Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Reverse (-)

11234807 .. 11235505

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGATAACTTCAATGTTGTTGCCAATGAAGACAATCAAGTGAATGATGTGAAGCCTCCACCACCCCCACCGCGAGTGTGTGCAAGATGTGATTCTGATAACACAAAATTTTGTTACTACAACAATTATAGTGAGTTTCAACCGCGCTACTTCTGCAAGAACTGTCGAAGATACTGGACTCATGGTGGGGCTTTAAGAAACGTACCAATTGGTGGGAGTAGTCGTGCCAAGCGGACAAGGATAAATCAACCTTCAGTTGCTCAGATGGTTTCTGTTGGAATCCAACCAGGTAGCCATAAACCTTTCTTTAATGTTCAAGAAAATAATGACTTTGTTGGATCTTTTGGTGCTTCATCTTCATCTTTTGTTGCTGCTGTAGGGAACCGTTTTAGTTCTTTGTCTCATATTCATGGTGGTATGGTAACAAATGTGCATCCAACTCAAACTTTTCGACCAAATCATCGCCTAGCTTTCCATAATGGATCATTTGAGCAAGATTATTATGATGTTGGGTCTGATAATCTTTTGGTAAACCAACAAGTTGGTGGATATGTTGATAATCACAACGGTTATCACATGAATCAAGTGGATCAATACAACTGGAACCAGAGCTTCAATAACGCTATGAACATGAATTATAATAACGCTAGCACTAGCGGAAGGATGCATCCTAGTCATTTAGAGAAGGGTGGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

232

Amino Acids

26.08

Weight (kDa)

8.59

Isoelectric Point (pI)

36.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	25 - 78	1.8e-30	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	639
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	2 cut(s)	73, 145
AciI	CCGC	4 cut(s)	71, 143, 232, 657
AclWI	GGATC	3 cut(s)	346, 490, 597
AcsI	RAATTY	1 cut(s)	107
AcuI	CTGAAG	1 cut(s)	237
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgsI	TTSAA	4 cut(s)	13, 140, 317, 616
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	2 cut(s)	470, 612
AluI	AGCT	2 cut(s)	470, 612
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	3 cut(s)	346, 490, 597
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	107
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	692
AsuNHI	GCTAGC	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	692
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	1 cut(s)	259
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	4 cut(s)	467, 648, 654, 672
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmiI	GGNNCC	2 cut(s)	383, 605
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	442, 654, 676
BmtI	GCTAGC	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	36
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse1I	ACTGG	2 cut(s)	179, 605
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	3 cut(s)	433, 667, 669
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	179, 605
BseXI	GCAGC	1 cut(s)	358
Bsh1236I	CGCG	2 cut(s)	73, 145
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	405
Bsp143I	GATC	3 cut(s)	338, 482, 589
BspACI	CCGC	4 cut(s)	71, 143, 232, 657
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	2 cut(s)	73, 145
BspLI	GGNNCC	2 cut(s)	383, 605
BspOI	GCTAGC	1 cut(s)	651
BspPI	GGATC	3 cut(s)	346, 490, 597
BsrI	ACTGG	2 cut(s)	179, 605
BssMI	GATC	3 cut(s)	338, 482, 589
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	164, 386, 569
BstC8I	GCNNGC	1 cut(s)	649
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	433, 667, 669
BstFNI	CGCG	2 cut(s)	73, 145
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	341, 485, 592
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	3 cut(s)	338, 482, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	153
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	375
BstUI	CGCG	2 cut(s)	73, 145
BstV1I	GCAGC	1 cut(s)	358
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	338
BstXI	CCANNNNNNTGG	1 cut(s)	542
BstYI	RGATCY	1 cut(s)	338
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	3 cut(s)	433, 667, 669
Cac8I	GCNNGC	1 cut(s)	649
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	692
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	4 cut(s)	182, 410, 577, 631
CviJI	RGCY	5 cut(s)	55, 191, 294, 470, 612
CviKI_1	RGCY	5 cut(s)	55, 191, 294, 470, 612
CviQI	GTAC	1 cut(s)	203
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	340, 484, 591
DpnII	GATC	3 cut(s)	338, 482, 589
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	669
FaeI	CATG	4 cut(s)	185, 413, 580, 634
FatI	CATG	4 cut(s)	181, 409, 576, 630
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	3 cut(s)	420, 654, 676
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	4 cut(s)	467, 648, 654, 672
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	1 cut(s)	372
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	185, 413, 580, 634
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	4 cut(s)	92, 178, 279, 580
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	3 cut(s)	97, 264, 517
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	1 cut(s)	532
HpyAV	CCTTC	3 cut(s)	261, 654, 679
HpyCH4III	ACNGT	3 cut(s)	164, 386, 569
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	4 cut(s)	83, 156, 433, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	153
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	185, 413, 580, 634
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	338, 482, 589
LpnPI	CCDG	5 cut(s)	160, 273, 300, 586, 620
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	3 cut(s)	442, 654, 676
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	4 cut(s)	467, 648, 654, 672
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	113, 421
MalI	GATC	3 cut(s)	340, 484, 591
MboI	GATC	3 cut(s)	338, 482, 589
MboII	GAAGA	3 cut(s)	41, 180, 348
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	1 cut(s)	338
MluCI	AATT	4 cut(s)	107, 124, 207, 634
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	4 cut(s)	256, 307, 316, 461
MnlI	CCTC	1 cut(s)	66
Mph1103I	ATGCAT	1 cut(s)	669
MseI	TTAA	2 cut(s)	194, 309
MslI	CAYNNNNRTG	1 cut(s)	408
MspR9I	CCNGG	1 cut(s)	288
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	73, 145
MwoI	GCNNNNNNNGC	1 cut(s)	153
NdeII	GATC	3 cut(s)	338, 482, 589
NheI	GCTAGC	1 cut(s)	647
NlaIII	CATG	4 cut(s)	185, 413, 580, 634
NlaIV	GGNNCC	2 cut(s)	383, 605
NsiI	ATGCAT	1 cut(s)	669
PfeI	GAWTC	3 cut(s)	92, 279, 580
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	383, 605
PspPI	GGNCC	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	338
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	408
SaqAI	TTAA	2 cut(s)	194, 309
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	3 cut(s)	338, 482, 589
Sau96I	GGNCC	1 cut(s)	692
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	288
SetI	ASST	6 cut(s)	204, 253, 292, 304, 472, 614
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	3 cut(s)	442, 654, 676
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	408
Sse9I	AATT	4 cut(s)	107, 124, 207, 634
SsiI	CCGC	4 cut(s)	71, 143, 232, 657
SspMI	CTAG	4 cut(s)	467, 648, 654, 672
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	164, 386, 569
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	166, 451
TasI	AATT	4 cut(s)	107, 124, 207, 634
TfiI	GAWTC	3 cut(s)	92, 279, 580
Tru1I	TTAA	2 cut(s)	194, 309
Tru9I	TTAA	2 cut(s)	194, 309
TseI	GCWGC	1 cut(s)	371
TspDTI	ATGAA	7 cut(s)	42, 342, 348, 398, 593, 641, 647
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	692
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XspI	CTAG	4 cut(s)	467, 648, 654, 672
Zsp2I	ATGCAT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.