Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

60698974 .. 60700888

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0452500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGACCTTTGCCGTTTCCGGTTTCGGTAATTTTCCCGCCAATCAGATACGAGCTTTGGCGCCAATTCACAAAGCAGCCTATGATCATATCATTAGGGTAAGAGGCCATTCCTTCGCCGTCGCTAATCCCAAGGGAGCAGCAATGGGTTCCAGAGCTGCCACCAAAAACAAAACCCTACTGGATATCTTCCAACCCACGACCCGATCCGCCAAACGCTTCAAAACCGATTCTTCCACCCCCAAATCCGATGACGCCATCACCGAGCCTTCTTCTTCTTCTTCTTCTCCGTCAGCCCTCACCCCCGAGCAGAAGTCACGCATAGAATTCCAGAAGCTGCTGGCCAAAGCGAAACGCAACCGCACTATCTGCTCCGGCAGAGTCTCCGATTCCAAGGCCAGAGGTGAAGGAGTGAAATTGGAGGAGCTATTGGTGGAGGACACGTGGCTGACGGCGTTGCCTTCTGAGCTTAAGAAGCCCTACGCCGTCAACCTCAGCAAGTTCGTTGAGAGTGAGATTTCCGGCACCGGCGGTGGTGGTGTTCCGATATATCCGCCGAGTCACTTGATCTTCAATGCTCTGAACTCCACCCCTTTTGATCGGGTCAAGGCTGTCATTTTGGGCCAGGACCCGTATCATGGGCCGGGTCAGGCTATGGGTCTGTCCTTCTCTGTTCCACAAGGAGTGAAGGTCCCATCGAGCCTGGTTAATATATTCAAGGAGCTTCACAAAGATGTTGGCTGTTCAATTCCATCTCATGGAAATCTAGAAAAATGGGCTGTTCAGGGTGTTCTGTTGCTCAATGCTGTTCTCACCGTTAGGGATCATCAGGCTAACTCTCATGCAAAGAAAGGATGGGAACAATTTACGGATGCTGTTATCCAAACGATTTCAAAAAAGAAGGAAGGAGTTGTTTTCCTCCTGTGGGGAAACTCCGCACAGCAGAAATCCAGGTTAGTTGATGTGTCGAAGCATCACATTCTTAGAGCGGCACATCCTTCCGGTTTATCTGCATACAGGGGCTTCTTTGGCTGCAGGCATTTTTCTCGCACGAACCAGCTTCTCAAGGAGATGGGTATTCCCCCGATCGATTGGCAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0010154 GO:0010214 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

366

Amino Acids

39.87

Weight (kDa)

