Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

25561784 .. 25562784

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCATGGAGATTTCTCAAAAGCAAAAACAAGAAGCACTTTTACTTTATCGCTTTTTTTCTCCATAAACTTTTTTAGGCACTTTTATCCACTCTCCTCGATCTATAAATACATAACCACTTGCAGTAGCACACCACCTTTCCTTAAACCATCCAAAGTGTATGTCGCTCAAATCATAAATCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCTTTTGTATTGTTCTCTCTGTCAAAAAATTCCATGGCTCAGGTTCAAACCGGCCAAGATGTTCATGGAATTAAGCTTTTCGGGAAAACGATTACACTGCAGAACAGATCATCACAAGTAAAAGAAGAACCCAAAAAAGATGAACAAACGGTGGAGAAGCGGCCTGATTCCTTGAGATCGATCATACCATGCCCAAGATGCAAAAGCATGGAGACAAAATTTTGTTACTTTAATAACTACAATGTTAACCAGCCTAGGCACTTCTGTAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGGGCCCTACGGAACGTCCCCGTGGGGGCTGGTCGACGAAAAACTAAGCCGCCTTGTCGGGGGCTGGCCGGGTTACCGGAGGGTTGTATATATGAGAGTTCAGATGTGGTGCACCAGTTTGAGTTAGATGGGGTGGTGGAAGAGTGGCATGTGGCGGCGGCACAAGGCAGTTTTCACCAAGTTTTCCCGGTGGTGAAGAGGCGGAGGAGCGGCTCAGGTGGTCAACCATGCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

250

Amino Acids

27.97

Weight (kDa)

9.68

Isoelectric Point (pI)

