3530, 4584
PciI ACATGT 1 cut(s) 4048
PciSI GCTCTTC 3 cut(s) 1359, 2895, 4188
PcsI WCGNNNNNNNCGW 2 cut(s) 473, 4813
PctI GAATGC 5 cut(s) 1556, 1577, 2744, 3884, 4240
PdmI GAANNNNTTC 4 cut(s) 1368, 2098, 4182, 4260
PflFI GACNNNGTC 1 cut(s) 4809
PflMI CCANNNNNTGG 3 cut(s) 637, 5032, 5085
PfoI TCCNGGA 2 cut(s) 1870, 2179
PinAI ACCGGT 1 cut(s) 2169
Ple19I CGATCG 1 cut(s) 208
PmaCI CACGTG 1 cut(s) 872
PmlI CACGTG 1 cut(s) 872
Ppu21I YACGTR 1 cut(s) 872
PpuMI RGGWCCY 3 cut(s) 2284, 3255, 3390
PscI ACATGT 1 cut(s) 4048
PshBI ATTAAT 2 cut(s) 1050, 1478
Psp124BI GAGCTC 1 cut(s) 489
Psp5II RGGWCCY 3 cut(s) 2284, 3255, 3390
Psp6I CCWGG 5 cut(s) 1870, 2179, 2435, 3463, 4357
PspCI CACGTG 1 cut(s) 872
PspEI GGTNACC 1 cut(s) 1652
PspFI CCCAGC 1 cut(s) 4339
PspGI CCWGG 5 cut(s) 1870, 2179, 2435, 3463, 4357
PspPPI RGGWCCY 3 cut(s) 2284, 3255, 3390
PstI CTGCAG 6 cut(s) 2107, 2434, 2479, 3187, 4291, 4429
PstNI CAGNNNCTG 1 cut(s) 3182
PsuI RGATCY 7 cut(s) 1134, 1773, 2159, 2248, 2401, 2563, 4388
PsyI GACNNNGTC 1 cut(s) 4809
PvuI CGATCG 1 cut(s) 208
PvuII CAGCTG 4 cut(s) 2011, 2108, 3028, 4430
RruI TCGCGA 1 cut(s) 4371
RsaI GTAC 6 cut(s) 2382, 2797, 3105, 4108, 4401, 4615
RsaNI GTAC 6 cut(s) 2381, 2796, 3104, 4107, 4400, 4614
RseI CAYNNNNRTG 4 cut(s) 440, 861, 965, 1749
SacI GAGCTC 1 cut(s) 489
SapI GCTCTTC 3 cut(s) 1359, 2895, 4188
ScaI AGTACT 1 cut(s) 4615
ScrFI CCNGG 7 cut(s) 342, 373, 1872, 2181, 2437, 3465, 4359
SduI GDGCHC 7 cut(s) 309, 489, 595, 912, 2214, 4346, 4497
SfcI CTRYAG 6 cut(s) 2103, 2430, 2475, 3183, 4287, 4425
Sfr274I CTCGAG 2 cut(s) 1700, 2969
SinI GGWCC 5 cut(s) 263, 357, 2284, 3255, 3390
SlaI CTCGAG 2 cut(s) 1700, 2969
SmiMI CAYNNNNRTG 4 cut(s) 440, 861, 965, 1749
SseBI AGGCCT 2 cut(s) 3530, 4584
SspI AATATT 3 cut(s) 1648, 1971, 2454
SstI GAGCTC 1 cut(s) 489
StuI AGGCCT 2 cut(s) 3530, 4584
StyD4I CCNGG 7 cut(s) 340, 371, 1870, 2179, 2435, 3463, 4357
StyI CCWWGG 9 cut(s) 686, 856, 1586, 1625, 3205, 3279, 4085, 4119, 4406
TaiI ACGT 6 cut(s) 874, 969, 1297, 3551, 4145, 4651
TaqII GACCGA 1 cut(s) 723
TatI WGTACW 5 cut(s) 2795, 3103, 4106, 4399, 4613
TauI GCSGC 3 cut(s) 11, 296, 577
TseFI GTSAC 9 cut(s) 230, 389, 867, 3178, 3210, 4324, 4880, 4967, 5111
Tsp45I GTSAC 9 cut(s) 230, 389, 867, 3178, 3210, 4324, 4880, 4967, 5111
TspGWI ACGGA 5 cut(s) 762, 1942, 1964, 4343, 4381
Tth111I GACNNNGTC 1 cut(s) 4809
Van91I CCANNNNNTGG 3 cut(s) 637, 5032, 5085
Vha464I CTTAAG 2 cut(s) 1945, 2999
VpaK11BI GGWCC 5 cut(s) 263, 357, 2284, 3255, 3390
VspI ATTAAT 2 cut(s) 1050, 1478
XagI CCTNNNNNAGG 2 cut(s) 3468, 3841
XapI RAATTY 5 cut(s) 2445, 3477, 4030, 4090, 4750
XbaI TCTAGA 1 cut(s) 2162
XceI RCATGY 2 cut(s) 4052, 4888
XcmI CCANNNNNNNNNTGG 3 cut(s) 319, 502, 4429
XhoI CTCGAG 2 cut(s) 1700, 2969
XmaJI CCTAGG 1 cut(s) 1586
XmiI GTMKAC 1 cut(s) 4998
XmnI GAANNNNTTC 4 cut(s) 1368, 2098, 4182, 4260
ZrmI AGTACT 1 cut(s) 4615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.