9.86

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDG	PF03167	200 - 355	2.1e-15	Uracil DNA glycosylase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 521
AccB7I	CCANNNNNTGG	1 cut(s)	755
AccBSI	CCGCTC	1 cut(s)	986
AciI	CCGC	7 cut(s)	36, 207, 358, 528, 551, 933, 986
AclWI	GGATC	2 cut(s)	198, 828
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	323
AcvI	CACGTG	1 cut(s)	441
AcyI	GRCGYC	2 cut(s)	59, 252
AfiI	CCNNNNNNNGG	3 cut(s)	635, 755, 922
AflII	CTTAAG	1 cut(s)	467
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	5 cut(s)	220, 571, 715, 744, 891
AjnI	CCWGG	3 cut(s)	621, 699, 947
AluBI	AGCT	7 cut(s)	53, 155, 334, 424, 466, 721, 1057
AluI	AGCT	7 cut(s)	53, 155, 334, 424, 466, 721, 1057
Alw26I	GTCTC	1 cut(s)	385
AlwI	GGATC	2 cut(s)	198, 828
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	5 cut(s)	103, 339, 393, 619, 638
ApeKI	GCWGC	5 cut(s)	74, 137, 155, 334, 1029
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	4 cut(s)	619, 625, 638, 688
AsuC2I	CCSGG	1 cut(s)	642
AsuHPI	GGTGA	4 cut(s)	250, 289, 413, 802
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	625, 688
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	2 cut(s)	58, 521
BbrPI	CACGTG	1 cut(s)	441
BbvCI	CCTCAGC	1 cut(s)	491
BbvI	GCAGC	5 cut(s)	86, 142, 149, 321, 1016
BccI	CCATC	5 cut(s)	263, 700, 757, 846, 1063
BceAI	ACGGC	3 cut(s)	101, 465, 467
BcgI	CGANNNNNNTGC	2 cut(s)	1025, 1059
BciT130I	CCWGG	3 cut(s)	623, 701, 949
BclI	TGATCA	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	642
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	764
BfmI	CTRYAG	1 cut(s)	1030
BfoI	RGCGCY	1 cut(s)	62
BfrI	CTTAAG	1 cut(s)	467
BisI	GCNGC	6 cut(s)	75, 138, 156, 335, 987, 1030
BlsI	GCNGC	6 cut(s)	76, 139, 157, 336, 988, 1031
Bme1390I	CCNGG	4 cut(s)	623, 642, 701, 949
Bme18I	GGWCC	2 cut(s)	625, 688
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	4 cut(s)	619, 625, 638, 688
BmiI	GGNNCC	5 cut(s)	60, 148, 523, 627, 690
BmrFI	CCNGG	4 cut(s)	623, 642, 701, 949
BmsI	GCATC	2 cut(s)	859, 979
Bpu10I	CCTNAGC	1 cut(s)	491
BpuEI	CTTGAG	1 cut(s)	1046
BpuMI	CCSGG	1 cut(s)	642
Bsa29I	ATCGAT	1 cut(s)	1086
BsaAI	YACGTR	1 cut(s)	441
BsaHI	GRCGYC	2 cut(s)	59, 252
BsaJI	CCNNGG	2 cut(s)	129, 390
BsaWI	WCCGGW	2 cut(s)	17, 998
BsaXI	ACNNNNNCTCC	4 cut(s)	425, 455, 672, 702
Bsc4I	CCNNNNNNNGG	3 cut(s)	635, 755, 922
Bse118I	RCCGGY	1 cut(s)	524
Bse1I	ACTGG	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	147
BseBI	CCWGG	3 cut(s)	623, 701, 949
BseCI	ATCGAT	1 cut(s)	1086
BseDI	CCNNGG	2 cut(s)	129, 390
BseGI	GGATG	3 cut(s)	857, 874, 991
BseLI	CCNNNNNNNGG	3 cut(s)	635, 755, 922
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	2 cut(s)	453, 505
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	1 cut(s)	434
BseXI	GCAGC	5 cut(s)	86, 142, 149, 321, 1016
Bsh1285I	CGRYCG	1 cut(s)	1086
BshFI	GGCC	5 cut(s)	105, 341, 395, 621, 640
BshNI	GGYRCC	2 cut(s)	58, 521
BshVI	ATCGAT	1 cut(s)	1086
BsiEI	CGRYCG	1 cut(s)	1086
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	6 cut(s)	18, 372, 519, 525, 641, 999
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	3 cut(s)	635, 755, 922
BsmAI	GTCTC	1 cut(s)	385
BsmFI	GGGAC	1 cut(s)	674
BsnI	GGCC	5 cut(s)	105, 341, 395, 621, 640
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
BspACI	CCGC	7 cut(s)	36, 207, 358, 528, 551, 933, 986
BspANI	GGCC	5 cut(s)	105, 341, 395, 621, 640
BspCNI	CTCAG	2 cut(s)	454, 504
BspDI	ATCGAT	1 cut(s)	1086