45.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	133 - 187	9e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	723
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	7 cut(s)	376, 513, 563, 668, 671, 715, 723
AcoI	YGGCCR	3 cut(s)	268, 507, 579
AcsI	RAATTY	2 cut(s)	244, 434
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	538, 572
AgsI	TTSAA	1 cut(s)	263
AluBI	AGCT	3 cut(s)	218, 292, 747
AluI	AGCT	3 cut(s)	218, 292, 747
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	1 cut(s)	422
Alw44I	GTGCAC	1 cut(s)	623
AoxI	GGCC	5 cut(s)	268, 377, 507, 516, 579
ApaI	GGGCCC	1 cut(s)	520
ApaLI	GTGCAC	1 cut(s)	623
ApeKI	GCWGC	2 cut(s)	489, 744
ApoI	RAATTY	2 cut(s)	244, 434
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
AspA2I	CCTAGG	1 cut(s)	470
AspS9I	GGNCC	2 cut(s)	516, 517
AsuC2I	CCSGG	2 cut(s)	583, 701
AsuHPI	GGTGA	2 cut(s)	680, 718
AvrII	CCTAGG	1 cut(s)	470
BaeGI	GKGCMC	2 cut(s)	520, 627
BanII	GRGCYC	1 cut(s)	520
BarI	GAAGNNNNNNTAC	2 cut(s)	25, 57
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	157, 635
BceAI	ACGGC	1 cut(s)	522
BcgI	CGANNNNNNTGC	2 cut(s)	295, 329
BcnI	CCSGG	2 cut(s)	583, 701
BcoDI	GTCTC	1 cut(s)	422
BfaI	CTAG	2 cut(s)	215, 471
BfmI	CTRYAG	1 cut(s)	314
BglI	GCCNNNNNGGC	1 cut(s)	515
BisI	GCNGC	7 cut(s)	377, 490, 563, 669, 672, 724, 745
BlnI	CCTAGG	1 cut(s)	470
BlsI	GCNGC	7 cut(s)	378, 491, 564, 670, 673, 725, 746
Bme1390I	CCNGG	2 cut(s)	583, 701
BmgT120I	GGNCC	2 cut(s)	516, 517
BmiI	GGNNCC	2 cut(s)	517, 518
BmrFI	CCNGG	2 cut(s)	583, 701
BmsI	GCATC	1 cut(s)	404
Bpu10I	CCTNAGC	2 cut(s)	255, 727
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	2 cut(s)	583, 701
Bsa29I	ATCGAT	1 cut(s)	395
BsaJI	CCNNGG	3 cut(s)	249, 470, 534
BsaWI	WCCGGW	1 cut(s)	589
Bsc4I	CCNNNNNNNGG	2 cut(s)	538, 572
Bse118I	RCCGGY	2 cut(s)	266, 509
Bse1I	ACTGG	2 cut(s)	506, 628
BseCI	ATCGAT	1 cut(s)	395
BseDI	CCNNGG	3 cut(s)	249, 470, 534
BseGI	GGATG	1 cut(s)	149
BseLI	CCNNNNNNNGG	2 cut(s)	538, 572
BseMII	CTCAG	2 cut(s)	269, 741
BseNI	ACTGG	2 cut(s)	506, 628
BseRI	GAGGAG	2 cut(s)	85, 733
BseSI	GKGCMC	2 cut(s)	520, 627
BseX3I	CGGCCG	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	5 cut(s)	270, 379, 509, 518, 581
BshVI	ATCGAT	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	5 cut(s)	267, 510, 582, 590, 701
BslFI	GGGAC	1 cut(s)	515
BslI	CCNNNNNNNGG	2 cut(s)	538, 572
BsmAI	GTCTC	1 cut(s)	422
BsmFI	GGGAC	1 cut(s)	515
BsnI	GGCC	5 cut(s)	270, 379, 509, 518, 581
Bsp120I	GGGCCC	1 cut(s)	516
Bsp1286I	GDGCHC	2 cut(s)	520, 627
Bsp143I	GATC	4 cut(s)	99, 323, 392, 396
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	7 cut(s)	376, 513, 563, 668, 671, 715, 723
BspANI	GGCC	5 cut(s)	270, 379, 509, 518, 581
BspCNI	CTCAG	2 cut(s)	268, 740
BspDI	ATCGAT	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	517, 518
BspMAI	CTGCAG	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	723
BsrFI	RCCGGY	2 cut(s)	266, 509
BsrI	ACTGG	2 cut(s)	506, 628
BssAI	RCCGGY	2 cut(s)	266, 509
BssECI	CCNNGG	3 cut(s)	249, 470, 534
BssMI	GATC	4 cut(s)	99, 323, 392, 396
BssT1I	CCWWGG	2 cut(s)	249, 470
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	648, 704
BstC8I	GCNNGC	2 cut(s)	511, 579
BstDEI	CTNAG	3 cut(s)	255, 558, 727
BstDSI	CCRYGG	2 cut(s)	249, 534
BstEII	GGTNACC	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	149
BstKTI	GATC	4 cut(s)	102, 326, 395, 399
BstMAI	GTCTC	1 cut(s)	422
BstMBI	GATC	4 cut(s)	99, 323, 392, 396
BstMCI	CGRYCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 515
BstNSI	RCATGY	1 cut(s)	665
BstPI	GGTNACC	1 cut(s)	585
BstSCI	CCNGG	2 cut(s)	581, 699
BstSFI	CTRYAG	1 cut(s)	314
BstSLI	GKGCMC	2 cut(s)	520, 627
BstV1I	GCAGC	1 cut(s)	476
BstZI	CGGCCG	1 cut(s)	507
Bsu15I	ATCGAT	1 cut(s)	395
BsuRI	GGCC	5 cut(s)	270, 379, 509, 518, 581
BsuTUI	ATCGAT	1 cut(s)	395
BtgI	CCRYGG	2 cut(s)	249, 534
BtsCI	GGATG	1 cut(s)	149
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	511, 579
Cfr10I	RCCGGY	2 cut(s)	266, 509
Cfr13I	GGNCC	2 cut(s)	516, 517
ClaI	ATCGAT	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	7 cut(s)	5, 250, 281, 405, 424, 662, 741
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	3 cut(s)	255, 558, 727
DpnI	GATC	4 cut(s)	101, 325, 394, 398
DpnII	GATC	4 cut(s)	99, 323, 392, 396
EaeI	YGGCCR	3 cut(s)	268, 507, 579
EagI	CGGCCG	1 cut(s)	507
Eam1104I	CTCTTC	2 cut(s)	648, 704
EarI	CTCTTC	2 cut(s)	648, 704
EciI	GGCGGA	1 cut(s)	730
