Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Reverse (-)

10183390 .. 10184512

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCGACCCAAGATTCTCAAGGGATTAAACTCTTTGGCAAAACCATAACATTCAACGCCAACATCACACAGACGATAAAAAAAGAAGAGCAGCAACAACAACAACAGCCAGAGCTACAAGCAACAACAGCCGTTAGATCACCCTCATCGGATCTGACGGCTGAGAAGCGTCCAGACAAGATCATACCATGTCCGAGATGCAAGAGCATGGAGACTAAGTTTTGTTACTTCAACAACTACAACGTTAATCAACCAAGACACTTCTGCAAAGGTTGTCAACGTTACTGGACCGCCGGTGGAGCTCTCCGGAATGTTCCCGTCGGTGCCGGTCGTCGGAAGTCAAAACCTCCCGGACGTGTCGGTGGGTTCGCTGAGTTGCTTGGAGCTGCGACTGGAGCTGTTGATCAGGTCGAGCTAGATGCTTTGCTAGTGGAAGAGTGGAGAGCTGCTACGGCGTCTCACGGTGGTTTCCGGCATGATTTTCCGGTGAAGAGGCTCCGTTGTTACACCGATGGTCAATCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048316 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051172 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902455 GO:1902679 GO:1903506 GO:1903507 GO:2000036 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

175

Amino Acids

19.42

Weight (kDa)