BspLI	GGNNCC	5 cut(s)	60, 148, 523, 627, 690
BspMAI	CTGCAG	1 cut(s)	1034
BspPI	GGATC	2 cut(s)	198, 828
BspT107I	GGYRCC	2 cut(s)	58, 521
BspTI	CTTAAG	1 cut(s)	467
BsrBI	CCGCTC	1 cut(s)	986
BsrDI	GCAATG	1 cut(s)	147
BsrFI	RCCGGY	1 cut(s)	524
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	2 cut(s)	129, 390
BssMI	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
BssNI	GRCGYC	2 cut(s)	59, 252
BssT1I	CCWWGG	2 cut(s)	129, 390
Bst2UI	CCWGG	3 cut(s)	623, 701, 949
Bst4CI	ACNGT	1 cut(s)	814
BstACI	GRCGYC	2 cut(s)	59, 252
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	366
BstBAI	YACGTR	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	339, 1034
BstDEI	CTNAG	3 cut(s)	462, 491, 980
BstF5I	GGATG	3 cut(s)	857, 874, 991
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	6 cut(s)	85, 206, 567, 598, 823, 1086
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
BstMCI	CGRYCG	1 cut(s)	1086
BstMWI	GCNNNNNNNGC	4 cut(s)	366, 463, 472, 1026
BstNI	CCWGG	3 cut(s)	623, 701, 949
BstSCI	CCNGG	4 cut(s)	621, 640, 699, 947
BstSFI	CTRYAG	1 cut(s)	1030
BstV1I	GCAGC	5 cut(s)	86, 142, 149, 321, 1016
Bsu15I	ATCGAT	1 cut(s)	1086
BsuRI	GGCC	5 cut(s)	105, 341, 395, 621, 640
BsuTUI	ATCGAT	1 cut(s)	1086
BtsCI	GGATG	3 cut(s)	857, 874, 991
Cac8I	GCNNGC	2 cut(s)	339, 1034
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	4 cut(s)	619, 625, 638, 688
ClaI	ATCGAT	1 cut(s)	1086
CseI	GACGC	1 cut(s)	260
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	3 cut(s)	635, 755, 839
DdeI	CTNAG	3 cut(s)	462, 491, 980
DinI	GGCGCC	1 cut(s)	60
DpnI	GATC	6 cut(s)	84, 205, 566, 597, 822, 1085
DpnII	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
EaeI	YGGCCR	1 cut(s)	339
EciI	GGCGGA	2 cut(s)	196, 540
Eco130I	CCWWGG	2 cut(s)	129, 390
Eco32I	GATATC	1 cut(s)	184
Eco47I	GGWCC	2 cut(s)	625, 688
Eco72I	CACGTG	1 cut(s)	441
Eco88I	CYCGRG	1 cut(s)	302
EcoO109I	RGGNCCY	2 cut(s)	625, 688
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	621, 699, 947
EcoRV	GATATC	1 cut(s)	184
EcoT14I	CCWWGG	2 cut(s)	129, 390
EgeI	GGCGCC	1 cut(s)	60
EheI	GGCGCC	1 cut(s)	60
ErhI	CCWWGG	2 cut(s)	129, 390
FaeI	CATG	3 cut(s)	638, 758, 842
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	3 cut(s)	634, 754, 838
FauI	CCCGC	1 cut(s)	43
FbaI	TGATCA	1 cut(s)	82
Fnu4HI	GCNGC	6 cut(s)	75, 138, 156, 335, 987, 1030
FokI	GGATG	3 cut(s)	864, 881, 978
Fsp4HI	GCNGC	6 cut(s)	75, 138, 156, 335, 987, 1030
FspBI	CTAG	1 cut(s)	764
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	6 cut(s)	75, 138, 156, 335, 987, 1030
HaeII	RGCGCY	1 cut(s)	62
HaeIII	GGCC	5 cut(s)	105, 341, 395, 621, 640
HapII	CCGG	6 cut(s)	18, 372, 519, 525, 641, 999
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	2 cut(s)	59, 252
Hin1II	CATG	3 cut(s)	638, 758, 842
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	4 cut(s)	227, 378, 386, 556
HpaII	CCGG	6 cut(s)	18, 372, 519, 525, 641, 999
HphI	GGTGA	4 cut(s)	250, 289, 413, 802
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	6 cut(s)	45, 247, 385, 463, 543, 579
Hpy188III	TCNNGA	3 cut(s)	150, 328, 764
Hpy8I	GTNNAC	1 cut(s)	487
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	9 cut(s)	121, 276, 398, 468, 673, 679, 892, 896, 1005
HpyCH4III	ACNGT	1 cut(s)	814
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	3 cut(s)	842, 1010, 1032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	366, 463, 472, 1026
HpyF3I	CTNAG	3 cut(s)	462, 491, 980