EclXI	CGGCCG	1 cut(s)	507
Eco130I	CCWWGG	2 cut(s)	249, 470
Eco24I	GRGCYC	1 cut(s)	520
Eco52I	CGGCCG	1 cut(s)	507
Eco91I	GGTNACC	1 cut(s)	585
EcoO109I	RGGNCCY	2 cut(s)	516, 517
EcoO65I	GGTNACC	1 cut(s)	585
EcoT14I	CCWWGG	2 cut(s)	249, 470
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	2 cut(s)	249, 470
FaeI	CATG	7 cut(s)	8, 253, 284, 408, 427, 665, 744
FalI	AAGNNNNNCTT	2 cut(s)	22, 54
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	7 cut(s)	4, 249, 280, 404, 423, 661, 740
FauI	CCCGC	1 cut(s)	506
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	7 cut(s)	377, 490, 563, 669, 672, 724, 745
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	7 cut(s)	377, 490, 563, 669, 672, 724, 745
FspBI	CTAG	2 cut(s)	215, 471
GluI	GCNGC	7 cut(s)	377, 490, 563, 669, 672, 724, 745
HaeIII	GGCC	5 cut(s)	270, 379, 509, 518, 581
HapII	CCGG	5 cut(s)	267, 510, 582, 590, 701
Hin1II	CATG	7 cut(s)	8, 253, 284, 408, 427, 665, 744
HincII	GTYRAC	3 cut(s)	463, 548, 737
HindII	GTYRAC	3 cut(s)	463, 548, 737
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	1 cut(s)	383
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	5 cut(s)	267, 510, 582, 590, 701
HphI	GGTGA	2 cut(s)	680, 718
Hpy166II	GTNNAC	4 cut(s)	463, 548, 625, 737
Hpy188I	TCNGA	1 cut(s)	616
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	4 cut(s)	463, 548, 625, 737
Hpy99I	CGWCG	1 cut(s)	552
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	1 cut(s)	528
HpyCH4V	TGCA	6 cut(s)	4, 123, 316, 417, 625, 744
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 515
HpyF3I	CTNAG	3 cut(s)	255, 558, 727
HpySE526I	ACGT	1 cut(s)	528
Hsp92II	CATG	7 cut(s)	8, 253, 284, 408, 427, 665, 744
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	99, 323, 392, 396
LmnI	GCTCC	1 cut(s)	720
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	1 cut(s)	404
MaeI	CTAG	2 cut(s)	215, 471
MaeII	ACGT	1 cut(s)	528
MaeIII	GTNAC	2 cut(s)	440, 585
MalI	GATC	4 cut(s)	101, 325, 394, 398
MbiI	CCGCTC	1 cut(s)	723
MboI	GATC	4 cut(s)	99, 323, 392, 396
MboII	GAAGA	3 cut(s)	353, 665, 721
MhlI	GDGCHC	2 cut(s)	520, 627
MluCI	AATT	3 cut(s)	244, 285, 434
MnlI	CCTC	5 cut(s)	106, 489, 586, 705, 711
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	509
MseI	TTAA	4 cut(s)	144, 288, 447, 462
MspA1I	CMGCKG	1 cut(s)	747
MspI	CCGG	5 cut(s)	267, 510, 582, 590, 701
MspR9I	CCNGG	2 cut(s)	583, 701
MwoI	GCNNNNNNNGC	2 cut(s)	414, 515
NaeI	GCCGGC	1 cut(s)	511
NciI	CCSGG	2 cut(s)	583, 701
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	4 cut(s)	99, 323, 392, 396
NgoMIV	GCCGGC	1 cut(s)	509
NlaIII	CATG	7 cut(s)	8, 253, 284, 408, 427, 665, 744
NlaIV	GGNNCC	2 cut(s)	517, 518
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	665
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	7 cut(s)	378, 491, 564, 670, 673, 725, 746
PspEI	GGTNACC	1 cut(s)	585
PspN4I	GGNNCC	2 cut(s)	517, 518
PspOMI	GGGCCC	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	516, 517
PstI	CTGCAG	1 cut(s)	318
PvuII	CAGCTG	1 cut(s)	747
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SalI	GTCGAC	1 cut(s)	546
SaqAI	TTAA	4 cut(s)	144, 288, 447, 462
SatI	GCNGC	7 cut(s)	377, 490, 563, 669, 672, 724, 745
Sau3AI	GATC	4 cut(s)	99, 323, 392, 396
Sau96I	GGNCC	2 cut(s)	516, 517
ScrFI	CCNGG	2 cut(s)	583, 701
SduI	GDGCHC	2 cut(s)	520, 627
SetI	ASST	8 cut(s)	139, 220, 261, 294, 500, 531, 733, 749
SfaNI	GCATC	1 cut(s)	404
SfcI	CTRYAG	1 cut(s)	314
SfiI	GGCCNNNNNGGCC	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	388
SmoI	CTYRAG	1 cut(s)	388
Sse9I	AATT	3 cut(s)	244, 285, 434
SsiI	CCGC	7 cut(s)	376, 513, 563, 668, 671, 715, 723
SspMI	CTAG	2 cut(s)	215, 471
StyD4I	CCNGG	2 cut(s)	581, 699
StyI	CCWWGG	2 cut(s)	249, 470
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	1 cut(s)	531
TaqI	TCGA	3 cut(s)	98, 395, 547
TasI	AATT	3 cut(s)	244, 285, 434
TauI	GCSGC	5 cut(s)	379, 565, 671, 674, 726
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	4 cut(s)	144, 288, 447, 462
Tru9I	TTAA	4 cut(s)	144, 288, 447, 462
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	2 cut(s)	489, 744
TspDTI	ATGAA	2 cut(s)	269, 372
TspGWI	ACGGA	1 cut(s)	538
TspRI	CASTG	1 cut(s)	318
VneI	GTGCAC	1 cut(s)	623
XapI	RAATTY	2 cut(s)	244, 434
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XmaJI	CCTAGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	2 cut(s)	215, 471
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.