9.37

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	60 - 115	9.8e-33	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	323
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	1 cut(s)	291
AclI	AACGTT	2 cut(s)	243, 280
AclWI	GGATC	1 cut(s)	159
AcyI	GRCGYC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	55, 232
AjiI	CACGTC	1 cut(s)	356
AluBI	AGCT	6 cut(s)	115, 302, 386, 398, 415, 446
AluI	AGCT	6 cut(s)	115, 302, 386, 398, 415, 446
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	206, 462
AlwI	GGATC	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	306
ApeKI	GCWGC	3 cut(s)	91, 386, 446
AspS9I	GGNCC	1 cut(s)	288
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	2 cut(s)	132, 499
AvaII	GGWCC	1 cut(s)	288
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	103, 373, 433
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	3 cut(s)	116, 174, 468
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BclI	TGATCA	1 cut(s)	403
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	206, 462
BfaI	CTAG	2 cut(s)	416, 428
BisI	GCNGC	3 cut(s)	92, 387, 447
BlsI	GCNGC	3 cut(s)	93, 388, 448
Bme1390I	CCNGG	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	325, 497
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	2 cut(s)	188, 409
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	1 cut(s)	351
BsaHI	GRCGYC	1 cut(s)	455
BsaWI	WCCGGW	2 cut(s)	306, 484
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse118I	RCCGGY	2 cut(s)	293, 326
Bse1I	ACTGG	2 cut(s)	290, 397
BseAI	TCCGGA	1 cut(s)	306
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	153, 363
BseNI	ACTGG	2 cut(s)	290, 397
BseXI	GCAGC	3 cut(s)	103, 373, 433
Bsh1285I	CGRYCG	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	6 cut(s)	294, 307, 327, 351, 472, 485
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	2 cut(s)	206, 462
BsmBI	CGTCTC	1 cut(s)	462
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	137, 151, 180, 403
BspACI	CCGC	1 cut(s)	291
BspCNI	CTCAG	2 cut(s)	154, 364
BspEI	TCCGGA	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	325, 497
BspPI	GGATC	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	323
BsrFI	RCCGGY	2 cut(s)	293, 326
BsrI	ACTGG	2 cut(s)	290, 397
BssAI	RCCGGY	2 cut(s)	293, 326
BssMI	GATC	4 cut(s)	137, 151, 180, 403
BssNI	GRCGYC	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	464
Bst6I	CTCTTC	3 cut(s)	81, 429, 485
BstACI	GRCGYC	1 cut(s)	455
BstDEI	CTNAG	3 cut(s)	162, 216, 372
BstKTI	GATC	4 cut(s)	140, 154, 183, 406
BstMAI	GTCTC	2 cut(s)	206, 462
BstMBI	GATC	4 cut(s)	137, 151, 180, 403
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 299, 395, 452
BstSCI	CCNGG	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	103, 373, 433
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	356
Cfr10I	RCCGGY	2 cut(s)	293, 326
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	2 cut(s)	158, 444
CviAII	CATG	3 cut(s)	189, 208, 476
DdeI	CTNAG	3 cut(s)	162, 216, 372
DpnI	GATC	4 cut(s)	139, 153, 182, 405
DpnII	GATC	4 cut(s)	137, 151, 180, 403
Eam1104I	CTCTTC	3 cut(s)	81, 429, 485
EarI	CTCTTC	3 cut(s)	81, 429, 485
Ecl136II	GAGCTC	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	288
Eco53kI	GAGCTC	1 cut(s)	302
EcoICRI	GAGCTC	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	304
Esp3I	CGTCTC	1 cut(s)	462
FaeI	CATG	3 cut(s)	192, 211, 479
FaiI	YATR	5 cut(s)	47, 185, 190, 209, 477
FatI	CATG	3 cut(s)	188, 207, 475
FbaI	TGATCA	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	92, 387, 447
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	92, 387, 447
FspBI	CTAG	2 cut(s)	416, 428
GluI	GCNGC	3 cut(s)	92, 387, 447
GsuI	CTGGAG	1 cut(s)	414
HapII	CCGG	6 cut(s)	294, 307, 327, 351, 472, 485
HgaI	GACGC	2 cut(s)	158, 444
Hin1I	GRCGYC	1 cut(s)	455
Hin1II	CATG	3 cut(s)	192, 211, 479
HincII	GTYRAC	1 cut(s)	278
HindII	GTYRAC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	14
HpaII	CCGG	6 cut(s)	294, 307, 327, 351, 472, 485
HphI	GGTGA	2 cut(s)	132, 499
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	4 cut(s)	151, 156, 195, 336
Hpy188III	TCNNGA	2 cut(s)	173, 307
Hpy8I	GTNNAC	1 cut(s)	278
Hpy99I	CGWCG	2 cut(s)	323, 336
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4IV	ACGT	3 cut(s)	243, 280, 355
HpyCH4V	TGCA	2 cut(s)	201, 267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 299, 395, 452
HpyF3I	CTNAG	3 cut(s)	162, 216, 372
HpySE526I	ACGT	3 cut(s)	243, 280, 355
Hsp92I	GRCGYC	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	192, 211, 479
Kpn2I	TCCGGA	1 cut(s)	306
Ksp22I	TGATCA	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	137, 151, 180, 403
LguI	GCTCTTC	1 cut(s)	81
LmnI	GCTCC	4 cut(s)	299, 383, 395, 501
Lsp1109I	GCAGC	3 cut(s)	103, 373, 433
LweI	GCATC	2 cut(s)	188, 409
MaeI	CTAG	2 cut(s)	416, 428
MaeII	ACGT	3 cut(s)	243, 280, 355
MaeIII	GTNAC	3 cut(s)	224, 281, 503
MalI	GATC	4 cut(s)	139, 153, 182, 405
MboI	GATC	4 cut(s)	137, 151, 180, 403
MboII	GAAGA	3 cut(s)	98, 446, 502
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	304
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	3 cut(s)	154, 357, 486
MroI	TCCGGA	1 cut(s)	306
MseI	TTAA	3 cut(s)	27, 246, 526
MspI	CCGG	6 cut(s)	294, 307, 327, 351, 472, 485
MspR9I	CCNGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	4 cut(s)	128, 299, 395, 452
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	4 cut(s)	137, 151, 180, 403
NlaIII	CATG	3 cut(s)	192, 211, 479
NlaIV	GGNNCC	2 cut(s)	325, 497
PciSI	GCTCTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	93, 388, 448
Psp124BI	GAGCTC	1 cut(s)	304
Psp1406I	AACGTT	2 cut(s)	243, 280
PspN4I	GGNNCC	2 cut(s)	325, 497
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	3 cut(s)	27, 246, 526
SatI	GCNGC	3 cut(s)	92, 387, 447
Sau3AI	GATC	4 cut(s)	137, 151, 180, 403
Sau96I	GGNCC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	188, 409
SgrAI	CRCCGGYG	1 cut(s)	293
SinI	GGWCC	1 cut(s)	288
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	416, 428
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	1 cut(s)	349
TaaI	ACNGT	1 cut(s)	464
TaiI	ACGT	3 cut(s)	246, 283, 358
TaqI	TCGA	1 cut(s)	411
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	27, 246, 526
Tru9I	TTAA	3 cut(s)	27, 246, 526
TseI	GCWGC	3 cut(s)	91, 386, 446
TspGWI	ACGGA	1 cut(s)	488
VpaK11BI	GGWCC	1 cut(s)	288
XspI	CTAG	2 cut(s)	416, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.