Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008372

Physical Location & Seq

Genomic Coordinates Forward (+)

11231414 .. 11231998

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G21030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGAATAATTTGAATGTTTTTACAAATGAAGACAATGAAATGAATGTGATGCCCCCACCGCGAGTGTGTCCAAGGTGTTATTCCGATCAAACCAGATTCAGCTACTTCAACAACAACAAGAAGTCTCAACCGCGCTACAAATGCAAGAATTGTTGTAGATGTTGGACTCATGGTGGAGTTTTAAGGAACATACCAGTCACTGGAATATGTGATAAATCCAATCTTCCGAAGATAGATCAATCTTCGGTTTCTCAAATGATCTTGGCTGAGATCCAACAAGGCAATCATCAACCTTTCAAAAAATTTCAAGAAAACATTTCAGTTAGTGTTTCTTCTTCTTCAGATGTTTCTATTGTTGGGAACCATTTCGATGATTTGAGTGAACTTCATGGTATAACAAATTCTACTCCAATTCGAAGTTTTACAATGGATCGCTTAGATTTTGGTGAAGAATCGTTTCAACAAGATTTATACGATGTTGGTTCCAATGATTTGATTGGTAACCCTTTGATAAACCAATCAATTGGTGGATATGTTGATAATCACAAAGATGAACACAAGTTGCAATTTGAATATGAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

194

Amino Acids

22.11

Weight (kDa)

5.46

Isoelectric Point (pI)