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	2 cut(s)	59, 252
Hsp92II	CATG	3 cut(s)	638, 758, 842
HspAI	GCGC	1 cut(s)	59
KasI	GGCGCC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
LmnI	GCTCC	4 cut(s)	134, 374, 421, 718
Lsp1109I	GCAGC	5 cut(s)	86, 142, 149, 321, 1016
LweI	GCATC	2 cut(s)	859, 979
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	2 cut(s)	312, 557
MalI	GATC	6 cut(s)	84, 205, 566, 597, 822, 1085
MbiI	CCGCTC	1 cut(s)	986
MboI	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
MboII	GAAGA	8 cut(s)	178, 222, 261, 264, 267, 270, 273, 559
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	6 cut(s)	28, 63, 323, 413, 744, 860
MluNI	TGGCCA	1 cut(s)	341
Mly113I	GGCGCC	1 cut(s)	59
MlyI	GAGTC	2 cut(s)	387, 565
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	7 cut(s)	95, 305, 392, 412, 427, 500, 926
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	2 cut(s)	468, 705
MslI	CAYNNNNRTG	1 cut(s)	729
Msp20I	TGGCCA	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	6 cut(s)	18, 372, 519, 525, 641, 999
MspR9I	CCNGG	4 cut(s)	623, 642, 701, 949
MvaI	CCWGG	3 cut(s)	623, 701, 949
MwoI	GCNNNNNNNGC	4 cut(s)	366, 463, 472, 1026
NarI	GGCGCC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	642
NdeII	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
NlaIII	CATG	3 cut(s)	638, 758, 842
NlaIV	GGNNCC	5 cut(s)	60, 148, 523, 627, 690
NmeAIII	GCCGAG	1 cut(s)	579
NmuCI	GTSAC	2 cut(s)	312, 557
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	227, 386
PflMI	CCANNNNNTGG	1 cut(s)	755
PkrI	GCNGC	6 cut(s)	76, 139, 157, 336, 988, 1031
Ple19I	CGATCG	1 cut(s)	1086
PleI	GAGTC	2 cut(s)	386, 564
PluTI	GGCGCC	1 cut(s)	62
PmaCI	CACGTG	1 cut(s)	441
PmlI	CACGTG	1 cut(s)	441
PpsI	GAGTC	2 cut(s)	386, 564
Ppu21I	YACGTR	1 cut(s)	441
PpuMI	RGGWCCY	2 cut(s)	625, 688
Psp5II	RGGWCCY	2 cut(s)	625, 688
Psp6I	CCWGG	3 cut(s)	621, 699, 947
PspCI	CACGTG	1 cut(s)	441
PspGI	CCWGG	3 cut(s)	621, 699, 947
PspN4I	GGNNCC	5 cut(s)	60, 148, 523, 627, 690
PspPI	GGNCC	4 cut(s)	619, 625, 638, 688
PspPPI	RGGWCCY	2 cut(s)	625, 688
PstI	CTGCAG	1 cut(s)	1034
PstNI	CAGNNNCTG	1 cut(s)	334
PvuI	CGATCG	1 cut(s)	1086
RseI	CAYNNNNRTG	1 cut(s)	729
SaqAI	TTAA	2 cut(s)	468, 705
SatI	GCNGC	6 cut(s)	75, 138, 156, 335, 987, 1030
Sau3AI	GATC	6 cut(s)	82, 203, 564, 595, 820, 1083
Sau96I	GGNCC	4 cut(s)	619, 625, 638, 688
SchI	GAGTC	2 cut(s)	387, 565
ScrFI	CCNGG	4 cut(s)	623, 642, 701, 949
SfaNI	GCATC	2 cut(s)	859, 979
SfcI	CTRYAG	1 cut(s)	1030
SfoI	GGCGCC	1 cut(s)	60
SgrAI	CRCCGGYG	1 cut(s)	524
SinI	GGWCC	2 cut(s)	625, 688
SmiMI	CAYNNNNRTG	1 cut(s)	729
SmlI	CTYRAG	2 cut(s)	467, 1061
SmoI	CTYRAG	2 cut(s)	467, 1061
Sse9I	AATT	6 cut(s)	28, 63, 323, 413, 744, 860
SsiI	CCGC	7 cut(s)	36, 207, 358, 528, 551, 933, 986
SspDI	GGCGCC	1 cut(s)	58
SspMI	CTAG	1 cut(s)	764
StyD4I	CCNGG	4 cut(s)	621, 640, 699, 947
StyI	CCWWGG	2 cut(s)	129, 390
TaaI	ACNGT	1 cut(s)	814
TaiI	ACGT	1 cut(s)	443
TaqI	TCGA	3 cut(s)	695, 965, 1086
TasI	AATT	6 cut(s)	28, 63, 323, 413, 744, 860
TauI	GCSGC	1 cut(s)	989
TfiI	GAWTC	2 cut(s)	227, 386
Tru1I	TTAA	2 cut(s)	468, 705
Tru9I	TTAA	2 cut(s)	468, 705
TseFI	GTSAC	2 cut(s)	312, 557
TseI	GCWGC	5 cut(s)	74, 137, 155, 334, 1029
Tsp45I	GTSAC	2 cut(s)	312, 557
TspGWI	ACGGA	2 cut(s)	276, 881
Van91I	CCANNNNNTGG	1 cut(s)	755
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	2 cut(s)	625, 688
XapI	RAATTY	1 cut(s)	323
XbaI	TCTAGA	1 cut(s)	763
XspI	CTAG	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.