45.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	21 - 73	3.2e-22	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008372)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29160 AT2G34140 AT4G21030 AT4G21040 AT4G21050 AT4G21080
fragaria_vesca	FvH4_3g07790
malus_domestica	MD05G1301100.v1.1 MD10G1280000.v1.1
prunus_persica	Prupe.4G061400_v2.0.a1
pyrus_communis	pycom05g27890 pycom10g23380
rosa_chinensis	RchiOBHm_Chr5g0010791
rosa_laevigata	RLG00000031780
rosa_multiflora	Rmu_sc0000109.1_g000019
rosa_roxburghii	Rroxscaffold_1G00065590
rosa_rugosa	Rorug04G0452500
rosa_samantha	Rh5AG084700 Rh5BG079500 Rh5CG092200 Rh5DG079600
rosa_wichuraiana	Rw0G000550 Rw0G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	200
AccII	CGCG	2 cut(s)	61, 133
AciI	CCGC	2 cut(s)	59, 131
AclWI	GGATC	2 cut(s)	265, 438
AcsI	RAATTY	2 cut(s)	302, 400
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	6 cut(s)	13, 109, 298, 308, 461, 572
AjuI	GAANNNNNNNTTGG	2 cut(s)	64, 96
AluBI	AGCT	1 cut(s)	102
AluI	AGCT	1 cut(s)	102
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	2 cut(s)	265, 438
AlwNI	CAGNNNCTG	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	302, 400
Asp700I	GAANNNNTTC	2 cut(s)	365, 456
AspLEI	GCGC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	458
AsuII	TTCGAA	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	129
BmiI	GGNNCC	2 cut(s)	362, 484
BmsI	GCATC	1 cut(s)	39
BpiI	GAAGAC	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	415
BsaJI	CCNNGG	1 cut(s)	71
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	194, 205
BseDI	CCNNGG	1 cut(s)	71
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	194, 205
Bsh1236I	CGCG	2 cut(s)	61, 133
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	129
Bsp119I	TTCGAA	1 cut(s)	415
Bsp143I	GATC	5 cut(s)	85, 235, 258, 270, 430
BspACI	CCGC	2 cut(s)	59, 131
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	2 cut(s)	61, 133
BspLI	GGNNCC	2 cut(s)	362, 484
BspPI	GGATC	2 cut(s)	265, 438
BspT104I	TTCGAA	1 cut(s)	415
BsrI	ACTGG	2 cut(s)	194, 205
BssECI	CCNNGG	1 cut(s)	71
BssMI	GATC	5 cut(s)	85, 235, 258, 270, 430
BssT1I	CCWWGG	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	267, 436
BstEII	GGTNACC	1 cut(s)	500
BstFNI	CGCG	2 cut(s)	61, 133
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	5 cut(s)	88, 238, 261, 273, 433
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	5 cut(s)	85, 235, 258, 270, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 141
BstPI	GGTNACC	1 cut(s)	500
BstUI	CGCG	2 cut(s)	61, 133
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	270
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	200
CfoI	GCGC	1 cut(s)	135
CviAII	CATG	2 cut(s)	170, 389
CviJI	RGCY	2 cut(s)	102, 266
CviKI_1	RGCY	2 cut(s)	102, 266
DdeI	CTNAG	2 cut(s)	267, 436
DpnI	GATC	5 cut(s)	87, 237, 260, 272, 432
DpnII	GATC	5 cut(s)	85, 235, 258, 270, 430
Eco130I	CCWWGG	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	324
Eco91I	GGTNACC	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	500
EcoT14I	CCWWGG	1 cut(s)	71
ErhI	CCWWGG	1 cut(s)	71
FaeI	CATG	2 cut(s)	173, 392
FaiI	YATR	9 cut(s)	171, 191, 208, 390, 395, 472, 534, 576, 583
FatI	CATG	2 cut(s)	169, 388
GlaI	GCGC	1 cut(s)	134
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	173, 392
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	4 cut(s)	96, 166, 452, 578
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	3 cut(s)	85, 228, 343
Hpy188III	TCNNGA	1 cut(s)	308
Hpy8I	GTNNAC	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	144, 565
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 141
HpyF3I	CTNAG	2 cut(s)	267, 436
Hsp92II	CATG	2 cut(s)	173, 392
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	85, 235, 258, 270, 430
LpnPI	CCDG	3 cut(s)	106, 186, 207
LweI	GCATC	1 cut(s)	39
MaeIII	GTNAC	2 cut(s)	196, 500
MalI	GATC	5 cut(s)	87, 237, 260, 272, 432
MboI	GATC	5 cut(s)	85, 235, 258, 270, 430
MboII	GAAGA	8 cut(s)	41, 215, 234, 241, 324, 327, 330, 461
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	7 cut(s)	7, 148, 302, 400, 411, 522, 566
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	2 cut(s)	143, 298
MroXI	GAANNNNTTC	2 cut(s)	365, 456
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	2 cut(s)	369, 549
MunI	CAATTG	1 cut(s)	522
MvnI	CGCG	2 cut(s)	61, 133
MwoI	GCNNNNNNNGC	2 cut(s)	58, 141
NdeII	GATC	5 cut(s)	85, 235, 258, 270, 430
NlaIII	CATG	2 cut(s)	173, 392
NlaIV	GGNNCC	2 cut(s)	362, 484
NmuCI	GTSAC	1 cut(s)	196
NspV	TTCGAA	1 cut(s)	415
PdmI	GAANNNNTTC	2 cut(s)	365, 456
PfeI	GAWTC	3 cut(s)	96, 452, 578
PflMI	CCANNNNNTGG	1 cut(s)	200
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PspEI	GGTNACC	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	362, 484
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	1 cut(s)	270
RseI	CAYNNNNRTG	2 cut(s)	369, 549
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	5 cut(s)	85, 235, 258, 270, 430
SchI	GAGTC	1 cut(s)	160
SetI	ASST	3 cut(s)	77, 104, 295
SfaNI	GCATC	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	369, 549
Sse9I	AATT	7 cut(s)	7, 148, 302, 400, 411, 522, 566
SsiI	CCGC	2 cut(s)	59, 131
StyI	CCWWGG	1 cut(s)	71
TaqI	TCGA	2 cut(s)	369, 415
TasI	AATT	7 cut(s)	7, 148, 302, 400, 411, 522, 566
TfiI	GAWTC	3 cut(s)	96, 452, 578
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	6 cut(s)	17, 42, 51, 56, 377, 567
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	200
XapI	RAATTY	2 cut(s)	302, 400
XcmI	CCANNNNNNNNNTGG	1 cut(s)	524
XmnI	GAANNNNTTC	2 cut(s)	365, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.